Domain Predictions — View

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PF03194

Source: Pfam

Description

LUC7 N_terminus

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003729 View details of GO:0003729 AmiGO InterPro QuickGO	Molecular function	MRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.	Subterm of GO:0003723
GO:0005685 View details of GO:0005685 AmiGO InterPro QuickGO	Cellular component	U1 snRNP	A ribonucleoprotein complex that contains small nuclear RNA U1.	Subterm of GO:0097525
GO:0006376 View details of GO:0006376 AmiGO InterPro QuickGO	Biological process	MRNA splice site selection	Selection of a splice site by components of the assembling spliceosome.	Subterm of GO:0022618 Part of GO:0000245

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v2838190.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Luc7-like protein [Medicago truncatula] gi\|357507823\|ref\|XP_003624200.1\|	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF32 mobidb-lite	6
Lj1g3v2838190.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Luc7-like protein [Medicago truncatula] gi\|357507823\|ref\|XP_003624200.1\|	Domains Coil IPR004882 NON_CYTOPLASMIC_DOMAIN PF03194 PTHR12375 PTHR12375:SF32 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-noTM_EUK mobidb-lite	12
Lj3g3v3640160.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: luc7-like protein 3-like isoform X1 [Cicer arietinum] gi\|502146194\|ref\|XP_004506345.1\|	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF18 mobidb-lite	6
LotjaGi1g1v0487100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	LUC7-related protein; TAIR: AT3G03340.1 LUC7 related protein; Swiss-Prot: sp\|Q9Y383\|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2; TrEMBL-Plants: tr\|V7B1L9\|V7B1L9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0487100	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF41 mobidb-lite	6
LotjaGi3g1v0544900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	LUC7; TAIR: AT5G51410.1 LUC7 N terminus domain-containing protein; Swiss-Prot: sp\|Q3SX41\|LC7L3_BOVIN Luc7-like protein 3; TrEMBL-Plants: tr\|I3T676\|I3T676_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0544900	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF43 mobidb-lite	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00