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LotjaGi6g1v0357400.3

Overview

Field Value
Gene ID LotjaGi6g1v0357400
Transcript ID LotjaGi6g1v0357400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description COP9 signalosome complex subunit 8; TAIR: AT4G14110.1 COP9 signalosome, subunit CSN8; Swiss-Prot: sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8; TrEMBL-Plants: tr|I3SY35|I3SY35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0357400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:66910969..66914206) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATTTGTCGACGGTGACGGCGGCGTTGGCATCGAAATCGTACGACAAGGTTGCTGATATCTGCGATAATCTCATGCT TCAGGTACCTATCTATTTCACTTCACTTATCTCTCTCTCTTTGTTACTGCTTCTTCCTTTCCTTAGGGTTGTTTTTTGTT ATTCTCATGGCTTCGCTTAACCCTTTACTCACTCAATCACTCAGGTTGCAACAGATGGCATTGGTTACCATGACGACTGG CCCTACGCCATTCATCTTCTCTCTCACTTTTATGTGAATGACATGTATTTTCCTCTCTATTTAATTCAATTACTCATGTT TTTGGTTCTTGGGGGGTTATATTACTTGTCAAATTACACTAATTTGTTGTTTGACTGGCATATTTGTCATGAAATAATCT CTGATTTACAATTTGCAATTTGTTTAAATCAATTTTGAAGTGCTGGGGTTGGTTGTGTCCTGCGAATTTATTTAGTTTCT GTTTTTAGAGTTGTCATGTTTGTTTGATGTTGTGATATTGCTTGCAGCAATAGCGCTCGTTTTCTTTGGAAATCAATACC TTCCTCAATCAAAGAAAACAAGCCTGAAGTCACTGCTGTGTGGAGGATTGGCCAGAAGCTTTGGTTGCGTGACTATGCTG GAGTGCATGAGGCAATTCGCGGCTTTGACTGGAGCCAGGAACTCCAAGGATTTGTTGCTGCTTTCTCAGGCAAGCTTTTT TAATATTCTTTGCCTTCCCGGTTTAGCATAGTTACATAAGTTATGATGAAATTCTTGCATGTTTGTTTTAGTTAAGGCTT GAATCTACTCACTTTATCTTCAATTTGAAAATCTTCTTAACAATCTAACTAGATAGATATCAATTCAGTTTATTTGTTGG ACTAAAGCAGTGAAGCTGTTAACATAGATTTCTACTTGATCAAAATGTTGCCCTTACTTTCATTTATAACCTATTACACG TTACCTTTTACATTGTTAGACTATATGTTGTTCTGAAACTAAGTTGGCCATTCTGTGTGGGTGAATCATTAACGCGTGGA TGTGTTATTCATTTATTCTATATTGTTGGTTATATGCAGTTTTAGATGTACAACGTAAAGAAAGCTACATGTGGCCTTAG TATGTTTGCTATGAATATGAATGTTACCTTTTGGCTAATTTTAGAATGAGTTTGATGAAAACAAATTGTATTGTAGTTTA CACTTGGAGGATTAGGGATTAAACACCTTTTAAGATTTGACTTCCCTTTCCCTTTAAGTTTATTGCCTTTGGATTGCTTT CCTAGATAGTTTGAGATCACAAGTATTTTGCATCTATATTTTTTCCAAAGATGTTTAGTACAGTTTTGATATTAATACTA GTAAGCTTTTTCCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTCCTCTCTGCCTATTCTACAATAAGCATTGCAGAT GCTGCTTTATTTTTGGGAATGAATGAGGATGATGCTACAAGTTGTAAGTAATTTTATGTTCATCTTTGATTGAAACATTG CATATCTATTTCTGATTTATTGTCTCTTGGTCCAGACACATGTAATTGGTTGACATTATTGAATTTTAACATTAAACAAC ATGCACAAGCAATCCATGTTTTTTGTTTTATGTGGCCAGCAATTACATAAATTGCGAATACATGAATTCAGACTAATTAT CTCGTGCTATATCTAAAAACAAGCATTATTTCTGCATGAATATATGAAACATATTTATCTAATCCCTAGCACCTGTCCTT TCTTGAGAACCCTCAGGCAGTTTGGGTTGAATAAACTCCTTTGAATCTTGCCCTTAAATAGTTCCTATGAAAGGCGGACT CAGATACTTTTTATGACTGTTTAGTAATAGAGGTCCAACTCTCCATCTTCTCCCTTTTGCTACTGACTGAATATTGGCTG CATGTAACTAAAAGCCTTATCTTGTATACACTGTATGGCACGTCGATAACACTTCACGATGATATGCTTTGTTAATAGGA TAGCCAATAAAAGTACCTTCTAAGGTTGACCAGGCTCCATGTTGTTATTGTAGTTTTAAAAATTTGGACAGGACTGGTTG GTTCAACCAAAAAACTGGTGAACTACATAGGTGTCTAGTCTCGTCAACCCAAAAGACTGGTTGATTATAAACCCAAAAGA CCGGTTGATTATAAACCCAAAAGACTGGTTGATTATAAAATCAGTGAACCTCAATAAAGAGATAATTTAATCAGTCCATA ATTAGGGAAAACTGGATAAAATCTAGTGGTAAAAAAGCGTCTTGGACTAGCCAGATTTGTATTTTTTTAATTTAAACAAA ATATATAAAGATTTAATGTCAAGTAACAAAGACCGATATATATGGAATCATGGATTGTTGTCATCTGTCTTCATATTGTA TTTGTTTAGCTCAATTTAGCTTAATTTCTGAACATTTTGTGATAGTTCATTACATGATGTTATATAATATTAAATGAATA TATATCTAACTATCCCGATTCAATCATATTTTAACCTAACCTTAAACCAGTGTCTTATCCAGTTCAATGACCGGTTTAAC TTTTTAAGCACTTGCAACCAGGGTTAAAGTTATGTAGATATAGTTAAAAGTCTTCTGTTTTAGTGTTATGCATGCTAGAT ATTTATTATTATAGTTTCTCAATATAATCTGTACCTCATAACTGTTTTACATTTATATTGTTTGAGACTGCCTGTGGTGG TTTTGTTTGGGTTTAGAATTGAATAGAATTGGTATTTGGTTTTTCATACACAGCACTGGCTTAATTTGAGAATAACTTCC TTGAAAACAGACTGATTAAAGGAGAAAAGAATGGGAGTGGGAACCAAAGAGGGAGGAATGAAAAGAAGGAAAATATTAGA ACTTCCTTGTCATAATCAAATATTGCCAATTTAAACTTGATTGTGTCAATTTGGTTATCATAAGCAACGAAGCTATATAT AATGTTGCAACTTCCACTTGCGTAGTCTTGTTTTTGCTGGCTTTTGAAATATTTCCGTGAGGATTACATTATATCATAAC TATATACTGCTCCCTCTACATGTTATCATTGTTGACATTTTCGGTTGTATAATTGCAGATGTACAACAGCAAGGTTGGAC TGTGGACTCTGCGTCCCGGATGCTTACGGTGAAGAAGCAACCTGTCGTGACAGAGCAGAAACTAGATCCTAGTAAATTGC AGCGATTGACAGAATATGTCTTCCATCTCGAGCATTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0357400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTTGTCGACGGTGACGGCGGCGTTGGCATCGAAATCGTACGACAAGGTTGCTGATATCTGCGATAATCTCATGCT TCAGGTTGCAACAGATGGCATTGGTTACCATGACGACTGGCCCTACGCCATTCATCTTCTCTCTCACTTTTATGTGAATG ACATCAATAGCGCTCGTTTTCTTTGGAAATCAATACCTTCCTCAATCAAAGAAAACAAGCCTGAAGTCACTGCTGTGTGG AGGATTGGCCAGAAGCTTTGGTTGCGTGACTATGCTGGAGTGCATGAGGCAATTCGCGGCTTTGACTGGAGCCAGGAACT CCAAGGATTTGTTGCTGCTTTCTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTCCTCTCTGCCTATTCTACAATAA GCATTGCAGATGCTGCTTTATTTTTGGGAATGAATGAGGATGATGCTACAAGTTATGTACAACAGCAAGGTTGGACTGTG GACTCTGCGTCCCGGATGCTTACGGTGAAGAAGCAACCTGTCGTGACAGAGCAGAAACTAGATCCTAGTAAATTGCAGCG ATTGACAGAATATGTCTTCCATCTCGAGCATTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0357400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLSTVTAALASKSYDKVADICDNLMLQVATDGIGYHDDWPYAIHLLSHFYVNDINSARFLWKSIPSSIKENKPEVTAVW RIGQKLWLRDYAGVHEAIRGFDWSQELQGFVAAFSELYTKEMFQLLLSAYSTISIADAALFLGMNEDDATSYVQQQGWTV DSASRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13339
9 172 164 1.3E-24
IPR033205
ProSiteProfiles
PS50250
20 190 171 13.348
IPR000717
Pfam
PF10075
37 176 140 5.1E-37
IPR033464
Gene3D
G3DSA:1.25.40.990
41 169 129 1.2E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000338
Biological process Protein deneddylation The removal of a ubiquitin-like protein of the NEDD8 type from a protein.
Subterm of
GO:0008180
Cellular component COP9 signalosome A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
Subterm of
GO:0010387
Biological process COP9 signalosome assembly The aggregation, arrangement and bonding together of a set of components to form a COP9 signalosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0357400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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