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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0364000 |
| Transcript ID | LotjaGi6g1v0364000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bromodomain; TAIR: AT1G58025.3 DNA-binding bromodomain-containing protein; Swiss-Prot: sp|Q6DFF2|BRD4B_XENLA Bromodomain-containing protein 4B; TrEMBL-Plants: tr|A0A151T839|A0A151T839_CAJCA Bromodomain-containing protein 4; Found in the gene: LotjaGi6g1v0364000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67550355..67558035) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCTTTTAAAAAGGAAACGGAAGCGAAACACAGGAAGAGTGTACGTATTAGTTGCTATTTTATGACTTGTTTGATTTG CTAAAAAATAAAGCTGAAAAACATACTTGAATGATATTTAATAAAGTGTGTTATTGGAAAGTATTTTCTAAAATATGATC AAAATAAAAAGTTATTTCTATTCAGCACCTTATGGCTCGACCTTCGACCTCCACCGGACCTTCCACAACCATTGGCAACC ACCTAAACCGACGTTTGCAGGTGCCTACCCCTTCACTCTCCTCTGGTCTTGTGATGTTGTTCACTTCATCTCTTTCGAGC ATGCTTGCTCTTTGCTTCTTCTCCTTCTTAGTTCATGTTATGGTGGTGCTTGATGAGTACCATTTGTTGATGTTAGCCTT ATTGCAGGTGTTCTTGCAGTTTGGATTGTACCGACTAGGTTTTAAATTAAAACAACACAAATATTACTTTGAGAGTCACA GATCAAGAATTGGATGAAAATTAATTATGAGTTTGTTTGTTGGATCTGGTTGTGGTTATGTTAGTTCTTTGTTAATGTTT TGGTTCTAATTGGGGCTATGTTAGACTTATGTTCACGTTTGAGTTTACTAATCTGATACCAGTTTATTAGAGTATGCTAA CTTGTTCTATAATGTGTATTTGTTGTGCTTTACTTATAGGGTTTGATATCCTTTATTTGTAAGTGTAATTTCGTATTTGA AAATAAAAACGTAAGTAGTTACACTAACAACTACTAAAATCAATTGGTGCTTGCTGTGGTACCTTAAGCCAGACTAATGT GCGGTACCTAAAATGAGTCGGTTCAACAATAAAGACTCATGTACTGGTTAAAATTTTGATTGTGTTCTATCGTAATAATG CAGCGTTCCATTCTTAGGGACGTGATCAGATTTGAAAGTTGTGTTTTCTGAGCTCTATGCATCCATCTATCATGATCATT TTACGCGCATCTCCATCACCATCATTCGTACATTTTTAATCAAAAAATGAATTTCATGAGATAAAGTTAATTGACAAGTA AAGTAAAATCTAAAAATATAGTATTTACTTTGAATAACATGATAATAATCTATAGAATTACTTAATGGGGTACCATACCC AACAAAAATTGAGGGTACCACAGAATTTACCAAATCAATTTTGCATGTTTGTGGGTCTAAATCAGTGCGTGCAAGAGTTG GTTCATTTAATTAGTCTACCAATGACACATACTTATAAATAAAAATATATTAAAATAAATAAAGTTTAAAATAATTATTT AAATAAATCAATATCAATAACATTGATCAATATCAATCAATATATATTAGAAAAGAACAACGACTATCAAGCTAATTTGA TGACGTGACAACTCCTTGTGCAATCTGCCACGTGTCATTCCATTAGATAACTTCTCTTTTCTTGACACGTGTCATTCCAT TAGATAAGTTTCAAAAATGATGATATCTCATAAATCAACGCTTCCAAATATACATGAGCAGTTGTTGCTACGCCCATCCG GTTGTGGGTAGTCCCAAGCTTCTATGGGAAGAAATTGCCCTACTCCATGGATTTAGTGCTGATGGATGCAAAGGTATCAA TAAGTTATTGATTTCTGTTTATTTTAGAATCTTCACTGTCCATTCAAATCCTAATATTTTCTTAAATTAATATCAGGGCT GTAAGATCCATGCTTTTGTAACGCAGTCTCTGATTTACAAGTTTCAAGCTTTACTTAATGAGGGATGTGTTTATCACATT TTCTTCTTTGGAGTAGGGGAAAACGGAGGAAATTTCAGAACAACTTCCCATGCAAAATCATGATTTGTATGACTTGGTAT AAACACAATGATGTCATACTTTATGATTTATCTTTCATAGTCCTGATTTCGGTGATTTGTGCTACTATCACATTCTTTTT TTCCATAATTAATATGTGTTTATCGTCTGCTTTATTGGTGATTCTTTATATTTATGATTTGTGTTATTGTCTTCATGTTC GTGAAGAATGTTAAACGAGTTCCTGATGATCTCGATCAGGCTTAGAAGATAAATCTTTTTGTCTACTCTACTTAGCATTT TAGACTATTTTATTTCATCTGTTGTTTAATATATTTATAATAATCAAGTGATTGATTGATGCATTAAATACAATAGACGT TCTCCGTGCAACGCACAGGAAAAAAACACTAGTACACATTAAAGTTAAATAAAATATTGCATATGTTTTAATTTATGAAT GTGATATTGATGTCATGAATTATTAAGCATTGACTTAATTGCACTTTTGGTCCCCCAACTATTGCCTTCCTGCGAAAATT GTCCCCAAACTTTAAAATTAGTAAAAAAAAACGTCCTCCAACTATACATGTTGTTGCATTTTTGGTCTGCCGTTTGCCTT CCATGAGAAAACTAACGTGAGAAGCTGATGTGGCTCCCTCACGCGCGTCTCACGTGACTTTCTTCAGAAAAAAGAAAAGT AAAATAAAAAAATTCAATCTATGAAATTTAAAATTATAGAAAAATCCAATATAGTAGTAATAAAATTGATTTTTTTGTTT AAAAGTAATCCAATATAATTTGGCAACAGCAGCACGTGTTAAAAAACCTAGATTAGATTAGATCCTTTTATGAAAGCAGA GACGGTAGAAGAAAGGGGTCCCTGTTCCCGGCCGGCGTGGTCTTATTCCTCCTGAATTGACATCGAATTTTAGCTCCTTG TAATTACTCCTTCCCTCAACTCTAACTCATTTCCTTCTCTTCAAACCTAAGTTGTTGTTCTTCGGAGATATGTTGATTTA ATTTTGGTCTCTATTTGTTTTAGAACATGAAGCGCAAGCGCGGGCATAAGAAAGGGATGCCAAAGAAGAAAGAAGAAACC GATGAGTATAAAGATAACTCTGGAATGGAAGTTGACACACCTTCTTCCGATCTTGCTAACATAAACCCTGATGGTTCCAA GAAGTCTGTTGGCCGCGTTAAGGTCAAGCTCAGGGCACCAAACTTGTTGGACTCCCAACCAACCTCATCTGATGAGAGTA GCCACCAACATGCAAAATTAGGGGCTCCTTCAATCAGACCTGGTACTGGTAGCATCAAAATTAAGTCTTCAAAGGCTTTG GGATTAAATGCTGACAAACCTTTCTCAGAAACAAATCCCCGATATAATAAGCACCAATTGGATACTTCCTTAACGGTCTG CTCCAACTTTCATTGTCATTTTCCTTTTCCTTTTTCTTTTACTTTCTCAATCATTCATGTGTTTCTACTGCACAGATTAT AAGGAAGGTAATGAAAATGGAGGCTGCTGAACCCTTCAATGTCCCTGTTAACCCTCAAGCTCTGGGAATTCCTGTAAGTA CACACACTTTTTCATGCTGTTTTTTGTGTGTGTTAATCTGGATGACACTTGCTTTCGGTAGAAACTAGGTAGATATTTGT TATACTTTGACATGTGGTTGCTGTCTTTCTCTGGCATCGAGGTTAATCTATGATAATTGAGACTAATCTGATTCAATGTG AAACTTGGAACAAATATTGAGATTTTTTGTTATTATTACTTGTTTATATCTAAATGTCACACTGCTGTCTGGAACCAGGA CTATTTCGATATCATAGACATGCCAATGGATTTTGGAACCATATGCAGCAATCTTGAAAAGAATGACAAGTATATGAATT CAGAGGATGTCTATAGGGATGTTCAGTACATTTGGGACAACTGCTATAAGTATAACAATAAGGGTGACTATATCTTGGAT CTTATGAAGCGAGTAAAGAAGAACTTCATGAAGTACTGGGCTGCTGCTGGGTTATACAGTGAACCGCCAAAAGGGGCGAA AGGTGAAACATTCATATATAGGAAACATATTGGATAACATGAACTAGCCTTCACTATTAATTTTACATGGATAAAGATTG CTTCTTACAGTCTTACTAAATCTAATATTGACTTCTCTCTCTCTCTCTCTCTCCCCCTCTGTGTGTGTGTGTCTGTGTGT CAATTCTCCTTCCTCTTTCCTTTGTGAGAATGATAGGTACAAAGCATTTAGTGATGTCACTCTTGACTACGCTTTCTCAA ATCTGTTTGGCATGAAATATGCCTAGAAATATGCATCTTTTCCATTCGTTAGAGGAATCTTCTGCTTGAAGAAGATACTT GAGCGCACTTCTCTGCATGGTTGCTTGTCCTCTACCTGTCTTTTTCATGTCCCTTTTCTTTTTTGTTTTCCTATGCGCGG GGTGGGGAAGACAGAGGGAGGGAATATATGGTAGATCCTGTCATTTTGAAATGGAGAAACTATAGTTATGTTTATGATTT CATTTTCAAGAATCTACCTCCAAAACATACTGGTATTTATGAAGTCTTCTGAAATTTTACTTCATCCCGTCTTCCTCTTT TGAACTTTTTGTCGAAAGCTTGAGCTATAGACCCTTGGAGACTATCCGAGAAGCTCCTACCAAAGTGAAAATTTCTCTTA TCTTTGTAGTTCTTAACCCTACTCCAAAAATGTGTGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGTTCACTCGTGTATAGATTCATAGAATTAGAAGAAAAATCAAATTTTCAATTTTTTATT TTGTACCCTCCGGGGAAATGAAGGTTAGTGCTATTTTTTTGCATGATCTGCTGAAAATCAGCATTTCATAGAAGATACTG CACCAAGGTATTCTGATAACTATGTGGACATACATTTTTCTTATGGATCAGGTGCTGAGAAGACTTCGGAAGATATTGCA CTGTCTGATGGAAAAGCGGGGAAGGCTGCTCAACTTAAGCAGAAGAAAAAAAAGCGCCATGGGTATTATTTCCAAAAATT CAATTTAACCCCATTTATTGTATGATATTCCAATTCCTTATATGGTAATTATTCTTATAGTGGAAATGGTTGAGGGTTGA TATCACATGAACGATAAATGAAATATCTACTTGATAATGTGTTCATGGGTATTATGATCAAGTTAACAACTTATAGTGAA CAATACAAGTTTACAAATAGATTGTAGATTACTAACTTCTTTCAAAAAAATTGATATACGCTTGATAGTGTATTTTTCTC AAAGGTGAATTATAAATCTTAAATTTGAGAAGTTTTAACTTGGGAATTGCATTTCCTTCAGAATATGTTCTGCAAAATGT ATCTTTTAGTTTAGCTGTAAACTTTGGGTAATTATATTGATGTTGGTGAGTTTCTGACAAGGTGCCTTCTTCAGTCTCCA CTGCATGAATTCATGGATAACAACAAGTGCTTATGGACAAATAGTTTATTTGAAATGATTCTCATGCTTGTTTTATCTTA TCTGCAGAAGACACCATAAACATGACTGTTTATGCGCTATTTGTGTGCTAAAGCGCCGTAGGAAGGAACGGGAACGGGAG GAGAATGCTCAGATTACTAAAGGCAATTTTGCAACTGGTGGTGACAAGCACGCTAAAGAGTTTAAGCAAGAGGTATTGTA ATGTTTTGTTGCCTATGGTTAATCTTTTCAAATAGATGGCTGTTGAATTGTTTGCATTTTTTGGGCCCATATCATGTCTT GGTATGGTAAAATTCTTGACTGAAAAGATGGGTTGACAGCTAGCAGTAACAGATTTTCTTATTATATTTAATAACTGTAC TGGCTTTATATATCTGCCTTGGTGCTATTCATTATGCCAGTTATCCTAAAGTAATTTTTAAGAACATATGATCCCAAACA TTAAATGAGGGTTATGCACAAGCATGGAATAAGTCAAAGTATCAGCCCTAGTTTTTGGCCACCTAATCGATATTGACTAG CATGTAACATAAGTGAACGAATAACAATAATTTTGGTAACCTTGTCTTGTTTTAAAGGAACCAATGCTTGTAGAGAGCCC TGGTGGCGAGGATTCATCGTCAAATACGGATGAATCACTGGGTTCTGATGGAGATGCCGGGGTAGACAAAGGAGAGGTGG CAAAGATGGAGATTAGTGAGAAGCAGCGTAGCCCTTCTGAGGGAAAGCATGAAACAGTAGACGTTGATGATGATAACGAT GATGAAGACAACCATGATGTGGAGGAAGATGAGGAGGAGGAAGATGAAGATGAGGAAGAGATTGAAATGGACAGTCAGAA GAGAGAGATGGATGATACTTTAAAGCATGGTGGAACCTTGGCAGAGAAATCGAATGTTGGAGATGCAACTGTTCTTCATG ATGAATATAAAACAATGCAACAAGAAGGGCAAGCTGCAATTGTTCAGCAACAGAAGAAGCACAAGGTATTTCAAAGATTC GTACTAGAAATCACATCCTAGAATACAGTTACATTAAGCTGATCTTATGATTATTTACGTAATATGCAGTTGCATGATGT ACTTAATGGTTCAATCTGCTTGCAGGACTCACAAGATAAACATCAGAAGGCTAAGCTGCTTGAGAGCTTATGTGTTGAAA ACCCGAAACTTTCAAGCTTGTGTGGGATTCTCTTCCCCAATAATAGTCAGTCTGTGTGGAGTGGACCACACTCCCTATTG CATCAAAGAAATTCTGCTTGTGCTAGTTCAATTCATGCGGCTATTGGGACTTTCATGGAGTAGCTTCTTAATTTAACGGA TTAACTACTTCTAAATAGCCTGTTAAATTAATATTTTAGTTTTAGTTCACAATGTATGATAGTCACAATTTGTTGAGAAC GTTAGCAGATTTTGTAGTTTTGTATTCTGATCTTTCTTTATTAGTTTTTGTTAGACTGAGATCTGCCTGTGCATATAGAC AGGGCACTGTGACTCAGATCTTCTGTGCTAAAAATGAGAAATGTGTAAAAAAAAAAATTCGTGTTTTAACTTTTTGTTTT TACAAAAGCAAAATATAGAATGACATAACCATAGCACAAGTATCATAGTCAGGTAAATTTATTAAAACGCGCCTCTTCCT GTACTGAAATCTCTTATCGATACTAACTCTCAGCACCAGAGTTTTTCATTTATATTTTGATTTCTAAATGAAACATATTG TTTAACTAGCTTGGCTTAAAAATGGAAAATACATCAAATTACAATAGCTTCCCTAGCATCTGATAACAGACAGTCTCTTA ATTTGGAACGGAAAGCTAATGTCTTGATTAGGTCAATACTAACTCACTATTTTGCTTTTAAATCTTGAAGCTCTACCTGC ATATATGAAACTCAGTCTTACATCCTTGCCTCAAAAAAGGGGATATCCAACTTACGGCTTAGGACGAAAAAGACAAAGAT GGACGTTCCCAAAGGATAATCTGAACATTGACGAATCCAGGTCCATTAATTTACCTATAGCTTCTATAATTGAGTCCATG GCGTTTCTTCAAGACTCAATGTCTACGAACTTGGTAGATCATATTTCACTTCTCCCAGGTAGAGACCACATGCGGGAGCC ATTGGACTTGTGGCTGTAACCGTCTTCGCATTCAGAATTCTTTCAACTGAAATGGTAGAACAAATGAGATCATTTTTAGC CCAAATCAGAGCGTAAAAATGTCAAGTGTATATAGATAGCTATGACAAGTTTGAGTACCGTCTGGAATTGTCAAGTTTCC TGTGCCGACAGCTTTAAGAACACCAACAAGAAGCCTAACCTGGAATGGATTAACAGTATTAAGACCAAATGGATTGCGCC T
CDS sequence (LotjaGi6g1v0364000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGCAAGCGCGGGCATAAGAAAGGGATGCCAAAGAAGAAAGAAGAAACCGATGAGTATAAAGATAACTCTGGAAT GGAAGTTGACACACCTTCTTCCGATCTTGCTAACATAAACCCTGATGGTTCCAAGAAGTCTGTTGGCCGCGTTAAGGTCA AGCTCAGGGCACCAAACTTGTTGGACTCCCAACCAACCTCATCTGATGAGAGTAGCCACCAACATGCAAAATTAGGGGCT CCTTCAATCAGACCTGGTACTGGTAGCATCAAAATTAAGTCTTCAAAGGCTTTGGGATTAAATGCTGACAAACCTTTCTC AGAAACAAATCCCCGATATAATAAGCACCAATTGGATACTTCCTTAACGATTATAAGGAAGGTAATGAAAATGGAGGCTG CTGAACCCTTCAATGTCCCTGTTAACCCTCAAGCTCTGGGAATTCCTGACTATTTCGATATCATAGACATGCCAATGGAT TTTGGAACCATATGCAGCAATCTTGAAAAGAATGACAAGTATATGAATTCAGAGGATGTCTATAGGGATGTTCAGTACAT TTGGGACAACTGCTATAAGTATAACAATAAGGGTGACTATATCTTGGATCTTATGAAGCGAGTAAAGAAGAACTTCATGA AGTACTGGGCTGCTGCTGGGTTATACAGTGAACCGCCAAAAGGGGCGAAAGGTGCTGAGAAGACTTCGGAAGATATTGCA CTGTCTGATGGAAAAGCGGGGAAGGCTGCTCAACTTAAGCAGAAGAAAAAAAAGCGCCATGGAAGACACCATAAACATGA CTGTTTATGCGCTATTTGTGTGCTAAAGCGCCGTAGGAAGGAACGGGAACGGGAGGAGAATGCTCAGATTACTAAAGGCA ATTTTGCAACTGGTGGTGACAAGCACGCTAAAGAGTTTAAGCAAGAGGAACCAATGCTTGTAGAGAGCCCTGGTGGCGAG GATTCATCGTCAAATACGGATGAATCACTGGGTTCTGATGGAGATGCCGGGGTAGACAAAGGAGAGGTGGCAAAGATGGA GATTAGTGAGAAGCAGCGTAGCCCTTCTGAGGGAAAGCATGAAACAGTAGACGTTGATGATGATAACGATGATGAAGACA ACCATGATGTGGAGGAAGATGAGGAGGAGGAAGATGAAGATGAGGAAGAGATTGAAATGGACAGTCAGAAGAGAGAGATG GATGATACTTTAAAGCATGGTGGAACCTTGGCAGAGAAATCGAATGTTGGAGATGCAACTGTTCTTCATGATGAATATAA AACAATGCAACAAGAAGGGCAAGCTGCAATTGTTCAGCAACAGAAGAAGCACAAGGACTCACAAGATAAACATCAGAAGG CTAAGCTGCTTGAGAGCTTATGTGTTGAAAACCCGAAACTTTCAAGCTTGTGTGGGATTCTCTTCCCCAATAATAGTCAG TCTGTGTGGAGTGGACCACACTCCCTATTGCATCAAAGAAATTCTGCTTGTGCTAGTTCAATTCATGCGGCTATTGGGAC TTTCATGGAGTAG
Protein sequence (LotjaGi6g1v0364000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRKRGHKKGMPKKKEETDEYKDNSGMEVDTPSSDLANINPDGSKKSVGRVKVKLRAPNLLDSQPTSSDESSHQHAKLGA PSIRPGTGSIKIKSSKALGLNADKPFSETNPRYNKHQLDTSLTIIRKVMKMEAAEPFNVPVNPQALGIPDYFDIIDMPMD FGTICSNLEKNDKYMNSEDVYRDVQYIWDNCYKYNNKGDYILDLMKRVKKNFMKYWAAAGLYSEPPKGAKGAEKTSEDIA LSDGKAGKAAQLKQKKKKRHGRHHKHDCLCAICVLKRRRKEREREENAQITKGNFATGGDKHAKEFKQEEPMLVESPGGE DSSSNTDESLGSDGDAGVDKGEVAKMEISEKQRSPSEGKHETVDVDDDNDDEDNHDVEEDEEEEDEDEEEIEMDSQKREM DDTLKHGGTLAEKSNVGDATVLHDEYKTMQQEGQAAIVQQQKKHKDSQDKHQKAKLLESLCVENPKLSSLCGILFPNNSQ SVWSGPHSLLHQRNSACASSIHAAIGTFME
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 90 | 90 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| MobiDBLite | 27 | 41 | 15 | - | – | |
| MobiDBLite | 60 | 75 | 16 | - | – | |
| Gene3D | 94 | 224 | 131 | 1.1E-29 | ||
| PANTHER | 103 | 510 | 408 | 8.2E-161 | – | |
| SUPERFAMILY | 107 | 217 | 111 | 3.92E-28 | ||
| SMART | 110 | 221 | 112 | 1.1E-16 | ||
| Pfam | 123 | 205 | 83 | 4.9E-16 | ||
| ProSiteProfiles | 129 | 202 | 74 | 17.467 | ||
| PRINTS | 132 | 145 | 14 | 4.7E-11 | ||
| ProSitePatterns | 134 | 194 | 61 | - | ||
| PRINTS | 148 | 164 | 17 | 4.7E-11 | ||
| PRINTS | 183 | 202 | 20 | 4.7E-11 | ||
| MobiDBLite | 226 | 260 | 35 | - | – | |
| MobiDBLite | 281 | 398 | 118 | - | – | |
| MobiDBLite | 333 | 363 | 31 | - | – | |
| MobiDBLite | 364 | 395 | 32 | - | – | |
| Coils | 377 | 399 | 23 | - | – | |
| MobiDBLite | 432 | 451 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0364000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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