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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0364900 |
| Transcript ID | LotjaGi6g1v0364900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein family; TAIR: AT1G09660.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660/At1g09670; TrEMBL-Plants: tr|V7BU65|V7BU65_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0364900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67695582..67699948) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGGCGCACACACATTAACCTTCTCTCTTTCTCGAAATCCTTCTCTTCTCTTCTTCTGTGGTAGAGGAACCAGAAGGG CTTTGCGTTGTGCCTCCCTCACCCTCACAACTGTAAGTCTTCTCCTTCCCCTCTTCTCTCATGTTTTCCGCAATGCGCCA CTCACTCACTCACATAGTCTCCGTTTTTATTGACTTAATTCTCTTCTCTCTAACATTAACATATTACATATGCTTTGCTT TGCTTTCTTCGTTCGTTCATGCATCTGGCTACAATAAATACCTACAATACAACCTGAATACTGTTTAGGTCTACTACTGG CTGCATTTCTATTCTATACATCTGGATTCTAACTAGGTTTTATTTTCTTTACAAATTGGCGGGCGGCACAACAGAGCAGA GTAGATAGAGCAGATGGGAGAGAGGATCCCATCTGGGACTTATTTCCAGTTCCCTCCTCCCGGACCCGGACTTCCTCCAT CGCCTATTAGGTCCTCCTCTATTCCTTCAGATCGCGAAAGGTCCTCCCTCACTCACTCACTCACCTTTTTAATCATTTAT TTTTAATTTTCTGCCTTCAATTAATCACTCCCCTTGTTGCTAGTTGACAAAAATAAAGCGGGTTTTTCTTGTATACCTCC TGTGTGCATCTTTGTTTCGCATTTGGCATCGACCAATGCTATTTTATTTGTCACTTTTTATAAAGAGGTGGCTGGTACAC TTGTTTTGATTCATGTCATCTCCAGGTTTGTGCCTTGCTACATCTGTTACTTATATGTTAATGTCTAGGTGATGTTACTG TTGAAAATAATTTGCAGATATTTGGCTGAATTATTGGCAGAGAGGCAAAAGTTGGGACCATTTGTGCAAGTTCTTCCACA ATGTACCAGGCTCATAACTCAAGGTTTGTAAACCATCATCTATCTGTGCTTTTAACAATAGTTTCTTTGATTTCTGATCT TCGTAATTTGATGTTGTAGTGAACTTTATATATATATATATATATATAACAAAAAAAACCTTTTACTTTTTGAATTTTAG TTTGTATCAATTCTTTGCTACCAATCAGTGCTGGCAACTTGGGGAACAACTGTTCAAGGTTGTTGTTCAATCATCAATGT GGGGGACTCACTAGTCACAACTAGTTCCACATAATATTAATAATTATCAGACAATATCGATGTCATTTTAAGAACAATAA GAACATATACGTAAGAAAATATGAATGATTAGAATAATTTAGATTAGATGCCTGTTTGCTAGACTTGTTAATCCTGATTT TTCATGTCCTCTTGGTGCTCGAGATCATGTAACGGTTTTTCTGTAGTGCCATTTTTTGTCATACCTTCACTATGTAGATT TGGTGGCTTTCTTTAGAGAGACCTACCCACACCACTTCCACTCTTGTATTCTTTAAAGATTTTGTAGTTTTTCTCAATTT CAACTGTGGCTTTGCAGAAATCAGACGGATAACGGGCTTTAACCAAGGTTTCATTGAACATGATAGACCTGAGTCAGACA GTCCGTTTAGGTCCTTAAGTCAACATCCAAATAGTAGGCCAATGGATTTGGAGGGATGGCCTGCTGTACCAATTGAGGTA ATGCTACTTCATACCTATCTCTAGGACCTGTACAATAGTTCTTGAATTTTAAAATCATTTCATATTTATTGATCATCACG TGCATCTACTTTGGTGTCTATTGTCCTTTCTAAACAAAAATTTATTGGAAAAATAGACATGTGGCAATTTCAGCTGTGAT GTGTGCATGATGAACTTTAAAAAATTTATCCAACATATCATATTCCAGTTGGGGAAGTTTCTGTTTGTTTGAGCTATTGG CTTAATGATTTCATAATTGCATAAACATGTATATATCTGCAGTTGTCTCTCTCTCTCTGTCACCACCTTGCATGATTTGT GCATTTTGTTTTCCATTTCTCGTGTAGAGAAATATGCAAGCATAAAATTAGCATTTTTATCAGTTTCAACTTTAACTAGA GAGTCCTATAATTTAAAAAAGATATCTAGTGAGAAACAGCTATCAGATGAAGTTGTTTATTGGCATGGCTAATTCATTTC TGAAATTTTGCAAACTGGAAGTAAGACACATACCTGTGCAATAATTCTTCTTGCCTGGTGCTAACATGATGCCATTATTG GGGAAAGAAGATAAAATCAGCATTTTGTGAGCTCTCTCATCCGCCTTCCTCTCCCGGGAAGTCCTGTGGTATTTTCCACT CAGAAGGGATATTCCTTCTTTGCCAATCAGATATTGGCTCACAGAATTCGGCAAAAGATTATATCCACCTGCACATTTTA AATGATACTTTGCTACATAGTGACATAGTGTTGCAGGTCTTCAAAGGGTTTGTATGAGAAACATTCATTTATTGGAATGC AGAGTGTAAGTTCTTTTTGAGAATATTTCATCACTGAAAATATCCAGGTTAAATGGCAGTTTGGTGCATTACACATAGAA GAATTAGGAATTTAGCACTTTGATTGACATTTTTAAAATGTTGATTTTAGTTTTTAGCTTTTAAAAATGCTTTTATATAC CCCCTTAATCTTCCTTGGACCAGTCTGTGTACGTCATATATCTTAATCTTCCTTGGACCAGTCTATGTGCTTGCCAACCA GCTCCTTAACTTTATTAGGGAAAATTCACTGTACCTGTTTGTTGCTAGCTTTTGGTTCTCTGGAGTGTTAAAATCATAGA GGCCTTAGAATACACATCAAATGAATAAGTGCTCATAAATGGTCACTATACAAATTTTAACAATTCTTTTTTACAAAACT GTGAGAAAACTTGGGGGCAAGTGAGTTTTGCTTGCTATCACAACTTGTGTTTGTAAAGGGGGAGTTCTAAACAATACCAA ATTTCTTCATGCAGGACAATGGAAATCTGCAAAGAATAGCATCATTTCAAGCACCGCCTATGGGTTGGCCTGGGACACAA GGAGTTCCGACGACACCTGTAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTAGAGAAATATCCAAATGTAAGTAAAAT AACATGTTATTTAACTACAGTTTATATCCTTTTTTTTCCTTTCAATGTATTTGACTTCAACCTCAGCAGTATAATTTTGT TGGCCGAATTTTGGGACCTCGCGGGAACTCATTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTTATATCAGAGGCT GTGGCTCTGTGAAGGATTCTATTAAGGTAAGTTGGTTTGTAAGTATGCGCTATGAAGAATTATGTAGAGCTAATATGACT TCTTTTTTTAAATCATAGTTATTAGTAACTTTACTATAGATGTAGGAAAAGCTTTTCCATAATTATTAGTAATTTCATCC CAGAACACACTACTCATTATCCCACTACACTTAAGCTCAAGGCAGTTGTTGTCCAACTCGAGTGGTTGCTTCCTTCACCT TTTTGTCTTACCCCCTCCCTCATTTTTATGCAATTACTAAGAATATCTGTTTGGAGTTCTCATACAAGTAAGACCCCCAC ACCACATGTCATTTTTCATGTTGTGTTTCAACTTCCCTTTTTTAAATGTAGGAAGAGAAGCTTAAAGATAAACCTGGATA TGAGCACCTTAATGAACCATTGCATGTGTTGGTGGAGGCAGAATTTCCAGAGGATATAATCAATTCTCGCTTGGATCATG CGGTGGCGATACTAGAAAATCTTTTGAAGCCTGTGGTATGGATATATTGTTATAGTGAATTGCGTAACTGTGTGCCTCTC TCTATCTCTCTCTCTCTTTCTTAATCTTTGTTAATTTGGCTGCAGGATGAATCACTTGACCATTATAAGAAGCAGCAATT GAGGGAGTTAGCTATGATCAATGGTACTTTGAGGGAGGAAAGTCCAAGCATGAGCCCGAGTATGAGTCCAAGCTTGTCAC CATTTAACAGTACTGGAATGAAACGAGCCAAGACAGGAAGATGACCCTAATATGCTTGTTTACAATTGGACCATACATTT TTTTCAAGCTCTTAGAATTTGGAGGTGGCCTTTTCACTCCATAAACTCTGTCGGGCTTGAATCTCCTTGAGCACCTTGCA AGGATGACTGATGGTTCTCTGACGGCTATTCTTTGGTGTATTAACCGCCACAACATTGACAGTCATTTTGTTGAAGTTAT AGTATTAACTAATTTGCAGGTGCTACTTAGTAGCATACTCCTAGTTTGATTATTTTTTTCATTTGATTTTGCATTTGTCT AATTAAGTTACATGCGTATGTCATATATGCATGGTATTGGATTTTAAGCTAAATAAAACATGTGGAGTGGCTTTGATTAT TATATTGTGACCTGAATATTTTTGGCATCATTATTCAATAATTGTCA
CDS sequence (LotjaGi6g1v0364900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGAGGATCCCATCTGGGACTTATTTCCAGTTCCCTCCTCCCGGACCCGGACTTCCTCCATCGCCTATTAGGTC CTCCTCTATTCCTTCAGATCGCGAAAGATATTTGGCTGAATTATTGGCAGAGAGGCAAAAGTTGGGACCATTTGTGCAAG TTCTTCCACAATGTACCAGGCTCATAACTCAAGAAATCAGACGGATAACGGGCTTTAACCAAGGTTTCATTGAACATGAT AGACCTGAGTCAGACAGTCCGTTTAGGTCCTTAAGTCAACATCCAAATAGTAGGCCAATGGATTTGGAGGGATGGCCTGC TGTACCAATTGAGGACAATGGAAATCTGCAAAGAATAGCATCATTTCAAGCACCGCCTATGGGTTGGCCTGGGACACAAG GAGTTCCGACGACACCTGTAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTAGAGAAATATCCAAATCAGTATAATTTT GTTGGCCGAATTTTGGGACCTCGCGGGAACTCATTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTTATATCAGAGG CTGTGGCTCTGTGAAGGATTCTATTAAGGAAGAGAAGCTTAAAGATAAACCTGGATATGAGCACCTTAATGAACCATTGC ATGTGTTGGTGGAGGCAGAATTTCCAGAGGATATAATCAATTCTCGCTTGGATCATGCGGTGGCGATACTAGAAAATCTT TTGAAGCCTGTGGATGAATCACTTGACCATTATAAGAAGCAGCAATTGAGGGAGTTAGCTATGATCAATGGTACTTTGAG GGAGGAAAGTCCAAGCATGAGCCCGAGTATGAGTCCAAGCTTGTCACCATTTAACAGTACTGGAATGAAACGAGCCAAGA CAGGAAGATGA
Protein sequence (LotjaGi6g1v0364900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGERIPSGTYFQFPPPGPGLPPSPIRSSSIPSDRERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGFNQGFIEHD RPESDSPFRSLSQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLDVPVEKYPNQYNF VGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL LKPVDESLDHYKKQQLRELAMINGTLREESPSMSPSMSPSLSPFNSTGMKRAKTGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 11 | 25 | 15 | - | – | |
| PANTHER | 24 | 296 | 273 | 3.2E-122 | – | |
| PANTHER | 24 | 296 | 273 | 3.2E-122 | – | |
| Pfam | 34 | 69 | 36 | 6.1E-7 | ||
| MobiDBLite | 77 | 98 | 22 | - | – | |
| SMART | 141 | 238 | 98 | 1.1E-4 | ||
| CDD | 146 | 267 | 122 | 1.64555E-49 | – | |
| SUPERFAMILY | 150 | 267 | 118 | 3.8E-28 | ||
| MobiDBLite | 268 | 296 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0364900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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