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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0360200 |
| Transcript ID | LotjaGi6g1v0360200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G10910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910, chloroplastic; TrEMBL-Plants: tr|A0A0L9VGM8|A0A0L9VGM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0360200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67159040..67163808) extracted from Lotus japonicus Gifu genome v1.2.
CACCACCATACACACTAACACACACACTAGCTTGTTAGAAGAAACCAATGGAGTTATCTTCAGTTGCTGCAGCAATGGCG TTTCGCCATTCACCGATTCCTTCGCTCTCAGTTTCAATTTGCTCTTGCTCTTCTGCATCATCGTCGTCGTCAACAGCTGA GAAAAAAACCCTCAAACTTGGAAACTCCAAACCCTTCTCCTCCGCAAGAAAATCTGCCACACTTGAACTTCAACGTGCTT CCGATTTAGCCTCCGCTCTCGCAAGGTCAACTTCATTTCTTCATCTTCCTCCAACGTTCTCCACTATGCTAACAGCTATA ACTGCAATTTCAATTCTTATCAGGGTAGGAGACGTTTTGACAGTTAAGGATCTCAATGCCGCTTTGCACTGCTTCGGCAA TTCCAACGATTTCAACCATATCTCTCAGGTTCTAGCTTCTACTTGCTTGTACTTGTAGTGAATCAATCATATTTCGGGAA ACATTTACATAACTTGCTCATTGCTTTTGATTATTGCATTTGCAGCTGTTTATATGGATGCAAGAGAATAATAAGCTTGA CGTGTCGTCTTATTCGCATTATGTAAGGTTCATGGCGAATAAACTTGATGCTGCTGCCATGCTGAAACTGTATGACAGCA TTCAAGTTGAATCAGCCAAGGACAATGTCTATGTATGTAATTCTGTTCTCAGATGTATAACCAGGAAAGGCAAGTTCGAT GCTGCCATGAAACTCTTTCAGCAGATGAAGGAAGATGGTCTTGTCCCGGATGTTGTTACTTATAGCACGGTACTGTCATT CGAAACCTTGAGAGACTTTCATTTTATCTGTTAACATGAATATTTTGTTAGATAGTTTATCTAAGTGCATAGACATGGAT GGATTAATATACAAACTACAAAGTTCCTATCTTGTTGAATAGTGTTAAAAAAAAAACAGAGAGAGAGAGTTCAGTATGTA GTGTGAAGTGTTTAAATTCTGTCTGACATTAATTCAACATGCTTGAAGCAATTCCTTTGAAAAAAAGGCCACCATCCATC AATCAACTAATCTTCAACATTCTCTGCTTGATTTTCCATCTAAAACATTGACTTCTTATGTATACACAACAAAATATACA TGGCTCTAACTTGAGTATTTAATTATTTCTTGCTGCCTAATTTTGGTTGTTCTGATCCTTAGCTTCTTGCAGGTTGCACT AAAGTAAAAGATGGATATCCTAAGGCACTAGAGCTGATTCAAGAATTGAAATTAAATAAACTGAGGATGGATAATGTAAT TTATGGGGGAATTCTGGCAGTGTGTGCTTCTAATAGTAAATGGGAAGAAGCAGAACACTATTTTAACCAGATGAAGGATG AAGGTCATTCACCAAATGTTTATCACTATAGCTCTTTGCTCAATGCTTATTCAGCATGTGGAGACAACGAAAAAGCTGAT ATGTTGATTCAAAATATGAAATCTGAAGGGTTAGTACCAAACAAGGTTTGTTTTCCTTATTACTTGCTATTTGTAAGATT ACAATTTGTGATAAGTAGTATATCATTCATTTGGCTACACGTCATAGGATGCTAATTGGTTGTTCTGTTTACAAACCTTA GAATTCATGGAATAGCTATTTAATCATGTTTAGCAGTTTCTATGACGTATGTGCTCTAATATAGGTTGGAAACTTCAAAT GTTTTTTATACTAAGCGGTCAAGAGTTGGATCCTTGTTGCCCCCATCTAATAAAAAAAGTTGAGTTTCAGCACAAGGTAG ATGGGTCTGTGCGTTGTCCACGCTTCAAGCTCAATCGGCTCTTGAATGAGAGGGTGTGTTAGATATAATAAAAAACAATT CACGTGTCATTTACCCAACAACTTAAGCTCTTGGAATAGTTGGTTCATAACAGTATATATATTTGATAATTAATGGTTCT AAGGTGCATATTTATCACATGTTCATAATCCCTTGGGGTCTCACACCAGGTTGATGTATCTCCTCCTTGTTTTTCAAATT GAAATGCATAATCTTTTATATTTTTGTTATATTTTGATTTTTAATATCTGATTGAAGAGCAATCCTTCACTGAATTTAAC TTGAGCTACTAAAAAAATTGCAGGTCATTTTGACAACCTTACTGAAGGTATATGTTAAAGGAGGCTTGTTTGAGAAGTCA AGAGAATTGTTAGCTGAGTTGGAATCTTTGGGCTATGCTGAAGATGAGGTAATAGTAACCTTTGAAATCAACAAGGGTTG TTAGTTTTTTATTTGTATTAAAACATTATTAAATAAATTGATGTTCACATGGTAGCATTATGCATACACTATTGATACCT TAAAATTTATTTCCTAGCATAACTTGTATATATCCTTCTTTTAACTTTTTTTGTTTTTCCTTGTCTTCTCCTTTTGATTA TCTAATTTGACTACTTTGAGTTTATGTGCAGATGCCTTACTGTGTATTGATGGATGGCCTAGCTAGGGCCGGACATATGG ATGAAGCCAAAATAGTTTTTGATGAAATGATGAAGAAACAGGTCAGGTCTGGTAAGTTTTATTTGAGTTTGCTTCAATGA AATAATACATTGAGCCTCTATAAATCTATATGATTATTTAGCCTAGTCGACCGGTTTTCAGTGACCAAAAATGCTGTACA GCACCAATTAATATATATATATATATATATATATATAGGGAGCATATCAGGTGAGAGGAGTGGTTTATGGTGAGAGGTGA GAGCACTCAATAATAACCCTTAGATGGTTTTGAATGGTTAGGATTTAATCTATTTAAATGCACTCCACGTGACACCCAAA ACCCCAATTTATAATTCTCACGCGCATCTTCCTCTGTGTTGTATCTTTCTTTCTCACGCACCTGATGCTGTCTTTCTCCA TTCCGCCATTGATGCTGCTCTCTTCCCTATTTCAAACACAAGTACATGACCCATCACTGAAAGGTGCCAAATTAAAAGAT CTCATCCTTCACTGGCAAACTTAGGGATTTCTCATCAAAATCCCCAATTTCTCTTCTCATCTATAAATCCCGTTGCCACA TGGATTAATTCAATTTTGAGAAAAACAATTCAACTAAGAAGCAATTGCTAGTCAATGTAGCAAAATCGACAACTGTCTGT ATGTGGTAAAATGGGGCTAGATGGCTTTGTTGATTGATTGGGATGGCGCAATAATTAGGAATCTTTCATTTCTAAGCATG AAGGCATCATGATTTTGAGGAAATTGTTCAATGGCATAGGGGAGGAGAGAACGAAGGCAAGGACAGATGGGTGGCCATAA ACAGGTTAACGCCGAGAGAAAGGAACCAGAGGAAGAAGATGCGCGTGGGATTAAAAACTGGGGTTTGGAGTATCACGTGG GAATATACTAAATGAGATTAAATCCTGACCATTTAAAATTATCTAATGGCTATTATTAATTGTTCTCATCTCTCACCATA AACCACTCCTCTCACCTGATATGCTCCCTATATATATATATATATTGGTTTTGAGTACATGGTTCATGTTTTTCATTGTA ATGTGATGAACACAAAAAATACAATTCCTTTTCCTTTGAGCATTTATTGGTGGTCTTGTCTTATTTTATGAAATTTATTT GCTTCTTTTAGAGTTCTAATTCCACACTTTGGTCTTCATGTACCAACTAAACATTTAGTAAAATTGATCCTTGACATGGT TTCAGAGCCTTTATGACCAATTGATTAGGATTTCAGTTCTTACCGACCAATATTTTTCATAACCAATTTGAATTTCACAC GATAAAATGGGTATGTGTGTTGTCCATACTCAGAACCAGAGGTTCTTGTGTGAGGGGACTGGTTAGATGTTAGAGAGTAG AGGCATAAAACCACTCTTGGGCCTTCATTTATCAGCCTAAGCTTTTAGAAGAGTTATCTTTAACAGCTTCATGTGCAGTG GAGGTCAAAAATAACTTTTGCAAATATGTTCGCATATTATCCTTCTAGTTTCGAAATTTGTTCCGTTGTTTGAAGTTCTG CAGGAACCTCTGTTCTTTGGAGCTGATAATAGATAGATATCCATAAATTTTTTTTTTCTTTATCATACTAAGCTCTGGTT CTAGCAACTCTCCTAGCTTGACGTCATTCACGTTGTAGTAATTTACTGTTTAATTCCCACTTGTAGATGGCTATGCTCAC AGCATCATGATATCAGCACTTTGCCGAGCCAAGCTTTTTCGAGAGGCAAAACAGTTGGCCAAGGATTTTGGAACTACCTT AAACAAATATGATTTAGTTATATTAAATTCAATGCTCTGTGCTTTCTGCAGAGCAGGTGAAATGGAAAGTGTGATGGAAA CTCTAAGAAAGATGGATGAATTGGCAATCAGTCCTGATTACAATACCTTCCATATTCTAATCAAATATTTTTGTAGGGAA AAAATGTATCTATTAGCTTATCGAACCATGGAGGACATGCATAGTAAAGGCTATCAACCAGTGGAGGTATATTGCTTTAT CAATGTCCTCATACTAGTATTAAGTCTCTTGTTTGATTGAACTTGTCTTCTTCGGTATGAGACTGTAGTCCAGTTTGCCC TTTTAATTTTATTATTTGTAACATACACCCACATCTTTGTGCATCCATCTCATGCATTTCCCATTTCATAGCATATAACC TTGTGTATGTTTCTACTTTCTGGGTGAGTGTGTATTCTGTTGCATGTTATTTGAGTTTGATGGTTTTTCTCCTTTCTATT TTCCTTACCTTCACATAGATATTTATTGGAAAATAATAGGTAAATGCTG
CDS sequence (LotjaGi6g1v0360200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTACTGTGTATTGATGGATGGCCTAGCTAGGGCCGGACATATGGATGAAGCCAAAATAGTTTTTGATGAAATGAT GAAGAAACAGGTCAGGTCTGATGGCTATGCTCACAGCATCATGATATCAGCACTTTGCCGAGCCAAGCTTTTTCGAGAGG CAAAACAGTTGGCCAAGGATTTTGGAACTACCTTAAACAAATATGATTTAGTTATATTAAATTCAATGCTCTGTGCTTTC TGCAGAGCAGGTGAAATGGAAAGTGTGATGGAAACTCTAAGAAAGATGGATGAATTGGCAATCAGTCCTGATTACAATAC CTTCCATATTCTAATCAAATATTTTTGTAGGGAAAAAATGTATCTATTAGCTTATCGAACCATGGAGGACATGCATAGTA AAGGCTATCAACCAGTGGAGGTATATTGCTTTATCAATGTCCTCATACTAGTATTAAGTCTCTTGTTTGATTGA
Protein sequence (LotjaGi6g1v0360200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPYCVLMDGLARAGHMDEAKIVFDEMMKKQVRSDGYAHSIMISALCRAKLFREAKQLAKDFGTTLNKYDLVILNSMLCAF CRAGEMESVMETLRKMDELAISPDYNTFHILIKYFCREKMYLLAYRTMEDMHSKGYQPVEVYCFINVLILVLSLLFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 33 | 33 | 10.194 | ||
| Phobius | 1 | 138 | 138 | - | – | |
| Gene3D | 2 | 64 | 63 | 1.5E-12 | ||
| TIGRFAM | 3 | 30 | 28 | 3.6E-6 | ||
| Pfam | 3 | 47 | 45 | 2.3E-11 | ||
| PANTHER | 3 | 59 | 57 | 5.1E-21 | – | |
| ProSiteProfiles | 34 | 64 | 31 | 6.796 | ||
| TIGRFAM | 37 | 57 | 21 | 0.0016 | ||
| Gene3D | 65 | 153 | 89 | 1.4E-14 | ||
| Pfam | 69 | 117 | 49 | 1.9E-9 | ||
| PANTHER | 69 | 142 | 74 | 5.1E-21 | – | |
| ProSiteProfiles | 69 | 103 | 35 | 10.786 | ||
| TIGRFAM | 72 | 104 | 33 | 6.3E-6 | ||
| ProSiteProfiles | 104 | 138 | 35 | 9.887 | ||
| TIGRFAM | 107 | 138 | 32 | 1.7E-5 | ||
| Phobius | 139 | 156 | 18 | - | – | |
| Phobius | 157 | 157 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0360200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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