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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0351800 |
| Transcript ID | LotjaGi6g1v0351800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyl-CpG-binding domain-containing protein 8; TAIR: AT1G22310.1 methyl-CPG-binding domain 8; Swiss-Prot: sp|Q9LME6|MBD8_ARATH Methyl-CpG-binding domain-containing protein 8; TrEMBL-Plants: tr|V7BR06|V7BR06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66385810..66389145) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTAACAGGAAATGAAATCACAAGTGAATGTGTTCCATTACAGTAACTAAACTGTTGTTCACTTCTTCTTCCATTTCC TCACGTTCCCCTCTCTCTCTCTAAAATCTCACTCTCTCTCTCTAAAATCTCAGAAGAAGATTTCAATGGCGAACGAAAAA GCAGTGGTGAAGATGGAGTGGTTAACTTCCATAGACACAACCACTCTCTCCCACTCTGAACTTCACGCCCTTTCTCTCTC CTCTCTCCCAACCTTCGATCCCACCCTCACCCCCATAATCGACCCTACCTACTTCAACGAAAGCTCCGGCACTCACCGTC AGTCCTACGCCACACCTCGCCAGCGCCGCCGATGCCGTGTCTCCGCCCTCCTCCCCTCTCCCACCCCTTCCGACCACCCC CGCATCATCGTCGACTATCTCAAGCACCTCATCAGAGAAGACCCCAAGTTCGACCAGGTGGAGCTCCTGCAACCACCGCA ACAACGCCTCATCGTTCCCGAACCTCCAATCGGTGAGGTGAAGAGGAAGCGAGGGAGGAAGCCCAAGGTCAGAGTGCATC TGGAAGAGTGTTACAGAGGAATGGAGAGGGTGAACAAGAACGGCGTTCCGGTTGAATTCTCCGCGCTGGCCAGCGCGGAG AATCCGTTCGCGGAGGAGCTGGCTAGGCGGACGGAGGGGCTGCAGGGGGAAGAGCAGCTGTTAGGGTTTTTGAGGGATTT GGTGGGGCAGTGGGGAAGCAGGAGGAAGAAGAGGAGGATTGTTGATGCTGCTGATTTCGGTGATGCCTTGCCTGTTGGTT GGAAGCTTCTGCTCGGTTTGAAGAGAAAGGATGGTCGTGCTTGGATCTATTGCCGCAGATACATCAGGTCACTTTTTTCT ATTACCTTAGGAATATGATATCAACACTTATATATATATCATTTGCATCACAATGCTGTTAAATTCTTGACATTATGGGA CTTGCTTGCTATAAATTTGGAAACAAAGCTTTAATGTGTTTTGCCTATGAAAAGTTAAGGTAAGGTGAATAAGGACTTAT CCTTTTATATAATTATGGTTGCGTTTGGAAGAGTTTATTTGAGCTATTCGTATAGTATTAACATTTATGCAAGTGTTGCC AACATGGGTTGGCAGAGCTAGCTTCAGGTTTCGGGTTTAACTCTCACCTCCCCATAGGTTGAGGGTTCGAATACCTCTGG GATCAATGAAATCCCAGTTGGTGGGCAACCCTCCTCGGGGAGATCCCTCGACGCTCCCCTCTGCGCCCTGCCCGGTAGTC TGGAGGTGCTTATCTCTTCGTAAAAAAACACATTTATGCAAGTGTTTGAGAAAACTTGTGAAAAGAGCTTATAGGTTTTG AGCTTATTTCATAAGCTGCCCATAATAGCTTATGAACAAGCGCGCCGTTTATACATATCTATCAGCTTCCAAATTAGCTT ATGAATAATCGCTTAAGAGGTTTTTGTCTCTTTCAGTACTTATGTGTTCTCTTGTTTGACATTCTCCAGCCCTAGTGGAC AGCAGTTTGTGTCTTGCAAGGAGGTTTCGGCGTATTTGCAGTCCCTTTTCGGTCAGGCTGAACCACAATTAAAAATCAGT TGTAGGAATGAAAATATTCTGCAGGAGCAGAGAGTGACTACGGAGAACGTAAGTATACATGCACACCACCCTTGTTGATC TGTTGTGATATTGTTGCAGTGATTTATGGGGTTGTGCTGCAGTCTGCAGGTGTTACTGGTGAGGATCAAGATCAGAGGCA GATTGCAGCGACTAACTCGGATGTGCCTGGTTTATCTGTTTCTAATGAACGAGTGAAGGAAGTTTCCTTGTTAGGGATTG AGAATCTTGCAGATGTGCAAATACATGACCTGTTTGAATGTCACAAATGCAGCATGACCTTTGGTGAGAAAGATTCATAC TTGCAGCATCTGTTGTCCGTTCACCAGAGGACGACCAGGCGGTACCGACTTGGTTCTACTGTTGGAGATGGAGTTATAAT TAAAGATGGAAAGTTTGAGTGCCAATTCTGCCATAAGGTGTTTCTAGAAAGGCGTCGCTACAATGGTCATGTCGGGATCC ATGTTAGGAATTATGTGAGGAGAGTTGAAGATTCACCAGGTCAGACAAATGTCCAAAGAGCAGACAAATCTCCGGTCCTG GAGGAGGTGCCTTCAAGGATCTCTAAGATGGATGCGCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCAT GGAACCCCATAATTCAGCTAAAATGAATGTGATACCCGATTCTGAAATTGCTGTTGGTGACTTTGACCAAGACATGGACT TTGAATATCCTACCGATGTGGTGGATGATTTAAATCTGCAATGTAGCACGCATTTACTCATGAATGGAAAAGGAGATGAA ATTGATGATTATAACCAAGTTATTGATGCAGAGGGGGTTACTCTTCTAGATAGCATGGATTTGTCATATGTAAACGAGCA AAATGTCCATGTATCTGGTACTTCAAAGGGAAAAGAAGATGTTGCGTTGACAGCTGCGGGGTTTGGCCAGTCTGGGATTG ATTTGGAAGTGGTTTCTCAAAGCCCTTTATTTCCTTTATCTGGTTGCACTAACAGTAAAGGGCAATTCAAACTTGATGAA GACAATAGCAAGAACAGTGAGTTGAAATTTAGTTTAGATGGCTGCAAGGATGTACCTGTTAGGGCTGATTTTCAAGAGAT AGTCATGTCAGTTTCTGAAGAAGTTGTGGTCCATTCTAGCATTTCTAACCGCTCTATATCCACAGAACAACCTCTGGATT GTTTTCCAGCCTTCAGCTCTGATAAGATATAAGGCATAACCTATGGCGCCTTTAATGTTAGGGTTTCATGTATGTTGAAA AACTGAGGGAATATTCCTACACCTATCATATCAAGGTCCTCTCAGAAAGTGATTGATTTGAGGCTAGCATGTATTCTGGT TTTATGTTGTATTGAACCATTGCTGTAATATTACAAAGCCCTTGGTGCACTTTTCTTGGATTTTCAACACATCCTGTTTA TTGTCTAGGCAATTATCCTCTAAGTAAAATAACTGTAAAATAACGGTTGATGTTTTGCTTAGCATGAGGACATACATCTG TTGACAGGAAAAGTTATGCTGGCTGCACATTAGAATCTACTCAGAGGAGGACTTGTTCTTCAACTTAGGTTGTTCAATTT CCTGAATCATTCTAATTTCTAACAACAACTTCCGTTCTGACTTTATGTTACCATGTGTAAAATTCGGACCCCCCTCAGAA TGAATGAAAGCAATTCCTTTGGCAGCTCCAAGTGCAAACTTCAATCTTGAATCCCA
CDS sequence (LotjaGi6g1v0351800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACGAAAAAGCAGTGGTGAAGATGGAGTGGTTAACTTCCATAGACACAACCACTCTCTCCCACTCTGAACTTCA CGCCCTTTCTCTCTCCTCTCTCCCAACCTTCGATCCCACCCTCACCCCCATAATCGACCCTACCTACTTCAACGAAAGCT CCGGCACTCACCGTCAGTCCTACGCCACACCTCGCCAGCGCCGCCGATGCCGTGTCTCCGCCCTCCTCCCCTCTCCCACC CCTTCCGACCACCCCCGCATCATCGTCGACTATCTCAAGCACCTCATCAGAGAAGACCCCAAGTTCGACCAGGTGGAGCT CCTGCAACCACCGCAACAACGCCTCATCGTTCCCGAACCTCCAATCGGTGAGGTGAAGAGGAAGCGAGGGAGGAAGCCCA AGGTCAGAGTGCATCTGGAAGAGTGTTACAGAGGAATGGAGAGGGTGAACAAGAACGGCGTTCCGGTTGAATTCTCCGCG CTGGCCAGCGCGGAGAATCCGTTCGCGGAGGAGCTGGCTAGGCGGACGGAGGGGCTGCAGGGGGAAGAGCAGCTGTTAGG GTTTTTGAGGGATTTGGTGGGGCAGTGGGGAAGCAGGAGGAAGAAGAGGAGGATTGTTGATGCTGCTGATTTCGGTGATG CCTTGCCTGTTGGTTGGAAGCTTCTGCTCGGTTTGAAGAGAAAGGATGGTCGTGCTTGGATCTATTGCCGCAGATACATC AGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAGGAGGTTTCGGCGTATTTGCAGTCCCTTTTCGGTCAGGCTGAACCACA ATTAAAAATCAGTTGTAGGAATGAAAATATTCTGCAGGAGCAGAGAGTGACTACGGAGAACTCTGCAGGTGTTACTGGTG AGGATCAAGATCAGAGGCAGATTGCAGCGACTAACTCGGATGTGCCTGGTTTATCTGTTTCTAATGAACGAGTGAAGGAA GTTTCCTTGTTAGGGATTGAGAATCTTGCAGATGTGCAAATACATGACCTGTTTGAATGTCACAAATGCAGCATGACCTT TGGTGAGAAAGATTCATACTTGCAGCATCTGTTGTCCGTTCACCAGAGGACGACCAGGCGGTACCGACTTGGTTCTACTG TTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAATTCTGCCATAAGGTGTTTCTAGAAAGGCGTCGCTAC AATGGTCATGTCGGGATCCATGTTAGGAATTATGTGAGGAGAGTTGAAGATTCACCAGGTCAGACAAATGTCCAAAGAGC AGACAAATCTCCGGTCCTGGAGGAGGTGCCTTCAAGGATCTCTAAGATGGATGCGCTCATTGAAATTGCTCAAAACTCTA TTATGGAGGATTCTGTCATGGAACCCCATAATTCAGCTAAAATGAATGTGATACCCGATTCTGAAATTGCTGTTGGTGAC TTTGACCAAGACATGGACTTTGAATATCCTACCGATGTGGTGGATGATTTAAATCTGCAATGTAGCACGCATTTACTCAT GAATGGAAAAGGAGATGAAATTGATGATTATAACCAAGTTATTGATGCAGAGGGGGTTACTCTTCTAGATAGCATGGATT TGTCATATGTAAACGAGCAAAATGTCCATGTATCTGGTACTTCAAAGGGAAAAGAAGATGTTGCGTTGACAGCTGCGGGG TTTGGCCAGTCTGGGATTGATTTGGAAGTGGTTTCTCAAAGCCCTTTATTTCCTTTATCTGGTTGCACTAACAGTAAAGG GCAATTCAAACTTGATGAAGACAATAGCAAGAACAGTGAGTTGAAATTTAGTTTAGATGGCTGCAAGGATGTACCTGTTA GGGCTGATTTTCAAGAGATAGTCATGTCAGTTTCTGAAGAAGTTGTGGTCCATTCTAGCATTTCTAACCGCTCTATATCC ACAGAACAACCTCTGGATTGTTTTCCAGCCTTCAGCTCTGATAAGATATAA
Protein sequence (LotjaGi6g1v0351800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANEKAVVKMEWLTSIDTTTLSHSELHALSLSSLPTFDPTLTPIIDPTYFNESSGTHRQSYATPRQRRRCRVSALLPSPT PSDHPRIIVDYLKHLIREDPKFDQVELLQPPQQRLIVPEPPIGEVKRKRGRKPKVRVHLEECYRGMERVNKNGVPVEFSA LASAENPFAEELARRTEGLQGEEQLLGFLRDLVGQWGSRRKKRRIVDAADFGDALPVGWKLLLGLKRKDGRAWIYCRRYI SPSGQQFVSCKEVSAYLQSLFGQAEPQLKISCRNENILQEQRVTTENSAGVTGEDQDQRQIAATNSDVPGLSVSNERVKE VSLLGIENLADVQIHDLFECHKCSMTFGEKDSYLQHLLSVHQRTTRRYRLGSTVGDGVIIKDGKFECQFCHKVFLERRRY NGHVGIHVRNYVRRVEDSPGQTNVQRADKSPVLEEVPSRISKMDALIEIAQNSIMEDSVMEPHNSAKMNVIPDSEIAVGD FDQDMDFEYPTDVVDDLNLQCSTHLLMNGKGDEIDDYNQVIDAEGVTLLDSMDLSYVNEQNVHVSGTSKGKEDVALTAAG FGQSGIDLEVVSQSPLFPLSGCTNSKGQFKLDEDNSKNSELKFSLDGCKDVPVRADFQEIVMSVSEEVVVHSSISNRSIS TEQPLDCFPAFSSDKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 468 | 459 | 2.1E-192 | ||
| PANTHER | 10 | 468 | 459 | 2.1E-192 | – | |
| ProSiteProfiles | 205 | 277 | 73 | 9.924 | ||
| SUPERFAMILY | 211 | 260 | 50 | 1.63E-7 | ||
| Gene3D | 327 | 410 | 84 | 2.7E-6 | – | |
| ProSiteProfiles | 338 | 366 | 29 | 9.162 | ||
| SMART | 338 | 361 | 24 | 0.031 | ||
| ProSitePatterns | 340 | 361 | 22 | - | ||
| SMART | 385 | 407 | 23 | 0.37 | ||
| ProSiteProfiles | 385 | 412 | 28 | 8.642 | ||
| ProSitePatterns | 387 | 407 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi6g1v0351800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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