Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001357
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 63 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.678s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0116489.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508727720|gb|EOY19617.1| chr0 51252598 51262175 -
5 domain predictions
 –
Lj0g3v0205999.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like isoform X1 [Cicer arietinum] gi|502149960|ref|XP_004507725.1| chr0 102557208 102558901 -
7 domain predictions
 –
Lj0g3v0217409.1
n.a. PREDICTED: DNA topoisomerase 2-binding protein 1-A-like [Glycine max] gi|356560149|ref|XP_003548358.1| chr0 110653190 110665368 +
9 domain predictions
 –
Lj0g3v0217409.2
n.a. PREDICTED: DNA topoisomerase 2-binding protein 1-A-like [Glycine max] gi|356560149|ref|XP_003548358.1| chr0 110653190 110665368 +
9 domain predictions
 –
Lj0g3v0245549.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508727722|gb|EOY19619.1| chr0 127325491 127334340 +
5 domain predictions
 –
Lj0g3v0294399.1
n.a. PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Cicer arietinum] gi|502110153|ref|XP_004493812.1| chr0 152981379 152986817 -
8 domain predictions
 –
Lj0g3v0315339.1
n.a. zinc finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297838453|ref|XP_002887108.1| chr0 164614594 164617382 -
7 domain predictions
 –
Lj0g3v0359589.1
n.a. PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1| chr0 189299157 189307621 +
7 domain predictions
 –
Lj1g3v0049850.1
n.a. PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1| chr1 244558 260965 +
7 domain predictions
 –
Lj1g3v0627680.1
n.a. PREDICTED: DNA polymerase lambda-like isoform X1 [Cicer arietinum] gi|502181313|ref|XP_004516776.1| chr1 8233677 8249407 -
4 domain predictions
 –
Lj1g3v1788440.1
n.a. DNA topoisomerase 2-binding protein [Medicago truncatula] gi|357465905|ref|XP_003603237.1| chr1 21527958 21534042 -
7 domain predictions
 –
Lj1g3v1932550.1
n.a. PREDICTED: pescadillo homolog isoform X2 [Cicer arietinum] gi|502154817|ref|XP_004509849.1| chr1 23069183 23074882 +
7 domain predictions
 –
Lj1g3v3137940.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] gi|356523718|ref|XP_003530482.1| chr1 35782084 35788576 -
7 domain predictions
 –
Lj1g3v4225550.1
n.a. GCN5-related N-acetyltransferase; BRCT [Medicago truncatula] gi|87241454|gb|ABD33312.1| chr1 49757297 49764459 +
7 domain predictions
 –
Lj1g3v4225550.2
n.a. GCN5-related N-acetyltransferase; BRCT [Medicago truncatula] gi|87241454|gb|ABD33312.1| chr1 49757297 49764459 +
7 domain predictions
 –
Lj1g3v4483410.1
n.a. PREDICTED: poly [ADP]-ribose] gi|502109943|ref|XP_004493762.1| chr1 52498169 52507672 +
7 domain predictions
 –
Lj1g3v4764360.1
n.a. Mediator of DNA damage checkpoint protein [Medicago truncatula] gi|357466939|ref|XP_003603754.1| chr1 57344942 57348889 -
5 domain predictions
 –
Lj2g3v0866680.1
n.a. DNA topoisomerase 2-binding protein [Medicago truncatula] gi|357465905|ref|XP_003603237.1| chr2 13380995 13388365 +
7 domain predictions
 –
Lj2g3v1510660.1
n.a. PREDICTED: poly [ADP]-ribose] gi|502109943|ref|XP_004493762.1| chr2 23942238 23959031 +
7 domain predictions
 –
Lj2g3v3187350.1
n.a. Pescadillo-like protein [Medicago truncatula] gi|357510461|ref|XP_003625519.1| chr2 40929657 40931706 -
7 domain predictions
 –
Lj3g3v0139460.1
n.a. PREDICTED: DNA repair protein XRCC1-like [Cicer arietinum] gi|502080899|ref|XP_004486715.1| chr3 1053487 1057520 -
7 domain predictions
 –
Lj3g3v2926310.3
n.a. PREDICTED: replication factor C subunit 1-like [Glycine max] gi|356517673|ref|XP_003527511.1| chr3 36546751 36549341 -
7 domain predictions
 –
Lj3g3v2995640.1
n.a. RecName: Full=Putative poly [ADP]-ribose] gi|118573101|sp|Q1SGF1.1|PARP3_MEDTR chr3 37177108 37181231 +
5 domain predictions
 –
Lj5g3v1600740.1
n.a. BRCT domain-containing protein [Medicago truncatula] gi|357442293|ref|XP_003591424.1| chr5 23200660 23207871 -
8 domain predictions
 –
Lj6g3v1916100.1
n.a. Mediator of DNA damage checkpoint protein [Medicago truncatula] gi|357447487|ref|XP_003594019.1| chr6 21656447 21662143 -
7 domain predictions
 –
Lj6g3v1946520.1
n.a. PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max] gi|356557797|ref|XP_003547197.1| chr6 22285946 22290603 -
7 domain predictions
 –
LotjaGi1g1v0026600.1
n.a. Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0026600 LjG1.1_chr1 3202759 3213307 +
4 domain predictions
 –
LotjaGi1g1v0157100.1
n.a. DNA topoisomerase 2-binding 1; TAIR: AT1G77320.3 transcription coactivator; Swiss-Prot: sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1; TrEMBL-Plants: tr|A0A0R0FVP4|A0A0R0FVP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157100 LjG1.1_chr1 29157069 29168949 +
5 domain predictions
 –
LotjaGi1g1v0157100.2
n.a. DNA topoisomerase 2-binding protein 1; TAIR: AT1G77320.1 transcription coactivator; Swiss-Prot: sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A; TrEMBL-Plants: tr|A0A0R0FVP4|A0A0R0FVP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157100 LjG1.1_chr1 29157101 29168492 +
6 domain predictions
 –
LotjaGi1g1v0372400_LC.1
n.a. BRCT domain DNA repair protein; TAIR: AT2G26270.1 BRCT domain DNA repair protein; Swiss-Prot: sp|Q2YR11|MNME_BRUA2 tRNA modification GTPase MnmE; TrEMBL-Plants: tr|I3S499|I3S499_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0372400_LC LjG1.1_chr1 85063525 85069883 -
2 domain predictions
 –
LotjaGi1g1v0372400_LC.2
n.a. BRCT domain DNA repair protein; TAIR: AT2G26270.1 BRCT domain DNA repair protein; Swiss-Prot: sp|Q2YR11|MNME_BRUA2 tRNA modification GTPase MnmE; TrEMBL-Plants: tr|I3S499|I3S499_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0372400_LC LjG1.1_chr1 85063737 85069874 -
2 domain predictions
 –
LotjaGi1g1v0372400_LC.3
n.a. BRCT domain DNA repair protein; TAIR: AT2G26270.1 BRCT domain DNA repair protein; Swiss-Prot: sp|Q2YR11|MNME_BRUA2 tRNA modification GTPase MnmE; TrEMBL-Plants: tr|I3S499|I3S499_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0372400_LC LjG1.1_chr1 85063947 85068419 -
2 domain predictions
 –
LotjaGi1g1v0372400_LC.4
n.a. BRCT domain DNA repair protein; TAIR: AT2G26270.1 BRCT domain DNA repair protein; Swiss-Prot: sp|Q2YR11|MNME_BRUA2 tRNA modification GTPase MnmE; TrEMBL-Plants: tr|I3S499|I3S499_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0372400_LC LjG1.1_chr1 85063947 85069043 -
2 domain predictions
 –
LotjaGi1g1v0390500.1
n.a. Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0390500 LjG1.1_chr1 87407293 87413728 +
4 domain predictions
 –
LotjaGi1g1v0529200.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT2G33540.1 C-terminal domain phosphatase-like 3; Swiss-Prot: sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3; TrEMBL-Plants: tr|I1KWR8|I1KWR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529200 LjG1.1_chr1 105567118 105575319 -
4 domain predictions
 –
LotjaGi1g1v0668900.1
n.a. PAX-interacting protein 1; TAIR: AT2G41450.1 N-acetyltransferase; Swiss-Prot: sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1; TrEMBL-Plants: tr|K7KER9|K7KER9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0668900 LjG1.1_chr1 123160486 123172893 +
4 domain predictions
 –
LotjaGi1g1v0705900.1
n.a. breast cancer associated RING 1; TAIR: AT1G04020.1 breast cancer associated RING 1; Swiss-Prot: sp|F4I443|BARD1_ARATH BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr|A0A0B2PNV8|A0A0B2PNV8_GLYSO Protein BREAST CANCER SUSCEPTIBILITY 1 like; Found in the gene: LotjaGi1g1v0705900 LjG1.1_chr1 127440182 127446734 -
5 domain predictions
 –
LotjaGi1g1v0711100.1
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100 LjG1.1_chr1 127942347 127951960 -
4 domain predictions
 –
LotjaGi1g1v0711100.2
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100 LjG1.1_chr1 127943481 127951891 -
4 domain predictions
 –
LotjaGi1g1v0711100.3
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100 LjG1.1_chr1 127943481 127952773 -
4 domain predictions
 –
LotjaGi1g1v0744300_LC.1
n.a. PAX-interacting protein 1; TAIR: AT4G03130.1 BRCT domain-containing DNA repair protein; Swiss-Prot: sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1; TrEMBL-Plants: tr|K7MZF3|K7MZF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0744300_LC LjG1.1_chr1 131785708 131790904 -
3 domain predictions
 –
LotjaGi2g1v0251700.1
n.a. RING/U-box protein; TAIR: AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|I1N6L6|I1N6L6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251700 LjG1.1_chr2 71726160 71733037 +
4 domain predictions
 –
LotjaGi2g1v0314500.2
n.a. DNA polymerase lambda-like protein; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|A0A072TY09|A0A072TY09_MEDTR DNA polymerase lambda-like protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 78998143 +
2 domain predictions
 –
LotjaGi2g1v0314500.3
n.a. DNA polymerase lambda-like protein; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|A0A072TY09|A0A072TY09_MEDTR DNA polymerase lambda-like protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 79002829 +
2 domain predictions
 –
LotjaGi2g1v0314500.4
n.a. DNA polymerase lambda; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|I1JCZ1|I1JCZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 79002829 +
3 domain predictions
 –
LotjaGi2g1v0337700.1
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi2g1v0337700 LjG1.1_chr2 81476265 81488352 +
4 domain predictions
 –
LotjaGi2g1v0337700.2
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi2g1v0337700 LjG1.1_chr2 81476353 81488341 +
4 domain predictions
 –
LotjaGi2g1v0461300.1
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437511 95456871 +
4 domain predictions
 –
LotjaGi2g1v0461300.2
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437558 95455220 +
4 domain predictions
 –
LotjaGi2g1v0461300.3
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437598 95456661 +
2 domain predictions
 –