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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0359600 |
| Transcript ID | LotjaGi6g1v0359600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G57620.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4; TrEMBL-Plants: tr|I3S1Y6|I3S1Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0359600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67115125..67117182) extracted from Lotus japonicus Gifu genome v1.2.
TATACATCAATAAATTGATTATTATATTTCAATTATATAGGAAATTCAAAATTTTAATTTAATCTAAAGTTTTGTACTTG CTCAGGATTTCTTCACTTTTTCATTCCTCGGTGAAGTCAAATTTTGTCTGACTGTGTGTGTACAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGGGCTATGATGTCTGATTCTCATATGTTGGTGTCACTTCTCTTCTTCCTCGGTTTCTTCTCAACTT GTCACGCTGTCTGGTTCGTCTTACCCCCCTCCGGTACCAAGTGCGTCTCCGAACAAATCCAGAGCAACGTCGTCGTTTTG GCACATTACGTTGCCATTGGCCCTGACTATAATATAACCCTCAACCCCACCGTTTCTGTCAAGGTACCATTCTTTGATCT CATACCATTACCCTTTTCCGATTGTACGTTCATCATCATCCATTAGAAATGGAGTTGGTAATTGACGATTCCAGAGAGGG ACTGCTTTTGCATGCAAAATTGATGATTAGCCCTTTTGTGTTAAATAATTAGCTGATCCCTTTCAAAGTATATGATCCAT GTAACTAATTGTCTGGACTATGTTAACCAACCTGAATGCATGCTTTTATCTTGCTCATGGTGTTGTAATGTTGTAAATGT TGGTTTTTTGTAGATTTTCACCTAATGCAATTTGCTTCGGTGCTGGAATGTGGGTTGAATAATTGTGTTCTTCCAAAAAA TCATCATCAAACCTAACAATAATAGTTTCAATCATGTCTGAACCTATTCTTGTGTCATCAAGATTCAACTTGAACTGGGG CTTGAGCTACACAACCTTGAGACATTAGATTGTTAATTGGGTGTTTGGGTCTATTGATTGTAAGTTGCTCTGTGTGATGT TTTCAGTTTTCTGTTTTGGTTAGGTGACATCACCATATGGAAAAGATCTTCATCATTCGGAGAATGCAACATACGGTGAT TTCGCTTTTACAACTCAAGAGGCTGGGAGCTACCTAGCATGCTTCTCGTTGGAGAATAATCAAGGGACTGGAGATGTTAG CTTGCACCTTGATTGGAAAATTGGAATTGCAGCAAAGGATTGGGATGAAGTTGCTAAGAAAGAGAAGATTGAGGTAAACA TGTCAATGATACCTATAACCTATTCATATGCCTGTGAATATCATGTAGAACTTCTGAGTTCTGTCTCTCAAGGGATGACA TTTACGCAAAGTCCTATCAAAGAATGAGTCTAAGTTCTGTATCCACACGGTTGTAAGACTTTCAAGTTTTGTAGTTTTAT ACATTGCTTGAATTATTTTTGGTTCTTTGCACAATGAGCACGAAAATCACCCTGTATTGATTGCGAGCTATTTGAACTAA ACTCTACCTCTATTCTCTATGATTTCATTATGCTACTTTTCGCTGACATTAGTCTCCAAACATGATTGATGCTCAGGGAG TAGAACTTGAGTTGAGAAAGCTAGAAGGATCAGTGACGGCTATCCTCGAGAATTTGAAATATCTGAAGGGCAGGTAATTT GCATCATTTCAAGACTTCTCCCTAAGAATTTTGATTGCAAATGGTTTTAGTTCTTCTGATATATCACTCTGTTTTGTATA TTTGCTCAGGGAAGCGGAGATGAGGAGCGTGAGTGAAAAAACAAATACCAGAGTGGCAACGTTTAGTATAATGTCCTTGG GTATTTGCATTGTAGTTTCAGCTTTGCAGCTGTGGCGTTTGAAGCGATATTTCCAGAAGAAGAAGCTTATTTAGATGGTG CAAGTGTTAATTTAAGATTAAGGAAGGAATTTTAAACTTTTGGCATTTTTATGAGCTATACTTCTTACAGCAACCGGAAT TTTTTTCTAAGTACACTTACAGCGTCTCCAACTTTTTCTTATTAGTAGAATTTAGTTATAATGCCTGACCACCGTCTCTT GTTAGGGAAACAATCAAACAACTGAACTGGGTTATATGATCAATGCTCATAAGACAGATTGTTAAATGTATGGTTGGCTA AGCCTCAAACATTTACTTGGGACGGGTGTTCATGAGGTGCATGACAATGAGTTTCGCC
CDS sequence (LotjaGi6g1v0359600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCTGATTCTCATATGTTGGTGTCACTTCTCTTCTTCCTCGGTTTCTTCTCAACTTGTCACGCTGTCTGGTTCGT CTTACCCCCCTCCGGTACCAAGTGCGTCTCCGAACAAATCCAGAGCAACGTCGTCGTTTTGGCACATTACGTTGCCATTG GCCCTGACTATAATATAACCCTCAACCCCACCGTTTCTGTCAAGGTGACATCACCATATGGAAAAGATCTTCATCATTCG GAGAATGCAACATACGGTGATTTCGCTTTTACAACTCAAGAGGCTGGGAGCTACCTAGCATGCTTCTCGTTGGAGAATAA TCAAGGGACTGGAGATGTTAGCTTGCACCTTGATTGGAAAATTGGAATTGCAGCAAAGGATTGGGATGAAGTTGCTAAGA AAGAGAAGATTGAGGGAGTAGAACTTGAGTTGAGAAAGCTAGAAGGATCAGTGACGGCTATCCTCGAGAATTTGAAATAT CTGAAGGGCAGGGAAGCGGAGATGAGGAGCGTGAGTGAAAAAACAAATACCAGAGTGGCAACGTTTAGTATAATGTCCTT GGGTATTTGCATTGTAGTTTCAGCTTTGCAGCTGTGGCGTTTGAAGCGATATTTCCAGAAGAAGAAGCTTATTTAG
Protein sequence (LotjaGi6g1v0359600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSDSHMLVSLLFFLGFFSTCHAVWFVLPPSGTKCVSEQIQSNVVVLAHYVAIGPDYNITLNPTVSVKVTSPYGKDLHHS ENATYGDFAFTTQEAGSYLACFSLENNQGTGDVSLHLDWKIGIAAKDWDEVAKKEKIEGVELELRKLEGSVTAILENLKY LKGREAEMRSVSEKTNTRVATFSIMSLGICIVVSALQLWRLKRYFQKKKLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 5 | 211 | 207 | 6.9E-98 | – | |
| PANTHER | 5 | 211 | 207 | 6.9E-98 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| SMART | 23 | 206 | 184 | 1.7E-59 | ||
| Pfam | 24 | 206 | 183 | 1.3E-46 | ||
| Phobius | 24 | 178 | 155 | - | – | |
| ProSiteProfiles | 33 | 146 | 114 | 12.806 | ||
| Phobius | 179 | 199 | 21 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 200 | 211 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0359600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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