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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0357400 |
| Transcript ID | LotjaGi6g1v0357400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | COP9 signalosome complex subunit 8; TAIR: AT4G14110.1 COP9 signalosome, subunit CSN8; Swiss-Prot: sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8; TrEMBL-Plants: tr|I3SY35|I3SY35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0357400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66910578..66918524) extracted from Lotus japonicus Gifu genome v1.2.
TCTACATGGTCTGAAATTACTAGGAGTTTGTGTGGTAGAGGGTTGCATGCTTAATGGGCTTCTATAACTACATCCTTTAT GGGCCTCGAGTTACTAGGCCAAATATAATTAGTTAATATTATTTCTATGTTTATTTCTAGTTTGTTATTTAGATCATGTT CTAGAGTATTCTACTTTTTATGATGGTGCCACATGTAAGGTCACCTTTCATCCCTTAGAGTAGATAGTTAGTATAAGTTG TATGGTTTCCATTATGAAATATTAACAAGAAAATTGACAAAGTTTTATTTTATCTTCTTTTCTTTAGTTTTCTTTTGGTT TTCTTCCTTTGATTTTACTTGGTAGAGTTTCTCTCTACCAATTTGGTGCTTTCATTATCGATCTCTTTCCTCCATTACAT CAATGGTGCTCAGCTATGATCTGTTATCATCCATCCTTGCAGCACAACAAGATCCCAGATCCATTTTCTACGCCCATTCT TCACCTTCCTACCCTGCCATTAATGGTGGATTTTCAAGACCAATATGTGCAGATCCTTGGTTCCTGGATGAAGTATCATA CCAGCACACCCAGCCACCTACAATCCCACCACAACCTCCTCCCACTCATTTTGCCCAACAGATTCCATGTTCACCACCCA CCTCTTCACCCACGTTGAAACTCATCAAGTTCTCTGGATCGGCTCCAAATTTTTGGCTGCTAAACACAGAGTTGTATTTC CTACAGCACCCATGGCCACTGGAAACTCGCTTTGATTTTATTGCCCTGCATCTAGAGGGATTTGCCTTGACATGGTTCCA ACTGTGGCGCCACCAACTTGATTCATGGGACAAATTCCGAGAAGTGTTCAAATTTCAGTTTATCACATGCAAATTTGAGC AAAATGGAGCCAGCAGATCTGGGAAATCTTCTTCAGTGTCCAACACATTACAACCCATGACAGCTCAGGCAGTGGAATCC AATGCTACACCAATGGCGAAGCCTCAGTTTAGCACTACCAGATCTTTGTTTGAGGCTGATACAACGATGGGTCACAAAGA CAACCTTGAGAAAGTTGCGAACCAGAGAGGTGATTTAGGCAATGAGCCTACACTGGTGAAGAGCTCTGTTTCCACATCTG TGCATAGTCAACCAACCCAAGCTCTTACCTCCACTGTGGATCAGGATTCAATGGCAGTACCAGTGACTGATCCCAATACC TCATCTGGAGACAAATATGAGGAGACTTCATATGTGGACCATGACGACCCAAGGTGTGAGCACATTACGGCAGAGGAAAA GTATTCCCTGACTACACTTTCTATTGGTCACCATGTGTTTGACAAAATGCATGAGAAGAAGTTTAGGCATAACAATGTTG ATGCTTATTTTGGGAAACGTTTTCTAATTGAATTACATGGAATTGTTATCACACCCTTTGATCCTGGAACTGTTCATTTA CTTCCAACTTTGGGCAATGGTCACGTAGCTTCATTTGCTATTGAAGACCCAAAGTTGAGTTACCTACATCCTATTAAATT GCCCTCTATCACTCAGCCTGCTAAAGTTTTTCTCCAAATCAATCTTGGCTGGCTTGGTAGGCATTCACACTGCTTGGATT ATTGGTTTATTACCGGTGTCCACACTCAGACTTCTACTAAGCATCTCATGTCAAATTGTTTCATCACAGACTTGGTCCCT TGTTCAATTTTTTCTAAAAATGGCATTGGTTCTAAGACTACACCCCAACTGTTTGATAAAATGCATGAGAGAAAACTATT TGACATAATGCATGAGTTGGAAGATAAAGAGAAACAAGTTGACTCTACTTATGCTCTTGACTCTCTTTTATTTAAGTTCT TGGCTAAACCTGGCTTGTTCATAATTTCTTTTGACCCGGGAATTTGTACTCACACTCTTAAGCTAGCATATGGGGCCTTA AATACATGTGTTGCTGGAGATTTCACATTAAATCACCTAGTGTTTGAGGAGTTGCTTGAGAAAGAGTTGGTGCAGAAAAA TAATGAGGCTCAATTTGAAAAGCAAGTACATGATTATGATTACTATGACCCTGGACTTGTTGCTGTACATTCTATGTTGC CTTATGGTTACTCTTCAAATGGTGATAAGGGAGTATCATCTAGTTGTCAAGGATCTAGTATTCCTCACGCCATTCTTGGC TGGTTTTTCGATTCATGCGTTTGGCCTACACTATCTGTCAATGGCCTTTCTGATGAACTCCTTGCTGCTATGTTCACATC AGCTCAATTGGGTCATTCGTTTGATGCTGATTCAAGGCCTCAGACACTTGAATTTTTGGAGCTCACGTCTGATCAGATTG CCGCTAGAAGACATGCGCTACATGAATTTTATCCTCAATTATTTGACCCTGGAATCATAAACCTGGAACATTTGTGCCAA GTTGTTTTTCAATTATTAGCTGCATATCCACAGAGGCTACCACTTGGGGAACAAAGAAAAGATGAGATGAAGAGGTCTTT TAGAGAGGAATGGTTCATTATGGAAGTCCAACATCTCAATTTCAATCACGGCCAGTTTCCAGTGCAAGCTGCAAAAGCAC ATCCCACTCCTACGCCGGTGTCTTCACAAGAAATACTCAAATTCTATCTGTTTCAACCCTTATTGTGGAGAGATCTGACC CATGCATTTGTAGCCTTGCTGGAGCAAGTCAAGTGGATAGTACTCAATATATCAAATGTTGAGGTTGATTTGGCTATGTT TACTGGATCAAATGCAAGCACCATTACACAGTCTACTGTTACTTATGTGGGTCTTGCAACGTTGAGCTTGTTTGGACAAT TCAACCCATATTCAATGATCCATTGCCTTCCCCACCTTTATTTCTGGATCATGGATTATTATTCTGATGGGTCAACACAT GTATGGGTTCTCCAACACAGCTTGCTAGTGTGGCATTGGGTCAACAAATGTATGGTCTTTATGTGGCAATGTCACTCTAC TGGTGTTAGCTTTATATGGCATAACATTGTTGTGGACAAGACCATTAGAGCACCTTTGGCAATAGGACGTGGCATTGGGA CTTGTTTCTCTGAAATGGAATTAGACAATACATATTTAGTTTGTTCCATGTCAGAGTTCACTTCACAGACTCTGTACTCC TTTCATGGGCTTTGGCATAGCACTACACTTCTTGAGTGGATTCTTATTATTGCTTGGATAGTCTATTTCTCATCCTTGAG GACAAGGATGTTTTCAAGGGGATGGTAATGGTAGAGGGTTGCATGCTTAATGGGCTTCTATAACTACATCCTTTATGGGC CTCGAGTTACTAGGCCAAATATAATTAGTTAATATTATTTCTATGTTTATTTCTAGTTTGTTATTTAGATCATGTTCTAG AGTATTCTACTTTTTATGATGGTGCCACATGTAAGGTCACCTTTCATCCCTTAGAGTAGATAGTTAGTATAAGTTGTATG GTTTCCATTATGAAATATTAACAAGAAAATTGACAAAGTTTTATTTTATCTTCTTTTCTTTAGTTTTCTTTTGGTTTTCT TCCTTTGATTTTACTTGGTAGAGTTTCTCTCTACCAATTTGGTGCTTTCATTATCGATCTCTTTCCTCCATTACATCAAT GGTGCTCAGCTATGATGTGTTATCATCCATCCTTGCAGCACAACAAGATCCCAGATCCATTTTCTACGCCCATTCTTCAC CTTCCTACCCTGCCATTAATGGTGGATTTTCAAGACCAATATGTGCAGATCCTTGGTTCCTGGATGAAGTATCATACCAG CACACCCAGCCACCTACAATCCCACCACAACCTCCTCCCACTCATTTTGCCCAACAGATTCCATGTTCACCACCCACCTC TTCACCCACGTTGAAACTCATCAAGTTCTCTGGATCGGCTCCAAATTTACACACCCTAATCTATTTCTTAAAGGGGTATG TATATAAAATTATAAAATTATAAATAGTAAAAAGTGTGCAAAGATAAGATACAATCCTCAGTGATGGGTTGCATTACAAT GCAACTGGGCTTACTACCGATCTTATATGGGCTGACTCATGGGCCTTACACTTTCTTGGGTTCTCAGTTTGAGCAAGGTA AAAACGACGTCGTTAGCGTAGATGATACTCTAGTTATACAGAAGAGTAGAAACCGTTCTCACTAGGAGTTGGAGAAGGTG GAACCAGTTGTGGTTTTCTCCTCCGTCGTCGTCGTCGAATCAAGGTATGGGTATGACTTCGCCAATGCCGTGTTAGGTTT CCCATTCCTAACTTGTACCGTGTTATTCATTGTTCGATTCATATTTACAGGGTTCAGGGATAGCGAATTTTGAGAGTGAT GGATTTGTCGACGGTGACGGCGGCGTTGGCATCGAAATCGTACGACAAGGTTGCTGATATCTGCGATAATCTCATGCTTC AGGTACCTATCTATTTCACTTCACTTATCTCTCTCTCTTTGTTACTGCTTCTTCCTTTCCTTAGGGTTGTTTTTTGTTAT TCTCATGGCTTCGCTTAACCCTTTACTCACTCAATCACTCAGGTTGCAACAGATGGCATTGGTTACCATGACGACTGGCC CTACGCCATTCATCTTCTCTCTCACTTTTATGTGAATGACATGTATTTTCCTCTCTATTTAATTCAATTACTCATGTTTT TGGTTCTTGGGGGGTTATATTACTTGTCAAATTACACTAATTTGTTGTTTGACTGGCATATTTGTCATGAAATAATCTCT GATTTACAATTTGCAATTTGTTTAAATCAATTTTGAAGTGCTGGGGTTGGTTGTGTCCTGCGAATTTATTTAGTTTCTGT TTTTAGAGTTGTCATGTTTGTTTGATGTTGTGATATTGCTTGCAGCAATAGCGCTCGTTTTCTTTGGAAATCAATACCTT CCTCAATCAAAGAAAACAAGCCTGAAGTCACTGCTGTGTGGAGGATTGGCCAGAAGCTTTGGTTGCGTGACTATGCTGGA GTGCATGAGGCAATTCGCGGCTTTGACTGGAGCCAGGAACTCCAAGGATTTGTTGCTGCTTTCTCAGGCAAGCTTTTTTA ATATTCTTTGCCTTCCCGGTTTAGCATAGTTACATAAGTTATGATGAAATTCTTGCATGTTTGTTTTAGTTAAGGCTTGA ATCTACTCACTTTATCTTCAATTTGAAAATCTTCTTAACAATCTAACTAGATAGATATCAATTCAGTTTATTTGTTGGAC TAAAGCAGTGAAGCTGTTAACATAGATTTCTACTTGATCAAAATGTTGCCCTTACTTTCATTTATAACCTATTACACGTT ACCTTTTACATTGTTAGACTATATGTTGTTCTGAAACTAAGTTGGCCATTCTGTGTGGGTGAATCATTAACGCGTGGATG TGTTATTCATTTATTCTATATTGTTGGTTATATGCAGTTTTAGATGTACAACGTAAAGAAAGCTACATGTGGCCTTAGTA TGTTTGCTATGAATATGAATGTTACCTTTTGGCTAATTTTAGAATGAGTTTGATGAAAACAAATTGTATTGTAGTTTACA CTTGGAGGATTAGGGATTAAACACCTTTTAAGATTTGACTTCCCTTTCCCTTTAAGTTTATTGCCTTTGGATTGCTTTCC TAGATAGTTTGAGATCACAAGTATTTTGCATCTATATTTTTTCCAAAGATGTTTAGTACAGTTTTGATATTAATACTAGT AAGCTTTTTCCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTCCTCTCTGCCTATTCTACAATAAGCATTGCAGATGC TGCTTTATTTTTGGGAATGAATGAGGATGATGCTACAAGTTGTAAGTAATTTTATGTTCATCTTTGATTGAAACATTGCA TATCTATTTCTGATTTATTGTCTCTTGGTCCAGACACATGTAATTGGTTGACATTATTGAATTTTAACATTAAACAACAT GCACAAGCAATCCATGTTTTTTGTTTTATGTGGCCAGCAATTACATAAATTGCGAATACATGAATTCAGACTAATTATCT CGTGCTATATCTAAAAACAAGCATTATTTCTGCATGAATATATGAAACATATTTATCTAATCCCTAGCACCTGTCCTTTC TTGAGAACCCTCAGGCAGTTTGGGTTGAATAAACTCCTTTGAATCTTGCCCTTAAATAGTTCCTATGAAAGGCGGACTCA GATACTTTTTATGACTGTTTAGTAATAGAGGTCCAACTCTCCATCTTCTCCCTTTTGCTACTGACTGAATATTGGCTGCA TGTAACTAAAAGCCTTATCTTGTATACACTGTATGGCACGTCGATAACACTTCACGATGATATGCTTTGTTAATAGGATA GCCAATAAAAGTACCTTCTAAGGTTGACCAGGCTCCATGTTGTTATTGTAGTTTTAAAAATTTGGACAGGACTGGTTGGT TCAACCAAAAAACTGGTGAACTACATAGGTGTCTAGTCTCGTCAACCCAAAAGACTGGTTGATTATAAACCCAAAAGACC GGTTGATTATAAACCCAAAAGACTGGTTGATTATAAAATCAGTGAACCTCAATAAAGAGATAATTTAATCAGTCCATAAT TAGGGAAAACTGGATAAAATCTAGTGGTAAAAAAGCGTCTTGGACTAGCCAGATTTGTATTTTTTTAATTTAAACAAAAT ATATAAAGATTTAATGTCAAGTAACAAAGACCGATATATATGGAATCATGGATTGTTGTCATCTGTCTTCATATTGTATT TGTTTAGCTCAATTTAGCTTAATTTCTGAACATTTTGTGATAGTTCATTACATGATGTTATATAATATTAAATGAATATA TATCTAACTATCCCGATTCAATCATATTTTAACCTAACCTTAAACCAGTGTCTTATCCAGTTCAATGACCGGTTTAACTT TTTAAGCACTTGCAACCAGGGTTAAAGTTATGTAGATATAGTTAAAAGTCTTCTGTTTTAGTGTTATGCATGCTAGATAT TTATTATTATAGTTTCTCAATATAATCTGTACCTCATAACTGTTTTACATTTATATTGTTTGAGACTGCCTGTGGTGGTT TTGTTTGGGTTTAGAATTGAATAGAATTGGTATTTGGTTTTTCATACACAGCACTGGCTTAATTTGAGAATAACTTCCTT GAAAACAGACTGATTAAAGGAGAAAAGAATGGGAGTGGGAACCAAAGAGGGAGGAATGAAAAGAAGGAAAATATTAGAAC TTCCTTGTCATAATCAAATATTGCCAATTTAAACTTGATTGTGTCAATTTGGTTATCATAAGCAACGAAGCTATATATAA TGTTGCAACTTCCACTTGCGTAGTCTTGTTTTTGCTGGCTTTTGAAATATTTCCGTGAGGATTACATTATATCATAACTA TATACTGCTCCCTCTACATGTTATCATTGTTGACATTTTCGGTTGTATAATTGCAGATGTACAACAGCAAGGTTGGACTG TGGACTCTGCGTCCCGGATGCTTACGGTGAAGAAGCAACCTGTCGTGACAGAGCAGAAACTAGATCCTAGTAAATTGCAG CGATTGACAGAATATGTCTTCCATCTCGAGCATTGAAGCTTTCAATCTTGTGAAGGAATTGAACGATTTATTTTCTGAAG TCTTCCTTTTGAGTCTGATAAATCTTACTTTTTATGTTCTTCAAAGTGCATGGAAGTGTGTACATTCTGTTTCATAATTT TGGATTATGTGAAATTCGCCTAATTAGCTCATAGCCTCAGTAGTTACTGAACATGCCACTCTCTTGTAATAGTGGAACAG ATAACTTTTATATTTGCTTATTATACCTGCTTTTGAGAAATAAGTGTCTGTATATTCTGATTTGTGCTGAATATTTAGTC ATTAGAGCTAATCTTTTAATTGTAGCACAATGCCAATAATTAATATGCATTAACACTGTAGTTGGATTAGGATTCCTGCT TCCCAGTGCATTATCAATAGGAAATGG
CDS sequence (LotjaGi6g1v0357400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGTCGACGGTGACGGCGGCGTTGGCATCGAAATCGTACGACAAGGTTGCTGATATCTGCGATAATCTCATGCT TCAGGTTGCAACAGATGGCATTGGTTACCATGACGACTGGCCCTACGCCATTCATCTTCTCTCTCACTTTTATGTGAATG ACATCAATAGCGCTCGTTTTCTTTGGAAATCAATACCTTCCTCAATCAAAGAAAACAAGCCTGAAGTCACTGCTGTGTGG AGGATTGGCCAGAAGCTTTGGTTGCGTGACTATGCTGGAGTGCATGAGGCAATTCGCGGCTTTGACTGGAGCCAGGAACT CCAAGGATTTGTTGCTGCTTTCTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTCCTCTCTGCCTATTCTACAATAA GCATTGCAGATGCTGCTTTATTTTTGGGAATGAATGAGGATGATGCTACAAGTTATGTACAACAGCAAGGTTGGACTGTG GACTCTGCGTCCCGGATGCTTACGGTGAAGAAGCAACCTGTCGTGACAGAGCAGAAACTAGATCCTAGTAAATTGCAGCG ATTGACAGAATATGTCTTCCATCTCGAGCATTGA
Protein sequence (LotjaGi6g1v0357400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLSTVTAALASKSYDKVADICDNLMLQVATDGIGYHDDWPYAIHLLSHFYVNDINSARFLWKSIPSSIKENKPEVTAVW RIGQKLWLRDYAGVHEAIRGFDWSQELQGFVAAFSELYTKEMFQLLLSAYSTISIADAALFLGMNEDDATSYVQQQGWTV DSASRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 172 | 164 | 1.3E-24 | ||
| ProSiteProfiles | 20 | 190 | 171 | 13.348 | ||
| Pfam | 37 | 176 | 140 | 5.1E-37 | ||
| Gene3D | 41 | 169 | 129 | 1.2E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein deneddylation | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. | ||
| Cellular component | COP9 signalosome | A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. | ||
| Biological process | COP9 signalosome assembly | The aggregation, arrangement and bonding together of a set of components to form a COP9 signalosome. |
Expression pattern of LotjaGi6g1v0357400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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