Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0358200 |
| Transcript ID | LotjaGi6g1v0358200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 87A; TAIR: AT2G01070.1 Lung seven transmembrane receptor family protein; Swiss-Prot: sp|Q8BKU8|TM87B_MOUSE Transmembrane protein 87B; TrEMBL-Plants: tr|A0A151T806|A0A151T806_CAJCA Transmembrane protein 87B; Found in the gene: LotjaGi6g1v0358200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67021612..67026539) extracted from Lotus japonicus Gifu genome v1.2.
CCGCGCGTGAAGGCAAAGATATGATATGATACCTACCGAGCCAACATGTCCCTTTTCTCACTCACTCAATCCCTTCCTTC TTTCTCTCTTTCTTTTGCTCCGCTTAGTTTCCGTTGATCCGATCCAATCTTCTCTCAGTCTGTATCGGCATAGATTCAGC ATTCCATTGTTAGATCCATGTTGTTCGCACCACCACCACCACCTTCTTCTTCCTCTTCTTCTTCATTACACCTGTTGATA CTTCTACTATTTTCTTCCTTGCTTTTCACCACCACCACCTTCGCATCCATCCACACCTACAACCATGAATCCTTCAAAGA TGTCGGCAATGCTTACCTCCTCTCCGGCGGCAGTGAAGGCATCCTCGCCGCCCCCTCCCACCAGGCCCCTTCTTACATCC GGTATGTACTACTACTACTCTCTCTCTCGATCGATTTAACTGAACTAAGTAATGATTCAAGGTTGATTCTTACCCATTAT TCCATTTGCTGCTATGAGGCCAAAGTTAGAAACTTTGATCCATCATTTCTCAATGTTGCTTGCTTTCAAGATGATATAAT ATATGGGCTGCCATTTTTTTTATCAGTTTTCATTCCTCAAAATAAAGCTGCAATTTTTATGACAGATATGGAAACCCAGC ATTGTAATTGAACAATGGAAAATCCTTGTGTCTTTAGTATTCTTTCAAATGTTAGGATTGGAATTGCTTATGGATTTTAC CATTTCCTCATGTTTGAGTTAAACAGAAGAGCAAATACTAACTTTTTTTTTATTTATTTTGCTTTTGGGGGATAGGTTTG AGAATATCACCTTTAGGAGAAGAAAAAGTGTGGCCAAGGGTACTGTGCCGATACACGTTATAATTTTTGAGGCTGCTGAT CGGGATGATATAGGTGGTTCTGTTTATGGTGGACAGAGGGCAATCTGTTGCACCCCTGATTTAGCTAAGATGGGGGCTTG TAAGCGAGGGGAGATTATCAAGAGAGCTTCTGCAACAGATATTAATTGGCCGGTTGTTTTAGATATACAATTCAAGGGGA AATACAGAACCGCGAGCATAGATTCTAGGGAAGTTCCCATCACGAAGACTGGAATGTATAATTTGTTTTTTGTCGCTTGT GACCCCAAGCTCAAGGATATGGTGATGACTGGGAAGACTATCTGGAAAAACCCTGATGGGTACTTGCCTGGTAGGATGGC CCCGTTGAAGAAGTTCTATGTGTTTATGGCACTGGCTTATGTCGTCCTTGGCATCATTTGGTTACTTCAGTATGTGAGGT TTTGGAATGATGTGCTGCTACTTCAGCACTGTATCGCAGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTCTGGTAT TTTGAGTATGCCAATTTCAACAGTACTGGAACGAGACCTGTTGTTCTCACAACATGGGTTGTCACTGTTGGGGCTATAAG GAAAACGATTTCGCGACTTCTCATTCTTTCTGTCTCAATGGGATATGGTGTTGTGCGGCCCACTCTCGGTGGTCTTACTT CAAAGGTTCTTTTACTTGGAATAACTTACTTTCTAGCATCAGAGTTGCTGAACATTACTGAATACGTGGGGACTATCAAT GATGTATCAGGAAGGGCAAGGCTCATTCTAGTTCTTCCAAATTCTTTCTTGGATGCATTTTTGATATTATGGATTTTTAC ATCTCTTTCCAAAACACTGGAGCAGTTGCAGGTATTCTTCATTCCATAAAGTTGCTATTATTTTACAATGCCCTACCTCC AAAGTTCTGTTTTGAATTTCATATCATTTTTTTCAATATGTTTACCTTTTTGTTTTTGGATCTCCCTTGTCAGGCAAAAC GGAGTTCTGTTAAGTTGGATATTTATAGGAAATTTTCAAATGCACTAGCAGTAGCAGTTATCTCCTCAGTTGTTTGGATT GGATATGAGGTGAGGCTTATAATCCATTTACTTTATTTTATCTTGTACAAAATAACATGGACTTCTTGCAATTAATAACT GTGATGTTTGTTTTATCCCCCCACAAATAACTAATATTCCTGTTGCACTGTTTTTATAGTGCATTGTTGCAGAAGAAGAA ATGAGAACGTGTAAATACTGTCATGCACTTTGATTTATTAGCCCTTTTCAAGCTTTCTTTATTTTCTATTCCTTTCCTTT ACATTTAGGTCCTATTCCTTTATATTTTTTATTTCACAATCAAGTACTGGACCGGAAAAAACACAATGGTGTGGTTCATC TGGGGCAGAGAGAAATGAGGGAGAATAGCTCACATCAAGGAGCCAAATTACCCCAAAACACCCTCACTTGTCACTGTATG AAGTGTATGTCCTAGCTTAGAGCTCTTAAGCCTCTCAAATAAGCATATCTTTTGCCTTAGCTCTCCCCATGTTTGGTAAT TGCCAACTTCTACAGACATGGAATGGTCGTGTGTTTCATTGTGCATCGATTCTGATAGGTACAATAGAATCAAATCTCTC TTTCAAATTCATTTCCACTGGTTGTAAGTTTTTTGGACGGAGGCAGCTTGTCATTTCTCTGAAAAAATTAGAGACTGGCT ATTCATCCACCCTCTATTCATCCCACATCAGCTAGAGATGGGAGCATCTACCAAACATCATTAAGGTGTTTGGGCTGGCA ACCTAGTATGCCTCAACTCAGCATCGAGGTGAATGCCTCAAATGCTTTAGACAACATTAATCCCTATATACACATGCCTA ATTGCATCATTTTTCTTGATGACCATAGTCCACATCGCACCTATGTATTTGGAGCTTGTGAGAGAACAATAGGTTTTCAC GTCTTGTGTCCTGTCAGTTTTAGCATTTTGATAGATATGTTTTTAAGCTTATCTGTACTCTTTTTGCCTGCATTGTATGG CCCCTAGCATTTGATTATATTATAAGAGATCTTAACTTATAAAGTAGCATCTGTTATGATAAGAACCCAGAAATTCAAGG AAAATATTATATTGACTGAACTTGGTACCCTCTACAATTGGTGAGAAACCAGTGATTAAGGATACAGAAACTAGAGAAGG AATGAAGATACCCTGGTTGATTCGAGAGAACCAGGAACTCTCCCACAAATACCCAACAAATCAATCCATACCCCTTTTTC CCCAATTTCCCCTATATATGCATACTACCAGGAAGCTTATGAATACTTCCTTCATTAGTTACAAGTAAAATATATTATAT TCTATTATTTACTCTTTTATCCCTGTAGCCTTCTTATTTCTCCTACGGTAGACCTGTGTCACACGGGGTTTGATCCTATC ATGTTATCATCTATTACTTTTTCTTTGGGTATATTACCGACCTCTCACCTAATTGAATACAGCTTGTTATTGTTGTTTGT CACCGAAACTTCAAGAAAACCAATTCTTAACAGAAAAGAGGCAGTTCAAATATCGTTGTCAAGGGAATCAAAAACTAAAT ATGCTTCAGTGAATGACTTCATGGGATTCTTCACTTTAAAAGCAGACACATTAAAAGTAAAATTGATTAAATGGTGTATG AGTTTGGTGATGACTTAATGGGATTCTTCACTTTATAAAAAATTACACTTGAAAGGAATATTATAGGGTGTTTCTATCCC TTGTGTTAACTGCGTTTGGCTTATTTGAATTTTCTTATATCAATTTAGCAATAAATTGCTGAATGTCGTTTCCTTATGGA AATCTACTGTCATATAGCATTCATTTTTCAAAAAAAAAAATCTGTGTTGCTATCAGGTATACTTCAAAGCTACAGATCCT TTCAATGAGCGCTGGCAGAGTGCTTGGATCATCACTGCTTTCTGGGACATTCTAGCATTTGCACTCCTCTGTGTTATATG TTATCTCTGGGCACCTTCCCAAAGCTCTCAAAGGTGAATTGTCTTGGTCAAGTCCTTAACATGACTTTTCCTTCCCAACA TTTATCATGGGTTATATTTGTATTTTGAATTGATTCATTAGATAAATATCATCAGTAAGCAGCTGCTAGCTTTTGAAATT TTTGACTCCTCTAATGAGATTGCCTTGTCTATAGAAATCACCTTTATTGTAAAGCATAATTGCATCCTACTTTGCAAATT TTCCAGTTTGTTCTCTGGGGTTGGAGGGTTTAGGCACATTATGATTTGCATTATATGGCATGTGTCTGGTTACCAGTTGA ACTTTATGCTTTCTTCATGTGTTAATGCTAATGTTGCTGTAATATTATAATGCTAGTTGTATTAGTGAAACAGTGAAAAA AAAAGGCATGTCATTTCATGTTGTAATTTCTGATTCAAATGGCTTAGGGAAGAGTCTCGCTTGTGTTTGATTTGCCTCTG GAAATGTATAGGTATGCGTATTCAGAGGAAGTAGGAGAAGAATCTGACGATGAAGAAGGTCAGGCTCTAACTAAGCGAAA GCAGGAAGGTCAGGGTGAACTGAGCTTAGTGAGGCAAGAGAAGAATGGCGGAACTGATGCATCTTTTGATGAAGACGATG AATCAGAAGAGGATAAAAGGGAATGAGCTCTTAACAGCTTTCTTGTGCTTATTTCCCACCTGGGATTGTAAGTCTCAGAC CAACCCTCAACAAGAGGTGTTGTAAAATTTTGTTCATTTGTGTCTGTAATAGCAGCTTCATATTCTTTGTTTTAGATATC AGTTGCTTCAATTAACATGAATGTAATTAATGTATACCAAATGAAATATTGCACATGCAGATGATCAAAATTGGTGTGTC CTTTCCCTCGCACTTTTAGACATAATAATCTTGGGTTTGGTTTGGTTGGGGTGGTTGCGAGTTACCAATTTCTTATAAAA TGCAAAATTAACACAAATATTAGTACGAAATTGAAATGGTTCAACTATATAAATCATTTATCCAATTTTTTAAACTAGAA AAAATATTCTTTTGAAGGAAAATTGTATATAATCCACATTGAACTTTG
CDS sequence (LotjaGi6g1v0358200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTCGCACCACCACCACCACCTTCTTCTTCCTCTTCTTCTTCATTACACCTGTTGATACTTCTACTATTTTCTTC CTTGCTTTTCACCACCACCACCTTCGCATCCATCCACACCTACAACCATGAATCCTTCAAAGATGTCGGCAATGCTTACC TCCTCTCCGGCGGCAGTGAAGGCATCCTCGCCGCCCCCTCCCACCAGGCCCCTTCTTACATCCGGTTTGAGAATATCACC TTTAGGAGAAGAAAAAGTGTGGCCAAGGGTACTGTGCCGATACACGTTATAATTTTTGAGGCTGCTGATCGGGATGATAT AGGTGGTTCTGTTTATGGTGGACAGAGGGCAATCTGTTGCACCCCTGATTTAGCTAAGATGGGGGCTTGTAAGCGAGGGG AGATTATCAAGAGAGCTTCTGCAACAGATATTAATTGGCCGGTTGTTTTAGATATACAATTCAAGGGGAAATACAGAACC GCGAGCATAGATTCTAGGGAAGTTCCCATCACGAAGACTGGAATGTATAATTTGTTTTTTGTCGCTTGTGACCCCAAGCT CAAGGATATGGTGATGACTGGGAAGACTATCTGGAAAAACCCTGATGGGTACTTGCCTGGTAGGATGGCCCCGTTGAAGA AGTTCTATGTGTTTATGGCACTGGCTTATGTCGTCCTTGGCATCATTTGGTTACTTCAGTATGTGAGGTTTTGGAATGAT GTGCTGCTACTTCAGCACTGTATCGCAGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTCTGGTATTTTGAGTATGC CAATTTCAACAGTACTGGAACGAGACCTGTTGTTCTCACAACATGGGTTGTCACTGTTGGGGCTATAAGGAAAACGATTT CGCGACTTCTCATTCTTTCTGTCTCAATGGGATATGGTGTTGTGCGGCCCACTCTCGGTGGTCTTACTTCAAAGGTTCTT TTACTTGGAATAACTTACTTTCTAGCATCAGAGTTGCTGAACATTACTGAATACGTGGGGACTATCAATGATGTATCAGG AAGGGCAAGGCTCATTCTAGTTCTTCCAAATTCTTTCTTGGATGCATTTTTGATATTATGGATTTTTACATCTCTTTCCA AAACACTGGAGCAGTTGCAGGCAAAACGGAGTTCTGTTAAGTTGGATATTTATAGGAAATTTTCAAATGCACTAGCAGTA GCAGTTATCTCCTCAGTTGTTTGGATTGGATATGAGGTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAG TGCTTGGATCATCACTGCTTTCTGGGACATTCTAGCATTTGCACTCCTCTGTGTTATATGTTATCTCTGGGCACCTTCCC AAAGCTCTCAAAGGTATGCGTATTCAGAGGAAGTAGGAGAAGAATCTGACGATGAAGAAGGTCAGGCTCTAACTAAGCGA AAGCAGGAAGGTCAGGGTGAACTGAGCTTAGTGAGGCAAGAGAAGAATGGCGGAACTGATGCATCTTTTGATGAAGACGA TGAATCAGAAGAGGATAAAAGGGAATGA
Protein sequence (LotjaGi6g1v0358200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFAPPPPPSSSSSSSLHLLILLLFSSLLFTTTTFASIHTYNHESFKDVGNAYLLSGGSEGILAAPSHQAPSYIRFENIT FRRRKSVAKGTVPIHVIIFEAADRDDIGGSVYGGQRAICCTPDLAKMGACKRGEIIKRASATDINWPVVLDIQFKGKYRT ASIDSREVPITKTGMYNLFFVACDPKLKDMVMTGKTIWKNPDGYLPGRMAPLKKFYVFMALAYVVLGIIWLLQYVRFWND VLLLQHCIAAVIALGLFEMILWYFEYANFNSTGTRPVVLTTWVVTVGAIRKTISRLLILSVSMGYGVVRPTLGGLTSKVL LLGITYFLASELLNITEYVGTINDVSGRARLILVLPNSFLDAFLILWIFTSLSKTLEQLQAKRSSVKLDIYRKFSNALAV AVISSVVWIGYEVYFKATDPFNERWQSAWIITAFWDILAFALLCVICYLWAPSQSSQRYAYSEEVGEESDDEEGQALTKR KQEGQGELSLVRQEKNGGTDASFDEDDESEEDKRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 36 | 36 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| PANTHER | 27 | 515 | 489 | 1.9E-213 | – | |
| PANTHER | 27 | 515 | 489 | 1.9E-213 | ||
| Phobius | 31 | 36 | 6 | - | – | |
| Phobius | 37 | 214 | 178 | - | – | |
| Pfam | 170 | 457 | 288 | 1.1E-100 | ||
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 215 | 235 | 21 | - | – | |
| Phobius | 236 | 241 | 6 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 275 | 11 | - | – | |
| Phobius | 276 | 298 | 23 | - | – | |
| Phobius | 299 | 309 | 11 | - | – | |
| Phobius | 310 | 329 | 20 | - | – | |
| TMHMM | 319 | 341 | 23 | - | – | |
| Phobius | 330 | 348 | 19 | - | – | |
| Phobius | 349 | 369 | 21 | - | – | |
| TMHMM | 351 | 373 | 23 | - | – | |
| Phobius | 370 | 389 | 20 | - | – | |
| Phobius | 390 | 409 | 20 | - | – | |
| TMHMM | 394 | 413 | 20 | - | – | |
| Phobius | 410 | 428 | 19 | - | – | |
| TMHMM | 428 | 450 | 23 | - | – | |
| Phobius | 429 | 451 | 23 | - | – | |
| Phobius | 452 | 515 | 64 | - | – | |
| MobiDBLite | 461 | 515 | 55 | - | – | |
| MobiDBLite | 472 | 488 | 17 | - | – | |
| MobiDBLite | 501 | 515 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0358200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…