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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0001000 |
| Transcript ID | LotjaGi1g1v0001000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate receptor; TAIR: AT4G35290.1 glutamate receptor 2; Swiss-Prot: sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2; TrEMBL-Plants: tr|I1M634|I1M634_SOYBN Glutamate receptor; Found in the gene: LotjaGi1g1v0001000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:393358..397770) extracted from Lotus japonicus Gifu genome v1.2.
CACACGTTGAAAATGAGATAAATGGAAGCGTGTTGCGAATCAGGGTATGCAGTTCAAAGTCCAAAATGGACACCGAGTTG AGTTGTCACTTTGCACTCGACTTGACACATACTTACCACTCACTGTGGTGGTGGTGGAGTGGAGTGGAGGTGGTCCTCCC AGTCTAATTATAGTTCTGAACCCTACTCCACTCAACTCAACTCCGGGTTTGTGCTCTCATTGTCTCCCGCTAGTTAATTA AAATCCCATCTTCTATTCTGTTCACTTCACCAATCACCACACCACACACATTCCATGCCTTCATCTCTTTTCTTTCTTCC CTGCTTCAATTGAATTTATTATAACATTCACAAACCAAACCAAAACGCATCGTACATTACAACTGCAGTCTGCATGCAGC AGCAGCTAGTCTATCACGACCACCACGGGTTCCGGTTCTGGATGAATCTGCTGAGCTTGTGCCTGTGCCTGTGCCTGTGC CTTGCATTGCACAGAGCACCAGGGGAAGGAGCTTCCAGACATGACAACGTCGTCGTCAATGTCGGTGCCATATTCACTCT GAAGACTATAAACGGAAAAGTCTCCAAGATTGCCATCGAAGCTGCACAGAAAGATGTCAATTCCGATCCTCGCATCTTGG GTGGACGTAAACTTTCCATAACCATCCATGATTCTAACTTCAGTGGCTTTCTAGGCTTTATTGGGGGTATTCAAATTCAC TCACTTCCTTCTTTGTTTAACTTAATTGTATAAATTCTTATACTCCTTTACCTGGATCCTGCTATTCAATCACTTTGTTA ATTCATTCTTATTTAAACTTGACTGATAATAGCCCTCAGGTTCTTGATGACTGATACTGTAGCTATAATTGGTCCACAAA ATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCAAGTTCCTCTGCTATCTTTCACGGCTTTGGATCCC ACCCTCACACCTCTTCAGTGTCCTTATTTTGTCCAAACTGCACCCAGTGACCTGTTTCAGATGACTGCAGTTGCTGACGT GATAAGTTATTTTGGTTGGAGGCAGGTCATTGCAGTTTATAGCGATGATGATCAGAGTCGAAACGGGGTAGCTGTCTTGG GGGACAAACTTGCTCTCAGACGCTGTCAATTGTCTTACAAAGCAGCACTGCCCCCGGATCCAACCGCCACTGCAGGTCAT GTTACTGATCAATTGCTCAAGATAAGAAGCATGGAAGCTCGAATAATTGTTGTGCACACCTACGCCATTACAGGTGCCTT GGTTTTCGACATGGCTCAAAAACTAGGGATGATGAGCAAAGGCTATGTCTGGATAGCTACTGCTTGGTTATCAACTGTTT TAGATTCAACTTCACCTTCATCGCTTCCTTTAAATACTTCTAACTCAATTCAAGGCGTTCTTACACTTCGCCCTCACACC CCTCAGTCAAGAAAGAAGCAGGCATTTATCTCGAGGTGGAACCACATAAGTAATGGCTCAATTGGGTTAAATCCATATGG CCTGTATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAATTATTTTTTGATCAGAATCAAACCATTTCCTTCT CTAATAATACAAATTTAAGTGGCACCAGGGAAGAGACTACTCTGAATCTTGGTGCTCTGCACGTTTTTGATGGAGGGAAA CAGTTACTTGATAACATATTGCGCATTAATATGACTGGGTTGACAGGACCTATTCAATTTGTTTCAGACAGATCTCCTTT ACATCCATCATATGACATCCTTAATGTACTTGCTACTGGTTATAGGAGAATTGGATACTGGTCTAATTATTCAGGGCTCT CTGTAATATCCCCTGAGAAACTTCACACTAAGCCTGCCAATCGTTCAATTTCGAACCAGCGTCTACACCGTGTCATATGG CCTGGAAATACAACAGAAAAGCCTCGTGGGTGGGTTTTCCCAAATAATGGAAGGCAACTCAGAATTGGAGTTCCCAACAG AGTTAGTTATGGGGACATGGTGTCACAAACAAATGGCACCACTGCAGTTCAAGGATATTGCATAGATATATTCTTGGCCG CCATAAAATTGCTCCCATATGCATTTCAATATAAGTTTGTTCTGTTTGGAGATGGACATAAGAACCCGAGCTACTATGAT CTTGTCAATATGATTACTTCTGATGTCAGTAATACTCAGAAATTATAATCCCTTTAATTAATAAAGTTATGATCACTGTA TTGCTTTTACTGATGGTATGTCACTTGCATTTACAGTCTTTTGATGCTGTTGTGGGTGACATTGCTATTGTCACTAGCCG GACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGTTTAGTTGTGGTTGCTCCGGTGAAAAAGTTGAAGACAA GTGCTTGGGCTTTCTTGAGACCGTTTACTCCACAGATGTGGGGTGTCACTGCACTTTTTCTCCTTCTTGTTGGAATAGTG GTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCTCCAAAGAAACAGATGGTTACGATTCTTTGGTAAGT CTTTTCTTATTGTTACATTTGTTCTCATCAGCCAGTATGACAATATGTACTTAAAAGTGTCATGCAAAGTAATATTATTC AAGAGAACTTGTCCAGTGTATTTCTGGAGCAGCCCAAGTAACTTGTATAACTACTTATCATAGAACCTGATTTACATTCA ATCTTGTTATATAACGATGAGATGACAATCAAGTCAAGTTTACTTCCCTTCTTTGACTCTGGTAGCTACTGTACATAGCC CAACATTAACTCATCATTTTTGTATGAGATTGCAGGTTTAGTTTCTCAACCATGTTCTTTGCGCATAGTAAGTCCACAGT TCATGTCATATGATAGGTACTTAGCGAGTTAGTTAGTAGGGCCTACTAACTAACTCCCTAAGTACCTATCATAATATTTA TAAAACATACCATAAAGTGTATCCTGGTAAGTAACTAGACAGAAACCAGATTTCTCATTGTTTCAGGAGAAAACACAGTT AGTACACTTGGTCGTGTTGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACAGCAAGCTTGAC ATCAATTCTGACTGTGCAACAGCTGTCCTCGCCCATAACAGGAATTGACACTTTGATATCCAGCAACCTACGTGTAGGGT TCCAAGTAGGATCATTTGCTGAAAATTACCTGAACGAGGAACTCAACATTGCAAAACATAGACTCGTTCCACTTGGCTCA CCAGAAGAATATGTTATTGCTCTTGAGAAGGGAATCGTTGCAGCAGTGGTAGATGAACGACCCTATGTTGAACTCTTCCT GTCAAACCACTGCAAATTCTCAATTAGGGGCCAAGAGTTCACCAAAGGTGGATGGGGATTTGTGAGTATCTTTAATTTAC TCAAAATTACTTGAATGCAGCTTTCTTAGGATGGAGAATCTAGGAATATACCAGGGCACAAATTGCCAGTGCAGAAAAAC AAAACATTACAGTAGGTGTGTATGGGACGTCAAATATCACAAGTTGAGTTGAATTTTCAATAAAGAAAACTGTCATGCTA GTTTATTTGAAACACTAGATACTATTTTGATCGTTCAATACTTCCTCAACTGCAATTTGTGTGTACATATAAAACATTAT GTTACTTGTTGTCATCATTAATTGATGAAGTTCATAATTTTTAGTTGAAGCTAGGCCCCTTAATTTCTTGAGTTTCTTTT CTTGGCAGGCATTTCCGAGGGATTCTCCTTTAGCAATTGATATGTCAACTGCCATTCTGAGTCTATCTGAGAATGGTGAA CTTAGGAGGATCCGTGAAAAGTGGCTTTCGGAAAAGGCTTGTGGTTTTCGTAATAATGAGGATGAGCAGCTTCAATTACA TAGCTTTCGGGGCTTGTTTCTGATCTGTGGCATAACATGTTTCCTGGCGCTTCTTATCTACTTCTTTTCAATAGTACGCC AATTCAGTCAAAACACTCCTCACAAAGACAGATCACGCATCCAGACTTTTCTAAATTTTGTTGATGAAAAAGAAGACATA TCACACAACCAATTAAAAAGAAAAGTTGAGGATATTTCATCAGATGCTTATTCCAGAGAAAGTCATTTGAGGAGCATAGA TCAGAGGGCACAAATGGATAAATCCCAAGAGGCTCCTTTGGCTTGACTCAGTTATATATAGGTTGTTCTTGTTGAAATTT AAATCTAAGTCGTTAAGTGATAGCATTGTTGTTGTGATATCAGGTGGGATTTATTTACTCCACGAGTAAGTCAAAAAACT TACTCCAAATCTTAGCCATCAATTTAATTAAAAACAAACGGTTGAGATTTTAATTTAAAACCAATCACGTGCCTCACTTC ACGTTTATTCTTT
CDS sequence (LotjaGi1g1v0001000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGATACTGTAGCTATAATTGGTCCACAAAATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCA AGTTCCTCTGCTATCTTTCACGGCTTTGGATCCCACCCTCACACCTCTTCAGTGTCCTTATTTTGTCCAAACTGCACCCA GTGACCTGTTTCAGATGACTGCAGTTGCTGACGTGATAAGTTATTTTGGTTGGAGGCAGGTCATTGCAGTTTATAGCGAT GATGATCAGAGTCGAAACGGGGTAGCTGTCTTGGGGGACAAACTTGCTCTCAGACGCTGTCAATTGTCTTACAAAGCAGC ACTGCCCCCGGATCCAACCGCCACTGCAGGTCATGTTACTGATCAATTGCTCAAGATAAGAAGCATGGAAGCTCGAATAA TTGTTGTGCACACCTACGCCATTACAGGTGCCTTGGTTTTCGACATGGCTCAAAAACTAGGGATGATGAGCAAAGGCTAT GTCTGGATAGCTACTGCTTGGTTATCAACTGTTTTAGATTCAACTTCACCTTCATCGCTTCCTTTAAATACTTCTAACTC AATTCAAGGCGTTCTTACACTTCGCCCTCACACCCCTCAGTCAAGAAAGAAGCAGGCATTTATCTCGAGGTGGAACCACA TAAGTAATGGCTCAATTGGGTTAAATCCATATGGCCTGTATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAA TTATTTTTTGATCAGAATCAAACCATTTCCTTCTCTAATAATACAAATTTAAGTGGCACCAGGGAAGAGACTACTCTGAA TCTTGGTGCTCTGCACGTTTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCGCATTAATATGACTGGGTTGACAG GACCTATTCAATTTGTTTCAGACAGATCTCCTTTACATCCATCATATGACATCCTTAATGTACTTGCTACTGGTTATAGG AGAATTGGATACTGGTCTAATTATTCAGGGCTCTCTGTAATATCCCCTGAGAAACTTCACACTAAGCCTGCCAATCGTTC AATTTCGAACCAGCGTCTACACCGTGTCATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGGTGGGTTTTCCCAAATA ATGGAAGGCAACTCAGAATTGGAGTTCCCAACAGAGTTAGTTATGGGGACATGGTGTCACAAACAAATGGCACCACTGCA GTTCAAGGATATTGCATAGATATATTCTTGGCCGCCATAAAATTGCTCCCATATGCATTTCAATATAAGTTTGTTCTGTT TGGAGATGGACATAAGAACCCGAGCTACTATGATCTTGTCAATATGATTACTTCTGATTCTTTTGATGCTGTTGTGGGTG ACATTGCTATTGTCACTAGCCGGACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGTTTAGTTGTGGTTGCT CCGGTGAAAAAGTTGAAGACAAGTGCTTGGGCTTTCTTGAGACCGTTTACTCCACAGATGTGGGGTGTCACTGCACTTTT TCTCCTTCTTGTTGGAATAGTGGTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCTCCAAAGAAACAGA TGGTTACGATTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCATAGTAAGTCCACAGTTCATGTCATATGA
Protein sequence (LotjaGi1g1v0001000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDTVAIIGPQNSVMAHVLSHLANELQVPLLSFTALDPTLTPLQCPYFVQTAPSDLFQMTAVADVISYFGWRQVIAVYSD DDQSRNGVAVLGDKLALRRCQLSYKAALPPDPTATAGHVTDQLLKIRSMEARIIVVHTYAITGALVFDMAQKLGMMSKGY VWIATAWLSTVLDSTSPSSLPLNTSNSIQGVLTLRPHTPQSRKKQAFISRWNHISNGSIGLNPYGLYAYDSVWMIAHALK LFFDQNQTISFSNNTNLSGTREETTLNLGALHVFDGGKQLLDNILRINMTGLTGPIQFVSDRSPLHPSYDILNVLATGYR RIGYWSNYSGLSVISPEKLHTKPANRSISNQRLHRVIWPGNTTEKPRGWVFPNNGRQLRIGVPNRVSYGDMVSQTNGTTA VQGYCIDIFLAAIKLLPYAFQYKFVLFGDGHKNPSYYDLVNMITSDSFDAVVGDIAIVTSRTKIVDFTQPFIESGLVVVA PVKKLKTSAWAFLRPFTPQMWGVTALFLLLVGIVVWILEHRTNDEFRGPPKKQMVTILWFSFSTMFFAHSKSTVHVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 499 | 499 | - | – | |
| PANTHER | 2 | 555 | 554 | 2.3E-268 | – | |
| PANTHER | 2 | 555 | 554 | 2.3E-268 | – | |
| Gene3D | 3 | 307 | 305 | 3.2E-72 | – | |
| CDD | 3 | 334 | 332 | 1.24132E-100 | – | |
| Pfam | 4 | 314 | 311 | 3.8E-67 | ||
| SUPERFAMILY | 4 | 370 | 367 | 2.86E-67 | ||
| PRINTS | 7 | 33 | 27 | 1.7E-9 | ||
| PRINTS | 39 | 58 | 20 | 1.7E-9 | ||
| Gene3D | 54 | 331 | 278 | 3.2E-72 | – | |
| PRINTS | 58 | 74 | 17 | 1.7E-9 | ||
| PRINTS | 74 | 91 | 18 | 1.7E-9 | ||
| SUPERFAMILY | 356 | 502 | 147 | 7.28E-23 | – | |
| SMART | 379 | 542 | 164 | 4.1E-5 | ||
| Pfam | 393 | 480 | 88 | 2.0E-10 | ||
| Gene3D | 401 | 474 | 74 | 9.0E-31 | – | |
| Gene3D | 475 | 484 | 10 | 9.0E-31 | – | |
| Gene3D | 485 | 547 | 63 | 9.0E-31 | – | |
| TMHMM | 496 | 518 | 23 | - | – | |
| Pfam | 499 | 552 | 54 | 2.5E-8 | ||
| Phobius | 500 | 518 | 19 | - | – | |
| Phobius | 519 | 557 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | G protein-coupled receptor activity | Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. | ||
| Molecular function | Ionotropic glutamate receptor activity | Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. | ||
| Biological process | G protein-coupled receptor signaling pathway | A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576). | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0001000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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