Domain Predictions — View

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IPR004882

Source: InterPro

Description

IPR004882 is a Luc7-related.

<p>This family consists of several Luc7 protein homologues that are restricted to eukaryotes. In budding yeast, Luc7 is an essential subunit of the yeast U1 snRNP, which forms the spliceosomal commitment complex with other proteins that targets pre-mRNA to the splicing pathway [[cite:PUB00067981], [cite:PUB00016922]]. Its N-terminal zinc finger has been found to bind pre-mRNA [[cite:PUB00067981]]. This entry also contains human and mouse Luc7 like (LUC7L) proteins [[cite:PUB00016923]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003729 View details of GO:0003729 AmiGO InterPro QuickGO	Molecular function	MRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.	Subterm of GO:0003723
GO:0005685 View details of GO:0005685 AmiGO InterPro QuickGO	Cellular component	U1 snRNP	A ribonucleoprotein complex that contains small nuclear RNA U1.	Subterm of GO:0097525
GO:0006376 View details of GO:0006376 AmiGO InterPro QuickGO	Biological process	MRNA splice site selection	Selection of a splice site by components of the assembling spliceosome.	Subterm of GO:0022618 Part of GO:0000245

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v2838190.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Luc7-like protein [Medicago truncatula] gi\|357507823\|ref\|XP_003624200.1\|	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF32 mobidb-lite	6
Lj1g3v2838190.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Luc7-like protein [Medicago truncatula] gi\|357507823\|ref\|XP_003624200.1\|	Domains Coil IPR004882 NON_CYTOPLASMIC_DOMAIN PF03194 PTHR12375 PTHR12375:SF32 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-noTM_EUK mobidb-lite	12
Lj3g3v3640160.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: luc7-like protein 3-like isoform X1 [Cicer arietinum] gi\|502146194\|ref\|XP_004506345.1\|	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF18 mobidb-lite	6
LotjaGi1g1v0487100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	LUC7-related protein; TAIR: AT3G03340.1 LUC7 related protein; Swiss-Prot: sp\|Q9Y383\|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2; TrEMBL-Plants: tr\|V7B1L9\|V7B1L9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0487100	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF41 mobidb-lite	6
LotjaGi3g1v0544900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	LUC7; TAIR: AT5G51410.1 LUC7 N terminus domain-containing protein; Swiss-Prot: sp\|Q3SX41\|LC7L3_BOVIN Luc7-like protein 3; TrEMBL-Plants: tr\|I3T676\|I3T676_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0544900	Domains Coil IPR004882 PF03194 PTHR12375 PTHR12375:SF43 mobidb-lite	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00