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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0627680 |
| Transcript ID | Lj1g3v0627680.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA polymerase lambda-like isoform X1 [Cicer arietinum] gi|502181313|ref|XP_004516776.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 519 | 502 | 6.00E-216 | – | |
| PANTHER | 18 | 519 | 502 | 6.00E-216 | – | |
| SUPERFAMILY | 19 | 100 | 82 | 3.49E-09 | ||
| Gene3D | 20 | 96 | 77 | 3.40E-07 | ||
| ProSiteProfiles | 22 | 90 | 69 | 10.78 | ||
| MobiDBLite | 99 | 162 | 64 | – | – | |
| Gene3D | 184 | 269 | 86 | 4.50E-29 | ||
| SUPERFAMILY | 185 | 266 | 82 | 1.05E-19 | ||
| SMART | 189 | 518 | 330 | 3.60E-111 | ||
| Pfam | 191 | 255 | 65 | 4.70E-14 | ||
| CDD | 192 | 517 | 326 | 1.83E-112 | ||
| PRINTS | 242 | 259 | 18 | 1.10E-25 | ||
| SUPERFAMILY | 269 | 324 | 56 | 4.58E-16 | – | |
| Gene3D | 270 | 325 | 56 | 1.90E-22 | – | |
| Pfam | 277 | 323 | 47 | 3.00E-18 | ||
| PRINTS | 283 | 300 | 18 | 2.30E-22 | ||
| PRINTS | 314 | 328 | 15 | 1.10E-25 | ||
| Pfam | 326 | 439 | 114 | 4.70E-31 | ||
| Gene3D | 326 | 447 | 122 | 4.00E-32 | – | |
| SUPERFAMILY | 326 | 518 | 193 | 5.65E-50 | – | |
| PRINTS | 353 | 367 | 15 | 2.30E-22 | ||
| PRINTS | 354 | 373 | 20 | 1.10E-25 | ||
| ProSitePatterns | 356 | 375 | 20 | – | ||
| PRINTS | 367 | 375 | 9 | 2.30E-22 | ||
| PRINTS | 431 | 439 | 9 | 1.10E-25 | ||
| PRINTS | 432 | 441 | 10 | 2.30E-22 | ||
| PRINTS | 446 | 453 | 8 | 1.10E-25 | ||
| Pfam | 447 | 518 | 72 | 6.40E-18 | ||
| Gene3D | 448 | 518 | 71 | 7.70E-19 | ||
| PRINTS | 448 | 461 | 14 | 2.30E-22 | ||
| PRINTS | 499 | 517 | 19 | 2.30E-22 | ||
| PRINTS | 500 | 517 | 18 | 1.10E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | Nucleotidyltransferase activity | Catalysis of the transfer of a nucleotidyl group to a reactant. | ||
| Molecular function | DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a nucleic acid template and a 3'hydroxyl group. |
Expression pattern of Lj1g3v0627680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0627680.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.