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LotjaGi6g1v0354600.3

Overview

Field Value
Gene ID LotjaGi6g1v0354600
Transcript ID LotjaGi6g1v0354600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT2G13810.1 AGD2-like defense response protein 1; Swiss-Prot: sp|Q9ZQI7|ALD1_ARATH Aminotransferase ALD1; TrEMBL-Plants: tr|W0BWR0|W0BWR0_LOTJA L,L-diaminopimelate aminotransferase; Found in the gene: LotjaGi6g1v0354600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:66646709..66650443) extracted from Lotus japonicus Gifu genome v1.2.

AGTTCTATGTTTAGTCCAAATGCTTTGCAATCTATCATGTTAGTGACAAGGCAACAACAGTACTGGATAATGTTAACTTA TAGCAACAGACATCAGTTATCTTCTGTTTCCCCTTGCTTTTAACTATATGATAATTGACTCTGGTATATAATTACAGGTC GTCATGCACATTGAAGAATCAAAGATTGAGAATTGGTATGCATATATAATTCATACTTGTTTGATTCAATTTTTCATTTT TATGGTTTTATTTTCTTTATGCCCTTGGCCTTAGACTTATCATTTGTGATTGTCATGTGCAGGACACCGCACGAAGGTAC CCCGAAATGTAAACATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGGTGCTTTTCAATAATATTTCCACTTCTTGA TTGTTTGTCTGAATCTTGTTTATCTCATGGAAATGCTGTTTTCAATTTTTATTTTTATTTACCATCTCAATTGAACAGAT TGTGCACTAAGTTTCTTTTTACCATTAGTACATTGCTACAATGAAAAAACAAATTCTGGGGACCATTTGTACAGATTTTT CACTCCCTTGGTCCTTGTATATTCATTTTGTCATATGACATGCCTTACAATTTTAAGTTATATGTGCTAAAAGCAAATTA CTATCCTGATTGCTTCAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACACGCAAATGTGATAGATCTTGG AATTGGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATGTAAGTTACAAAGGTTCTTTCTGTT TGGTCATCACATTTTTTTCCCTATATGTTGGTCCCTATATTCACTTATGTGGATTTTGGTTCCTGCTGCTAAAGTATGGT CCTTATATTTTCCTTGCATTTGGGTTGCTAAGGAACCCTTAGTTATTTGTGATTTCTAGAACTAAAAATAAAGCTAAGTG AATGCTTTTAATTTTGGTTTATTGACAGATTTAGGTCCATCTTTTTCCTCTATTAACTTGAGGAAGGAGAAGAGGTAACT TGTTTGAGAAATTAATATATTTTTGCAGTTTGTGCATGGCCTTTCAACAGAAAAAGGTTATAAAGGATATGGACCTGAGC AAGGTGAAAAGGTAACTTGTTTGTGAAATTAATATATTCTACTCTTTAAGATCCCAGAAATAAAATGTCATATCAAATGT ATAAACTTCTTTTTCTTGTTATGCATGATGTTGGCCCCAATATGATGCGATAGTAAAGTGCTTCTGTATTGAAGTATATG CTAGTATCAACCTTGAGTCTGCAATATCTTTATCTACTTACTTCAACTTCCACTTATGGCATAGGAGATCAATGTACCAT ATGCCATTCAATTAAAATGTATATATTCTGGCAAAATGAAATTGCAGGCCTTGAGGAAAGAAATTGCTGACACAATCTAC AAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTTCTCGTCTTCAGGTATTCCA TAAAATCATAATCACAGTTGTTTGTTGCACTCTACTTTATTCTTTTTCCCTTTTCAAATTCTTAGCAACTTTTTACCATT TCTGTACTAATACTATTTCTGTGGAGAGTTAGTTACTTGGTGTCTCATAACACCTGTGATAGTCTAATACCATTTCTATA TTCTTCATATTTTGACGTTTTTCATATATCATCTTGGTACAGAACTAGGGATTGAGGGACCAATTTCAGTAAAATTCCTA TTATTGTTACTTTCTTGTGATTTAGTTCAATTAGTCTCATTCTCATTGTAAAGTAAGTACCTTTGCTAAGTGCTTAAATT AATATGAAGTGCTGACTTTGATTTGTCTCAATACCTGCAGCTGCTTATGGGTCCCAATCTGAAGATATTTGTACCGGATC CATCCTTTCCGGTATTATAATTTCTACGAGATTCATCTATCTAATCAATGTGATCTGTTAGAAATATAATATAAAATCAT TCATGTTTCTTCGCCCAACTGTTTTCATTTTGTTTTGTGTTTTAATAGTACAAAAAATAGTGATAACAGTGCCCTTAGCC TTCCATCTTTGCTTCTTCTATCTTTTCACTATAACGTGCGACTTGTTTCAATGTGATCTCCAAGTGAATGCATGCTTGCA TCACATCATCAAACATATTGTTTTTGATGATCTTGAATTCTTCTGAGGCAGGCCTACATAGATTCAAGTGTCATAATTGG CCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACATAGAATACATGACATGTGGACCTCAAACCAACTTCT TTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAATCCCACTGGTCATGCGGCAACA AGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTTTGACTCTGCATATTCTGCCTA TATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTATGTCTTGCTCGTTTATTTCGCTAAG TCCCATTTTGTTATTTTCATAAGCATCTTGTAAACCTTTTCTTTCAATCCAGATACAGGATTTGCCAATTGGCACATGAA TTATTTAGTTTCACTTTTTCAGGATGTTTGGATGGAGTGGTAAGTAGTTTGGGATTTGTTTTTGAAAGTTGAAACAATGC AGTTGGATGGTTAAGGAGGGAGACCCAAGCCACTCCATACTACTATCCCTTTTTTCATAATCCCCAAATTTTGGAGAATG GAGCTTCTTTCTTTTTTAGTTGTCATTTACAAATTTCATTCCTAGTTCTCTAAACTCTTTTCACACCATTCTACACTTTG ATTTTCCTTAGTTGCTCTAAACAAAAGTTTGACTGGTTTCCAAAATTTCCCTGCCTCCCTTGTGTTTTTTTTCCTGGTTA ATCCTCGTATGTGGTCGATTAGTCTCACTACTTACAGGGCATTTTGTTTTGTTTCTTGCATGCACTAATTCCACAATGGC AAGCTTAACCTCTTCCATTCTTCATTATGCTTTAAGGTTGCAATTGAAGTCTCGTCCTTCTCAAAATTTGCTGGCTTCAC AGGCGTACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCCCTGTTGTGCATGATTTCAACC GCATAATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCATGCCTTTCTCCCGAGGGTCTC AAGGTAAAATTCAAATTCCCTAAGAATCCATTTAACTTGCCAAATTCCTGCTTTCAAGTCTCATCTCTAGTTTAGTTCCT AGACTAAACCCTATGAAAATTTTCTGGCATTGGTGTGATACTTGCTAAATATTATTTTGGAAAATCTCAGGCCGTGCAGT CACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTAACTTCTGTTGGTCTGAAAGTTTATGGTGGT AAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGATGTCTTCGCTGAAATTCTTGAGAAGACACA CATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATATAAGAATTAGTGCTTTCGGCCAGAGGGATT CCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAATAGGGGAAAACTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0354600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTAGTCCAAATGCTTTGCAATCTATCATGTTAGTGACAAGGTCGTCATGCACATTGAAGAATCAAAGATTGAGAAT TGGACACCGCACGAAGGTACCCCGAAATGTAAACATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGATTCAAAGAC ACCAGCTTATGCACTTAGAGAAGTATCCACACGCAAATGTGATAGATCTTGGAATTGGTGATACTACAGAACCCTTATCA ACTATTGTAACATCAAGCATGGTGGATTTTGTGCATGGCCTTTCAACAGAAAAAGGTTATAAAGGATATGGACCTGAGCA AGGTGAAAAGGCCTTGAGGAAAGAAATTGCTGACACAATCTACAAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTT CAGATGGTGCACAGTGTGATATTTCTCGTCTTCAGCTGCTTATGGGTCCCAATCTGAAGATATTTGTACCGGATCCATCC TTTCCGGCCTACATAGATTCAAGTGTCATAATTGGCCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACAT AGAATACATGACATGTGGACCTCAAACCAACTTCTTTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTT GTTCTCCAAACAATCCCACTGGTCATGCGGCAACAAGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGA TCAATCATTATCTTTGACTCTGCATATTCTGCCTATATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGC CAGAGAGGTTGCAATTGAAGTCTCGTCCTTCTCAAAATTTGCTGGCTTCACAGGCGTACGCCTTGGTTGGACTGTGGTCC CTGAAGAACTCTCATATTCAAATGGTTTCCCTGTTGTGCATGATTTCAACCGCATAATGTGCACATGCTTCAATGGAGCA TCCAACATAGCTCAGGCCGGTGGACTAGCATGCCTTTCTCCCGAGGGTCTCAAGGCCGTGCAGTCACATGTTGACAACTA CATGGACAATGCAAGAATTTTGGTCGATGCTTTAACTTCTGTTGGTCTGAAAGTTTATGGTGGTAAAAATGCACCTTATG CTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGATGTCTTCGCTGAAATTCTTGAGAAGACACACATGATTACTGTTCCG GGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATATAAGAATTAGTGCTTTCGGCCAGAGGGATTCCATCATTGAAGCCTC AGAGAGATTCCAATGCCTTGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0354600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFSPNALQSIMLVTRSSCTLKNQRLRIGHRTKVPRNVNMEKLQHGYLFPEIQRHQLMHLEKYPHANVIDLGIGDTTEPLS TIVTSSMVDFVHGLSTEKGYKGYGPEQGEKALRKEIADTIYKDLGIKPSEVFVSDGAQCDISRLQLLMGPNLKIFVPDPS FPAYIDSSVIIGQAGEFVYETGKYKNIEYMTCGPQTNFFPDLHTASRADIIFFCSPNNPTGHAATRKQLEQLVDFAKENG SIIIFDSAYSAYITDDSPKSIFEISGAREVAIEVSSFSKFAGFTGVRLGWTVVPEELSYSNGFPVVHDFNRIMCTCFNGA SNIAQAGGLACLSPEGLKAVQSHVDNYMDNARILVDALTSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKTHMITVP GSGFGPGGEEYIRISAFGQRDSIIEASERFQCLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43144:SF5
23 432 410 2.4E-231 –
PANTHER
PTHR43144
23 432 410 2.4E-231
IPR019942
TIGRFAM
TIGR03542
35 431 397 6.7E-154
IPR019942
SUPERFAMILY
SSF53383
46 430 385 4.65E-72
IPR015424
Gene3D
G3DSA:3.90.1150.10
50 429 380 5.9E-137
IPR015422
Pfam
PF00155
66 416 351 2.1E-41
IPR004839
CDD
cd00609
68 431 364 3.14432E-77 –
Gene3D
G3DSA:3.40.640.10
77 332 256 5.9E-137
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0354600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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