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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2575040 |
| Transcript ID | Lj4g3v2575040.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Glycine max] gi|356528278|ref|XP_003532731.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 64 | 34 | 1.00E-266 | – | |
| PANTHER | 31 | 64 | 34 | 1.00E-266 | – | |
| MobiDBLite | 35 | 76 | 42 | – | – | |
| PANTHER | 91 | 109 | 19 | 1.00E-266 | – | |
| PANTHER | 91 | 109 | 19 | 1.00E-266 | – | |
| PANTHER | 171 | 438 | 268 | 1.00E-266 | – | |
| PANTHER | 171 | 438 | 268 | 1.00E-266 | – | |
| Pfam | 192 | 240 | 49 | 1.20E-07 | ||
| ProSiteProfiles | 193 | 227 | 35 | 11.071 | ||
| TIGRFAM | 195 | 229 | 35 | 2.40E-07 | ||
| ProSiteProfiles | 228 | 262 | 35 | 8.616 | ||
| TIGRFAM | 230 | 263 | 34 | 0.0013 | ||
| Pfam | 263 | 311 | 49 | 5.80E-10 | ||
| ProSiteProfiles | 263 | 297 | 35 | 9.58 | ||
| TIGRFAM | 266 | 299 | 34 | 5.00E-04 | ||
| ProSiteProfiles | 298 | 332 | 35 | 11.203 | ||
| TIGRFAM | 300 | 332 | 33 | 1.70E-06 | ||
| Pfam | 332 | 377 | 46 | 4.80E-10 | ||
| ProSiteProfiles | 333 | 367 | 35 | 11.575 | ||
| SUPERFAMILY | 335 | 467 | 133 | 2.31E-06 | ||
| TIGRFAM | 335 | 368 | 34 | 1.80E-05 | ||
| ProSiteProfiles | 368 | 402 | 35 | 8.517 | ||
| TIGRFAM | 370 | 403 | 34 | 8.20E-04 | ||
| Gene3D | 374 | 452 | 79 | 2.10E-06 | ||
| ProSiteProfiles | 403 | 437 | 35 | 9.536 | ||
| Pfam | 405 | 434 | 30 | 0.0011 | ||
| ProSiteProfiles | 438 | 472 | 35 | 7.169 | ||
| Pfam | 445 | 468 | 24 | 0.87 | ||
| Gene3D | 453 | 570 | 118 | 5.50E-04 | ||
| ProSiteProfiles | 507 | 541 | 35 | 6.73 | ||
| ProSiteProfiles | 542 | 576 | 35 | 8.846 | ||
| Pfam | 546 | 572 | 27 | 0.059 | ||
| ProSiteProfiles | 679 | 709 | 31 | 6.489 | ||
| Gene3D | 690 | 810 | 121 | 3.60E-09 | ||
| SUPERFAMILY | 690 | 782 | 93 | 6.07E-10 | ||
| ProSiteProfiles | 713 | 747 | 35 | 10.358 | ||
| PANTHER | 714 | 733 | 20 | 1.00E-266 | – | |
| PANTHER | 714 | 733 | 20 | 1.00E-266 | – | |
| TIGRFAM | 717 | 744 | 28 | 5.80E-04 | ||
| Pfam | 717 | 744 | 28 | 1.40E-04 | ||
| ProSiteProfiles | 748 | 782 | 35 | 6.182 | ||
| Pfam | 781 | 831 | 51 | 1.40E-07 | ||
| PANTHER | 782 | 902 | 121 | 1.00E-266 | – | |
| PANTHER | 782 | 902 | 121 | 1.00E-266 | – | |
| ProSiteProfiles | 783 | 817 | 35 | 9.745 | ||
| TIGRFAM | 785 | 815 | 31 | 7.70E-04 | ||
| ProSiteProfiles | 818 | 852 | 35 | 9.723 | ||
| Gene3D | 819 | 880 | 62 | 1.20E-07 | ||
| SUPERFAMILY | 819 | 879 | 61 | 6.07E-10 | ||
| TIGRFAM | 821 | 853 | 33 | 1.50E-05 | ||
| ProSiteProfiles | 853 | 887 | 35 | 11.729 | ||
| Pfam | 855 | 900 | 46 | 3.50E-11 | ||
| TIGRFAM | 857 | 887 | 31 | 1.50E-05 | ||
| ProSiteProfiles | 888 | 902 | 15 | 5.075 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2575040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2575040.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.