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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0350200 |
| Transcript ID | LotjaGi6g1v0350200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G64330.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3; TrEMBL-Plants: tr|I1MDZ4|I1MDZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66239495..66243562) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAGGGTCTTTTATTTTAACCTTTTTTTGTATGGCTAACCACGAGGTTTCATCCTATAAAATCCAAAATGGTGGGTT TCATTGGTAATCAATTGGCACTGACAACATCCTAACCCCAAATCCTGTTAGGGAAGTGTGTTTATCATAGTCAAAGGAAT GTTTTGGGGTGTAACAAATATCAATAACAACTAAAAGAATAAGAAAATGAGCTGAAAAGGAAGAGACATGTATGTATGGT CAGGCATCAAGAAACTGAATTTCTTGTCCTTTTTATACATTGACTATAGAGGTACCTACCAAAACATCCAAAGCTGGAAT GAACAGAAACTCAAATGATCATTCACTTGTGTATGCCCATTCCAGCACAGCCTGTAAACACTTCTTCAATTCATTGGCTA AGAAACCGACAATTTTAAGATAACTAATAATTCCAAGCTCCAACCATCCCATGTGGGTTCCTCCTCTTCCTCATTTTGCT CTTTTTCTCTGTGTTTTTTTCTTTTTTTTGGTTGTGACCGAGTTAAAGCTACTTCACTGAGAAACATCTAGATTCTTCAC CAGTGCATTCTGTGAATCTGGTTTCTCCAACATGTGGGAATCAGAAAGTGAATCAGCGGCAGCACAGAAATATGGGGGTG GAATTCTCACTTCAACCAAGCATGGTGTCAAGACAGAAGGATTTGTGCAAAGGGGACACTCTTGGTATGTTAAATGAAGA ATTAGTACACATTAAGATGTTACAGCCACTAATTAAGAAACTTTATGAATATCATATTGTTTTGTACTATTAACTTATCC ATTTCATGTCTTGTACTATTGTATTGTCTTGAGAACTCAATCCCTTTTCTTGCAGGTATGTTGCAACCGATGTTCCAAGT GACTTTCTTGTTCAAATTGGAGAAACTAGCTTCCACTTACACAAGGTAGGTAGCTATATTTTGTTCTTGTTTCTGAAAGT TTGAATTTTTGTGCAATGGTTTTATATTAAGAGATGAAGGACTACTCATTTCTTTTTACTGATAAATATTGGGTCTATTT CTCTCCCTTTGTTTTGTTGTGAAAGTATCCTTTGGTATCTCGAAGTGGAAAGCTGAACAGAATCATATATGAATCAAGCA TCCCAGATTTGAATAAGATAGTTATGGATGATATCCCTGGTGGACCTGAGGCTTTTGAAATTGCAGCAAAGTTCTGCTAT GGAGTTGCTGTTGATTTAACAGCAGGCAACATCTCCGGCCTTAGATGCGCTGCAGAGTATCTAGAAATGACAGAGGACCT GGAGGAAGGGAATCTCATATTCAAGACAGAAGCATTCCTTAGCTATGTTGTTTTGTCTTCATGGAGAGACTCCATTGTAG TGTTGAAAAGCTGTGAGAAGCTCTCACCATGGGCGGAGAACCTTCAAATTGTTCGCCGATGCAGCGAGTCCATAGCTTGG AAGGCTTGTGCTAATCCAAAAGGGATAAGGTGGTCCTATACCGGAAGATCCGTAAAACATCCCAGTCCAAAATGGAATGA TTTGAAAGACTCAAGCCCAAGTAGGAATCAGCAGGTTCCTCCTGATTGGTGGTTTGAAGATGCCTCTATTCTCAGGATTG ATCACTTTGTTAGAGTTATTACTGCCATTAAGGTAAAGGGCATGAGATTTGAATTGATTGGTGCTGCAATAATGCATTAC GCAACTAAATGGCTACCAGGATTGATTAGCGACACGACAATCCCTGGCGACGAAGCGAGCAACTTCAGTATCAGTAATAG TAGTAGTAGTAGTAGCACCAGCTGGAAAGGTGGACTTCATATGATTGTGTCTGGACCCGGAACTAGAGATGACACCGCTT CAAGTCTTCAAGCTAAAGATCAAAGGATGATTATTGAGAGCCTCATCAGCATTATTCCACCACAGAAGGACAGTGTCTCA TGCAGCTTCCTTCTTAGGCTCCTGAGAATGGCAATCATGTTAAAGGTTGCACCAGCACTAGTTACTGAATTAGAGAAAAG AGTGGGAATGCAATTTGAGCAGGCTACACTGACTGATCTTCTAATTCCTTCTTATGATAAAGGAGAGACTGTGTATGATG TGGATCTTATTCAGAGGCTATTGGAGCATTTTCTTGTACAAGAACTGACTGAAAGTTCTAGTCCAGGCAGAAAGTCCTTT TCTGAAAAAATTGTTGGATGTAACCTTAATGCCAAGGCAAGAGTGGCTAGGCTTGTTGACAGTTATCTCACTGAGGTGTC CAGGGATAGAAACCTTTCCCTCACAAAGTTTCAAGTACTGGCAGAAGCTTTGCCAGAGTCAGCTAGGACCTGTGATGATG GACTCTACAGAGCAATTGATTCCTATCTTAAGGTAATTATTTCCTGTTTCTATGGAAAAACGAAGCAAAAATGTTATTGA TCTTGTTTTTAATGTTTTTGAGTTATCTAAGGTTATACTTCATTATACTTTGGTAAAACAACATGATGAAATTTGAAATG AAAATTTGGGTTTCATGATAACTTTGCATGCTTATTTATTGTATTCAATATTCATCATAATAAAGGGAAAAGTTGATTGG TGAATCTATTTTCAGTGGCAATACATTTTAGTTATAGGGCTTTTTTATTCCCCGAATTTCCTGAATCCCACCTTTTTTTT CCATCTCCATTTCACTCTTTTTTCTTTTTCTTTCTATCTTTCTCTCATTCCTCAATCACATCACCCATCATATCTCTCAC AACTATTTTTTTATTTCTTTCTCACTCTGGGTGAAGGTTGAAATTATGTGCTGATGAAACATTAATGTATCTATTATATC ACACATATAAGATCACTAAATATAATATCGATCAATTCCCTAGCAAAATGATTTGTTTCATAGAGAAGGTTAGATTTATA TCCATTAGTTTGGCAAAGGGGGAATACAAAAGAGCTTTTGAGATACTACTAATACTACCATATTTGGTTTCACTGTAAAA TGCTCTACAATCACGTCTTTAGCTTCTGATAAATCTCCCTTGAATTTTGTGCAAATCGTGAAACCAAACATGTTATATAT GTGTGCTTCACTCATTCTAGAGCAATCAGTAGGAATGTCTAGTGGCTCAGCTTCACTTTCCACATTGATTTGGACTTCTG GATTTTTTTTTATTGTGAAACAAATTAACAGGCACATCCAACACTTTCTGAGCATGAAAGGAAGCGACTCTGCCGTGTAA TGGATTGCCAGAAACTCTCCATTGATGCCTGCATGCATGCCGCCCAAAACGAAAGGCTTCCATTAAGAGTGGTTATACAA GTTCTATTCGCTGAGCAGATTAAGATAAGCAATGCACTAGCCACAAGTTCTCTGAAAGATGTTGATTCTCTTACTCAGCC AATGGCTTCAAACAGGAAAACAATTCTTGAAGGGACACCACAATCATTTCAAGAAGGCTGGTCAGCTTCTAAAAAAGATA TCAATTCACTGAAGTTTGAGCTGGAGAGTATGAAAGCTAAGTACTTGGAGCTTCAGAGTGAAATGGAAAGTTTGCAGAAA CAATTTGATAAGATGCTAAAGCAGAAGCATACTTCAGCATGGAGCAGTGGGTGGAAGAAACTGAGCAAACTTACAAAGAT GACAAATGTGCAAAATCATGATTATTCACCTCAGGTTCCAGCTATAGCAGAACAGAACAGAAGGCCTACTAGAAGGTGGA GAAACTCCATATCCTGATTCCTGGAAGAAGAGAAATTCTCATTTTCTTTGAAACTTATTCTTCTATGTCCCCAGTTTTTT CTATCTAGTTTGGTCATATTTCTCTTTTCTTCTTTTGAGCAGCAGATGGTGCTTCTGTTCTCTCAGATAACAGTTTATGT ATTGTAGCAAACTAGCAATGGTACAAGATTCTAGTTGTAGCTAAATTGGAATTTGTCACCAAAGTCATATATTTAGAGAT GAATTCTACTGTCACTTGAAGCGCAACTAAAAATATGTTTGGTTTTACGGTGAAATACTCTCGAATTACTTCAGTTAGAA GCTATTAGTCTTTAGTTTCATATTAAATTTGTATTAGATTATGCATTGAGCACACAATTTGGAAATGG
CDS sequence (LotjaGi6g1v0350200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGAATCAGAAAGTGAATCAGCGGCAGCACAGAAATATGGGGGTGGAATTCTCACTTCAACCAAGCATGGTGTCAA GACAGAAGGATTTGTGCAAAGGGGACACTCTTGGTATGTTGCAACCGATGTTCCAAGTGACTTTCTTGTTCAAATTGGAG AAACTAGCTTCCACTTACACAAGTATCCTTTGGTATCTCGAAGTGGAAAGCTGAACAGAATCATATATGAATCAAGCATC CCAGATTTGAATAAGATAGTTATGGATGATATCCCTGGTGGACCTGAGGCTTTTGAAATTGCAGCAAAGTTCTGCTATGG AGTTGCTGTTGATTTAACAGCAGGCAACATCTCCGGCCTTAGATGCGCTGCAGAGTATCTAGAAATGACAGAGGACCTGG AGGAAGGGAATCTCATATTCAAGACAGAAGCATTCCTTAGCTATGTTGTTTTGTCTTCATGGAGAGACTCCATTGTAGTG TTGAAAAGCTGTGAGAAGCTCTCACCATGGGCGGAGAACCTTCAAATTGTTCGCCGATGCAGCGAGTCCATAGCTTGGAA GGCTTGTGCTAATCCAAAAGGGATAAGGTGGTCCTATACCGGAAGATCCGTAAAACATCCCAGTCCAAAATGGAATGATT TGAAAGACTCAAGCCCAAGTAGGAATCAGCAGGTTCCTCCTGATTGGTGGTTTGAAGATGCCTCTATTCTCAGGATTGAT CACTTTGTTAGAGTTATTACTGCCATTAAGGTAAAGGGCATGAGATTTGAATTGATTGGTGCTGCAATAATGCATTACGC AACTAAATGGCTACCAGGATTGATTAGCGACACGACAATCCCTGGCGACGAAGCGAGCAACTTCAGTATCAGTAATAGTA GTAGTAGTAGTAGCACCAGCTGGAAAGGTGGACTTCATATGATTGTGTCTGGACCCGGAACTAGAGATGACACCGCTTCA AGTCTTCAAGCTAAAGATCAAAGGATGATTATTGAGAGCCTCATCAGCATTATTCCACCACAGAAGGACAGTGTCTCATG CAGCTTCCTTCTTAGGCTCCTGAGAATGGCAATCATGTTAAAGGTTGCACCAGCACTAGTTACTGAATTAGAGAAAAGAG TGGGAATGCAATTTGAGCAGGCTACACTGACTGATCTTCTAATTCCTTCTTATGATAAAGGAGAGACTGTGTATGATGTG GATCTTATTCAGAGGCTATTGGAGCATTTTCTTGTACAAGAACTGACTGAAAGTTCTAGTCCAGGCAGAAAGTCCTTTTC TGAAAAAATTGTTGGATGTAACCTTAATGCCAAGGCAAGAGTGGCTAGGCTTGTTGACAGTTATCTCACTGAGGTGTCCA GGGATAGAAACCTTTCCCTCACAAAGTTTCAAGTACTGGCAGAAGCTTTGCCAGAGTCAGCTAGGACCTGTGATGATGGA CTCTACAGAGCAATTGATTCCTATCTTAAGGCACATCCAACACTTTCTGAGCATGAAAGGAAGCGACTCTGCCGTGTAAT GGATTGCCAGAAACTCTCCATTGATGCCTGCATGCATGCCGCCCAAAACGAAAGGCTTCCATTAAGAGTGGTTATACAAG TTCTATTCGCTGAGCAGATTAAGATAAGCAATGCACTAGCCACAAGTTCTCTGAAAGATGTTGATTCTCTTACTCAGCCA ATGGCTTCAAACAGGAAAACAATTCTTGAAGGGACACCACAATCATTTCAAGAAGGCTGGTCAGCTTCTAAAAAAGATAT CAATTCACTGAAGTTTGAGCTGGAGAGTATGAAAGCTAAGTACTTGGAGCTTCAGAGTGAAATGGAAAGTTTGCAGAAAC AATTTGATAAGATGCTAAAGCAGAAGCATACTTCAGCATGGAGCAGTGGGTGGAAGAAACTGAGCAAACTTACAAAGATG ACAAATGTGCAAAATCATGATTATTCACCTCAGGTTCCAGCTATAGCAGAACAGAACAGAAGGCCTACTAGAAGGTGGAG AAACTCCATATCCTGA
Protein sequence (LotjaGi6g1v0350200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWESESESAAAQKYGGGILTSTKHGVKTEGFVQRGHSWYVATDVPSDFLVQIGETSFHLHKYPLVSRSGKLNRIIYESSI PDLNKIVMDDIPGGPEAFEIAAKFCYGVAVDLTAGNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVV LKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWSYTGRSVKHPSPKWNDLKDSSPSRNQQVPPDWWFEDASILRID HFVRVITAIKVKGMRFELIGAAIMHYATKWLPGLISDTTIPGDEASNFSISNSSSSSSTSWKGGLHMIVSGPGTRDDTAS SLQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMAIMLKVAPALVTELEKRVGMQFEQATLTDLLIPSYDKGETVYDV DLIQRLLEHFLVQELTESSSPGRKSFSEKIVGCNLNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDG LYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVIQVLFAEQIKISNALATSSLKDVDSLTQP MASNRKTILEGTPQSFQEGWSASKKDINSLKFELESMKAKYLELQSEMESLQKQFDKMLKQKHTSAWSSGWKKLSKLTKM TNVQNHDYSPQVPAIAEQNRRPTRRWRNSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 671 | 667 | 0.0 | ||
| PANTHER | 5 | 671 | 667 | 0.0 | ||
| SUPERFAMILY | 34 | 131 | 98 | 8.63E-15 | ||
| CDD | 37 | 141 | 105 | 2.71375E-54 | – | |
| Gene3D | 39 | 184 | 146 | 7.7E-7 | – | |
| ProSiteProfiles | 46 | 114 | 69 | 9.992 | ||
| SMART | 46 | 144 | 99 | 1.3E-4 | ||
| Pfam | 46 | 131 | 86 | 2.7E-4 | ||
| ProSiteProfiles | 228 | 541 | 314 | 93.198 | ||
| Pfam | 228 | 517 | 290 | 3.3E-108 | ||
| Coils | 587 | 621 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0350200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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