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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0348400 |
| Transcript ID | LotjaGi6g1v0348400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G31070.1 PPR superfamily protein; Swiss-Prot: sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070, mitochondrial; TrEMBL-Plants: tr|I1ME15|I1ME15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0348400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66123677..66126189) extracted from Lotus japonicus Gifu genome v1.2.
GTCGCAATGGTTAAAAATGTCTAATTGAACCGTTAATGTGCTTTTGAGACGTCTTTTAAATTCTACGTTTCAATATAGAA TATCTAGTTTACTAAAAAAAAACCTATTCATGTAAGAAAAAGAGTTTTCAACCCATCATTATCAACCTTCGATGATTTGA AAGTTGAAACAAACTTCTGTCAAACATTTTACTACGTATAATTTTCACATTCACATGTGATCATCATGTTCATATAGTCC TGAGAACACAAGCAGCTAAGCTTTGGTGCAGAGTGCAGACACAATGATTCTGAGTCTGAGTTTGAATCCTCCATGGCTTT CCTTACCCGTCGCTTTTTAGCTACTGTATCCCCCACACCTTCACCTTCCCAACAGATCAAAAGCTTGATATCACAGGGTC TTTATCACCAAACACTTGAACTTTTCACACAGCTCCATTTTTCTGCCCCCCATTCCATCTCCTCTGTTCTTCCCTCAGTC ATCAAAGCATGCTCCTCTCTCCATTCTCATACTTTAGGCACCCTCCTTCATGGCTTGGCTCTCACCACCGGTTCCCACTC CGACCCAGTTGTCTCCAATTCCCTCATCTCCTTGTACGCCAAGTTTTCGGATATTCAATCAGCACGGCAAGTGTTCGACA CAATGCCCCACAGAGACCCCATCTCCTGGAACTCCATGATCAATGCTTATTTGCAAAATGGGTGCTTGGAAGAAGCTCTG GAAATGTTGAAAGGTGTGTATTTGCTTGGTCTTGTTCCCAAGCCAGAGCTGTTAGCTAGCATGGTGTCCTTGTGTGGGAG GAAAATGGGCTCAAGGATAGGAAGGCAGATTCATGCTCTTGTTGTTGTGGATGGGAGGGTAGAGCATTCAGTGGTTCTGT CAACAGCTCTTGTGGATTTCTATTTCAGATGTGATGACGCTCTGATGGCTTCACGTGTGTTTGATGGGATGGAGGTGAAA AATGAGGTTTCATGGACTGCTATGATATCTGGATGCATTGCTAATCTAGATTACGACGCAGCTTTTGCGCGCTTTCGAGC AATGCAGGTTGAGGGAGTTGACCCAAATAGAGTGACATTAATTGCTCTGTTACCAGCTTGTGCAAAGCCAGGATTTGTTA AGCATGGAAAGGAGATTCATGGCTATGCATTCCGTCATGGGATTGAGTCGAGTCATATTTTTTCATCAGCTCTTATAAAT ATGTATTGTCAATCTGGAGAATCACTGCACCTTGCTGAGCAAATTTTTGAAAGGTCTAGTTTCAGAGATGTGGTGCTATG GAGTTCAATCATTGGGAGCTATTCTCAAAGAGGAGATAGTTACAAAGCCTTGACACTATTTAATAAGATGCTGACTGAGG AAACTGAACCTAACTATGTGACTTTGTTGGCAGTGATCTCTGCCTGCACAAACTTATCTTCATTAAAGCATGGTTGTGGA CTTCATGGCTTTATACTGAAATTTGGCCTCAGTTTTAGCATCTCTCTAAGTAATGCACTTATGAATATGTACGCCAAATG TGGTTGTCTTGAGGGTTCTCTCCAGATATTCCTAGAAATGCAGAATAGAGATTCTATTTCATGGAGTACTATGATCAGTG CCTATGGCCTTCATGGACATGGTGAACAAGCTCTTAAACTGTTTTCTGAAATGAAAGAGAGGGGAGTGAAACCTGATGCA CTCACCTTCCTTGCAGTCTTATCTGCTTGTAATCATGCTGGCCTTGTGACTGAGGGACAACAGGTATTCAAGCAAGTAAA TGCAGATTATGAAATTCCATTAACTATAGAGCATTATGCATGCCTAGTTGATCTTCTTGGAAGGTCAGGCAAGGTTGAAG ATGCTTTGGAAATAATGAGAACGATGCCCATGAAACCGAGTACAAGAATATGGAGCTCGCTTGTTTCGGCTTGTAAGCTT CATGGAAGACTAGACATTGCAGAAATGCTAGGCCCTCAGCTTATAAGATCAGAGCCAGATAATGCTGCTAATTACACATT GTTGAATATGATTTATGCTGAGCATGGTCATTGGCTTCATAAAGAACAAGTAATGGAAGCAATGAAACTTCAAAGGTTAA AGAAGTGCTATGGGTTCAGCCGCATTGAGACAGGAAACCAGTGTTTCTAGCATAATTGGAAGTATATTTGTTATGGTAAC CCGAATTGAAATCGTTATAAAACTATCAAGCTGAGCCTATATGGAACTTTGAGCAAACATGCTATGTTTTGTATCTCTTT TATACCGAAGCATCTAGTATTGCTCATTTCTTAAGAGGTTTATCTCCCCCTGAATGTAAGTGTTGTTTGGCCGTACTCAT AATTTAACTCAGAATCATTTGAAAAAAAATCATCAAATATAATTCAGATGAAAGGGTTGCCAAACAGTGGATTACTGGCT CAAGCATAAAGTAACAATAAAACTACAAATCTATACTTTTAAAATTGTCTATTATTCAATACCTACAAAATAAAAACATA CAAGAAACGAAGGAGCATTCAATTAAAGGTTAG
CDS sequence (LotjaGi6g1v0348400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCCTTACCCGTCGCTTTTTAGCTACTGTATCCCCCACACCTTCACCTTCCCAACAGATCAAAAGCTTGATATC ACAGGGTCTTTATCACCAAACACTTGAACTTTTCACACAGCTCCATTTTTCTGCCCCCCATTCCATCTCCTCTGTTCTTC CCTCAGTCATCAAAGCATGCTCCTCTCTCCATTCTCATACTTTAGGCACCCTCCTTCATGGCTTGGCTCTCACCACCGGT TCCCACTCCGACCCAGTTGTCTCCAATTCCCTCATCTCCTTGTACGCCAAGTTTTCGGATATTCAATCAGCACGGCAAGT GTTCGACACAATGCCCCACAGAGACCCCATCTCCTGGAACTCCATGATCAATGCTTATTTGCAAAATGGGTGCTTGGAAG AAGCTCTGGAAATGTTGAAAGGTGTGTATTTGCTTGGTCTTGTTCCCAAGCCAGAGCTGTTAGCTAGCATGGTGTCCTTG TGTGGGAGGAAAATGGGCTCAAGGATAGGAAGGCAGATTCATGCTCTTGTTGTTGTGGATGGGAGGGTAGAGCATTCAGT GGTTCTGTCAACAGCTCTTGTGGATTTCTATTTCAGATGTGATGACGCTCTGATGGCTTCACGTGTGTTTGATGGGATGG AGGTGAAAAATGAGGTTTCATGGACTGCTATGATATCTGGATGCATTGCTAATCTAGATTACGACGCAGCTTTTGCGCGC TTTCGAGCAATGCAGGTTGAGGGAGTTGACCCAAATAGAGTGACATTAATTGCTCTGTTACCAGCTTGTGCAAAGCCAGG ATTTGTTAAGCATGGAAAGGAGATTCATGGCTATGCATTCCGTCATGGGATTGAGTCGAGTCATATTTTTTCATCAGCTC TTATAAATATGTATTGTCAATCTGGAGAATCACTGCACCTTGCTGAGCAAATTTTTGAAAGGTCTAGTTTCAGAGATGTG GTGCTATGGAGTTCAATCATTGGGAGCTATTCTCAAAGAGGAGATAGTTACAAAGCCTTGACACTATTTAATAAGATGCT GACTGAGGAAACTGAACCTAACTATGTGACTTTGTTGGCAGTGATCTCTGCCTGCACAAACTTATCTTCATTAAAGCATG GTTGTGGACTTCATGGCTTTATACTGAAATTTGGCCTCAGTTTTAGCATCTCTCTAAGTAATGCACTTATGAATATGTAC GCCAAATGTGGTTGTCTTGAGGGTTCTCTCCAGATATTCCTAGAAATGCAGAATAGAGATTCTATTTCATGGAGTACTAT GATCAGTGCCTATGGCCTTCATGGACATGGTGAACAAGCTCTTAAACTGTTTTCTGAAATGAAAGAGAGGGGAGTGAAAC CTGATGCACTCACCTTCCTTGCAGTCTTATCTGCTTGTAATCATGCTGGCCTTGTGACTGAGGGACAACAGGTATTCAAG CAAGTAAATGCAGATTATGAAATTCCATTAACTATAGAGCATTATGCATGCCTAGTTGATCTTCTTGGAAGGTCAGGCAA GGTTGAAGATGCTTTGGAAATAATGAGAACGATGCCCATGAAACCGAGTACAAGAATATGGAGCTCGCTTGTTTCGGCTT GTAAGCTTCATGGAAGACTAGACATTGCAGAAATGCTAGGCCCTCAGCTTATAAGATCAGAGCCAGATAATGCTGCTAAT TACACATTGTTGAATATGATTTATGCTGAGCATGGTCATTGGCTTCATAAAGAACAAGTAATGGAAGCAATGAAACTTCA AAGGTTAAAGAAGTGCTATGGGTTCAGCCGCATTGAGACAGGAAACCAGTGTTTCTAG
Protein sequence (LotjaGi6g1v0348400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLTRRFLATVSPTPSPSQQIKSLISQGLYHQTLELFTQLHFSAPHSISSVLPSVIKACSSLHSHTLGTLLHGLALTTG SHSDPVVSNSLISLYAKFSDIQSARQVFDTMPHRDPISWNSMINAYLQNGCLEEALEMLKGVYLLGLVPKPELLASMVSL CGRKMGSRIGRQIHALVVVDGRVEHSVVLSTALVDFYFRCDDALMASRVFDGMEVKNEVSWTAMISGCIANLDYDAAFAR FRAMQVEGVDPNRVTLIALLPACAKPGFVKHGKEIHGYAFRHGIESSHIFSSALINMYCQSGESLHLAEQIFERSSFRDV VLWSSIIGSYSQRGDSYKALTLFNKMLTEETEPNYVTLLAVISACTNLSSLKHGCGLHGFILKFGLSFSISLSNALMNMY AKCGCLEGSLQIFLEMQNRDSISWSTMISAYGLHGHGEQALKLFSEMKERGVKPDALTFLAVLSACNHAGLVTEGQQVFK QVNADYEIPLTIEHYACLVDLLGRSGKVEDALEIMRTMPMKPSTRIWSSLVSACKLHGRLDIAEMLGPQLIRSEPDNAAN YTLLNMIYAEHGHWLHKEQVMEAMKLQRLKKCYGFSRIETGNQCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 167 | 148 | 3.8E-15 | ||
| PANTHER | 29 | 140 | 112 | 1.1E-115 | – | |
| ProSiteProfiles | 84 | 114 | 31 | 8.079 | ||
| Pfam | 88 | 112 | 25 | 0.044 | ||
| ProSiteProfiles | 115 | 149 | 35 | 11.29 | ||
| Pfam | 117 | 140 | 24 | 8.6E-7 | ||
| TIGRFAM | 117 | 149 | 33 | 1.0E-5 | ||
| PANTHER | 151 | 276 | 126 | 1.1E-115 | – | |
| Gene3D | 168 | 277 | 110 | 1.4E-16 | ||
| ProSiteProfiles | 186 | 216 | 31 | 5.371 | ||
| Pfam | 216 | 265 | 50 | 5.1E-8 | ||
| ProSiteProfiles | 217 | 251 | 35 | 9.756 | ||
| TIGRFAM | 219 | 252 | 34 | 3.2E-4 | ||
| ProSiteProfiles | 252 | 286 | 35 | 6.588 | ||
| PANTHER | 271 | 374 | 104 | 1.1E-115 | – | |
| Gene3D | 278 | 391 | 114 | 1.0E-13 | ||
| ProSiteProfiles | 287 | 318 | 32 | 5.864 | ||
| ProSiteProfiles | 319 | 353 | 35 | 10.139 | ||
| TIGRFAM | 321 | 354 | 34 | 1.5E-4 | ||
| Pfam | 321 | 348 | 28 | 2.1E-4 | ||
| ProSiteProfiles | 354 | 388 | 35 | 5.075 | ||
| PANTHER | 372 | 580 | 209 | 1.1E-115 | – | |
| ProSiteProfiles | 389 | 419 | 31 | 8.013 | ||
| Pfam | 394 | 419 | 26 | 6.3E-4 | ||
| Gene3D | 394 | 600 | 207 | 1.0E-38 | ||
| TIGRFAM | 394 | 420 | 27 | 0.0028 | ||
| ProSiteProfiles | 420 | 454 | 35 | 13.362 | ||
| Pfam | 420 | 466 | 47 | 7.8E-13 | ||
| TIGRFAM | 422 | 456 | 35 | 1.1E-9 | ||
| ProSiteProfiles | 455 | 489 | 35 | 7.125 | ||
| ProSiteProfiles | 491 | 521 | 31 | 7.936 | ||
| Pfam | 495 | 519 | 25 | 0.08 | ||
| ProSiteProfiles | 523 | 553 | 31 | 5.799 | ||
| ProSiteProfiles | 557 | 591 | 35 | 5.886 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0348400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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