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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0126429 |
| Transcript ID | Lj0g3v0126429.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: copper-transporting ATPase RAN1-like isoform X2 [Cicer arietinum] gi|502141831|ref|XP_004504660.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 18 | 18 | – | – | |
| SignalP | 1 | 31 | 31 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| PANTHER | 1 | 399 | 399 | 6.50E-249 | – | |
| Phobius | 1 | 332 | 332 | – | – | |
| PANTHER | 1 | 399 | 399 | 6.50E-249 | – | |
| Pfam | 2 | 44 | 43 | 9.10E-10 | ||
| TIGRFAM | 3 | 382 | 380 | 2.90E-124 | ||
| TMHMM | 4 | 26 | 23 | – | – | |
| Gene3D | 24 | 68 | 45 | 4.00E-55 | ||
| Pfam | 49 | 287 | 239 | 7.10E-43 | – | |
| SUPERFAMILY | 52 | 71 | 20 | 2.11E-61 | ||
| PRINTS | 53 | 67 | 15 | 1.10E-23 | – | |
| ProSitePatterns | 55 | 61 | 7 | – | ||
| Gene3D | 69 | 200 | 132 | 1.10E-18 | ||
| SUPERFAMILY | 130 | 379 | 250 | 2.11E-61 | ||
| TIGRFAM | 152 | 353 | 202 | 1.60E-48 | ||
| PRINTS | 198 | 209 | 12 | 1.10E-23 | – | |
| Gene3D | 201 | 341 | 141 | 4.00E-55 | ||
| PRINTS | 220 | 230 | 11 | 1.10E-23 | – | |
| PRINTS | 245 | 261 | 17 | 1.80E-10 | ||
| PRINTS | 273 | 292 | 20 | 1.10E-23 | – | |
| PRINTS | 273 | 289 | 17 | 1.80E-10 | ||
| PRINTS | 296 | 308 | 13 | 1.10E-23 | – | |
| PRINTS | 304 | 329 | 26 | 1.80E-10 | ||
| Phobius | 333 | 356 | 24 | – | – | |
| TMHMM | 333 | 355 | 23 | – | – | |
| Phobius | 357 | 361 | 5 | – | – | |
| TMHMM | 360 | 382 | 23 | – | – | |
| Phobius | 362 | 382 | 21 | – | – | |
| Phobius | 383 | 399 | 17 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). |
Expression pattern of Lj0g3v0126429.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0126429.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.