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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2838190 |
| Transcript ID | Lj1g3v2838190.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Luc7-like protein [Medicago truncatula] gi|357507823|ref|XP_003624200.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 3 | 11 | 9 | – | – | |
| Phobius | 12 | 15 | 4 | – | – | |
| Pfam | 15 | 119 | 105 | 6.20E-11 | ||
| PANTHER | 16 | 92 | 77 | 1.70E-128 | – | |
| PANTHER | 16 | 92 | 77 | 1.70E-128 | ||
| Phobius | 16 | 360 | 345 | – | – | |
| MobiDBLite | 133 | 153 | 21 | – | – | |
| Pfam | 156 | 274 | 119 | 4.30E-33 | ||
| PANTHER | 160 | 360 | 201 | 1.70E-128 | ||
| PANTHER | 160 | 360 | 201 | 1.70E-128 | – | |
| Coils | 172 | 192 | 21 | – | – | |
| Coils | 248 | 271 | 24 | – | – | |
| MobiDBLite | 260 | 360 | 101 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. | ||
| Cellular component | U1 snRNP | A ribonucleoprotein complex that contains small nuclear RNA U1. | ||
| Biological process | MRNA splice site selection | Selection of a splice site by components of the assembling spliceosome. |
Expression pattern of Lj1g3v2838190.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2838190.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.