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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0350200 |
| Transcript ID | LotjaGi6g1v0350200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G64330.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3; TrEMBL-Plants: tr|I1MDZ4|I1MDZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66241007..66242971) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGGAATCAGAAAGTGAATCAGCGGCAGCACAGAAATATGGGGGTGGAATTCTCACTTCAACCAAGCATGGTGTCAA GACAGAAGGATTTGTGCAAAGGGGACACTCTTGGTATGTTAAATGAAGAATTAGTACACATTAAGATGTTACAGCCACTA ATTAAGAAACTTTATGAATATCATATTGTTTTGTACTATTAACTTATCCATTTCATGTCTTGTACTATTGTATTGTCTTG AGAACTCAATCCCTTTTCTTGCAGGTATGTTGCAACCGATGTTCCAAGTGACTTTCTTGTTCAAATTGGAGAAACTAGCT TCCACTTACACAAGGTAGGTAGCTATATTTTGTTCTTGTTTCTGAAAGTTTGAATTTTTGTGCAATGGTTTTATATTAAG AGATGAAGGACTACTCATTTCTTTTTACTGATAAATATTGGGTCTATTTCTCTCCCTTTGTTTTGTTGTGAAAGTATCCT TTGGTATCTCGAAGTGGAAAGCTGAACAGAATCATATATGAATCAAGCATCCCAGATTTGAATAAGATAGTTATGGATGA TATCCCTGGTGGACCTGAGGCTTTTGAAATTGCAGCAAAGTTCTGCTATGGAGTTGCTGTTGATTTAACAGCAGGCAACA TCTCCGGCCTTAGATGCGCTGCAGAGTATCTAGAAATGACAGAGGACCTGGAGGAAGGGAATCTCATATTCAAGACAGAA GCATTCCTTAGCTATGTTGTTTTGTCTTCATGGAGAGACTCCATTGTAGTGTTGAAAAGCTGTGAGAAGCTCTCACCATG GGCGGAGAACCTTCAAATTGTTCGCCGATGCAGCGAGTCCATAGCTTGGAAGGCTTGTGCTAATCCAAAAGGGATAAGGT GGTCCTATACCGGAAGATCCGTAAAACATCCCAGTCCAAAATGGAATGATTTGAAAGACTCAAGCCCAAGTAGGAATCAG CAGGTTCCTCCTGATTGGTGGTTTGAAGATGCCTCTATTCTCAGGATTGATCACTTTGTTAGAGTTATTACTGCCATTAA GGTAAAGGGCATGAGATTTGAATTGATTGGTGCTGCAATAATGCATTACGCAACTAAATGGCTACCAGGATTGATTAGCG ACACGACAATCCCTGGCGACGAAGCGAGCAACTTCAGTATCAGTAATAGTAGTAGTAGTAGTAGCACCAGCTGGAAAGGT GGACTTCATATGATTGTGTCTGGACCCGGAACTAGAGATGACACCGCTTCAAGTCTTCAAGCTAAAGATCAAAGGATGAT TATTGAGAGCCTCATCAGCATTATTCCACCACAGAAGGACAGTGTCTCATGCAGCTTCCTTCTTAGGCTCCTGAGAATGG CAATCATGTTAAAGGTTGCACCAGCACTAGTTACTGAATTAGAGAAAAGAGTGGGAATGCAATTTGAGCAGGCTACACTG ACTGATCTTCTAATTCCTTCTTATGATAAAGGAGAGACTGTGTATGATGTGGATCTTATTCAGAGGCTATTGGAGCATTT TCTTGTACAAGAACTGACTGAAAGTTCTAGTCCAGGCAGAAAGTCCTTTTCTGAAAAAATTGTTGGATGTAACCTTAATG CCAAGGCAAGAGTGGCTAGGCTTGTTGACAGTTATCTCACTGAGGTGTCCAGGGATAGAAACCTTTCCCTCACAAAGTTT CAAGTACTGGCAGAAGCTTTGCCAGAGTCAGCTAGGACCTGTGATGATGGACTCTACAGAGCAATTGATTCCTATCTTAA GGTAATTATTTCCTGTTTCTATGGAAAAACGAAGCAAAAATGTTATTGATCTTGTTTTTAATGTTTTTGAGTTATCTAAG GTTATACTTCATTATACTTTGGTAAAACAACATGATGAAATTTGAAATGAAAATTTGGGTTTCATGATAACTTTGCATGC TTATTTATTGTATTCAATATTCATCATAATAAAGGGAAAAGTTGA
CDS sequence (LotjaGi6g1v0350200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGAATCAGAAAGTGAATCAGCGGCAGCACAGAAATATGGGGGTGGAATTCTCACTTCAACCAAGCATGGTGTCAA GACAGAAGGATTTGTGCAAAGGGGACACTCTTGGTATGTTGCAACCGATGTTCCAAGTGACTTTCTTGTTCAAATTGGAG AAACTAGCTTCCACTTACACAAGTATCCTTTGGTATCTCGAAGTGGAAAGCTGAACAGAATCATATATGAATCAAGCATC CCAGATTTGAATAAGATAGTTATGGATGATATCCCTGGTGGACCTGAGGCTTTTGAAATTGCAGCAAAGTTCTGCTATGG AGTTGCTGTTGATTTAACAGCAGGCAACATCTCCGGCCTTAGATGCGCTGCAGAGTATCTAGAAATGACAGAGGACCTGG AGGAAGGGAATCTCATATTCAAGACAGAAGCATTCCTTAGCTATGTTGTTTTGTCTTCATGGAGAGACTCCATTGTAGTG TTGAAAAGCTGTGAGAAGCTCTCACCATGGGCGGAGAACCTTCAAATTGTTCGCCGATGCAGCGAGTCCATAGCTTGGAA GGCTTGTGCTAATCCAAAAGGGATAAGGTGGTCCTATACCGGAAGATCCGTAAAACATCCCAGTCCAAAATGGAATGATT TGAAAGACTCAAGCCCAAGTAGGAATCAGCAGGTTCCTCCTGATTGGTGGTTTGAAGATGCCTCTATTCTCAGGATTGAT CACTTTGTTAGAGTTATTACTGCCATTAAGGTAAAGGGCATGAGATTTGAATTGATTGGTGCTGCAATAATGCATTACGC AACTAAATGGCTACCAGGATTGATTAGCGACACGACAATCCCTGGCGACGAAGCGAGCAACTTCAGTATCAGTAATAGTA GTAGTAGTAGTAGCACCAGCTGGAAAGGTGGACTTCATATGATTGTGTCTGGACCCGGAACTAGAGATGACACCGCTTCA AGTCTTCAAGCTAAAGATCAAAGGATGATTATTGAGAGCCTCATCAGCATTATTCCACCACAGAAGGACAGTGTCTCATG CAGCTTCCTTCTTAGGCTCCTGAGAATGGCAATCATGTTAAAGGTTGCACCAGCACTAGTTACTGAATTAGAGAAAAGAG TGGGAATGCAATTTGAGCAGGCTACACTGACTGATCTTCTAATTCCTTCTTATGATAAAGGAGAGACTGTGTATGATGTG GATCTTATTCAGAGGCTATTGGAGCATTTTCTTGTACAAGAACTGACTGAAAGTTCTAGTCCAGGCAGAAAGTCCTTTTC TGAAAAAATTGTTGGATGTAACCTTAATGCCAAGGCAAGAGTGGCTAGGCTTGTTGACAGTTATCTCACTGAGGTGTCCA GGGATAGAAACCTTTCCCTCACAAAGTTTCAAGTACTGGCAGAAGCTTTGCCAGAGTCAGCTAGGACCTGTGATGATGGA CTCTACAGAGCAATTGATTCCTATCTTAAGATTGTATTCAATATTCATCATAATAAAGGGAAAAGTTGA
Protein sequence (LotjaGi6g1v0350200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWESESESAAAQKYGGGILTSTKHGVKTEGFVQRGHSWYVATDVPSDFLVQIGETSFHLHKYPLVSRSGKLNRIIYESSI PDLNKIVMDDIPGGPEAFEIAAKFCYGVAVDLTAGNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVV LKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWSYTGRSVKHPSPKWNDLKDSSPSRNQQVPPDWWFEDASILRID HFVRVITAIKVKGMRFELIGAAIMHYATKWLPGLISDTTIPGDEASNFSISNSSSSSSTSWKGGLHMIVSGPGTRDDTAS SLQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMAIMLKVAPALVTELEKRVGMQFEQATLTDLLIPSYDKGETVYDV DLIQRLLEHFLVQELTESSSPGRKSFSEKIVGCNLNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDG LYRAIDSYLKIVFNIHHNKGKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 491 | 487 | 5.3E-272 | ||
| PANTHER | 5 | 491 | 487 | 5.3E-272 | ||
| SUPERFAMILY | 33 | 131 | 99 | 5.26E-15 | ||
| CDD | 37 | 141 | 105 | 2.79142E-55 | – | |
| Gene3D | 39 | 185 | 147 | 4.8E-7 | – | |
| Pfam | 46 | 131 | 86 | 1.7E-4 | ||
| ProSiteProfiles | 46 | 114 | 69 | 9.992 | ||
| SMART | 46 | 144 | 99 | 1.3E-4 | ||
| Pfam | 228 | 492 | 265 | 2.1E-89 | ||
| ProSiteProfiles | 228 | 502 | 275 | 65.453 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0350200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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