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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0024800 |
| Transcript ID | LotjaGi1g1v0024800.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | EH domain-containing protein 1; TAIR: AT3G20290.1 EPS15 homology domain 1; Swiss-Prot: sp|Q94CF0|EHD1_ARATH EH domain-containing protein 1; TrEMBL-Plants: tr|G7K8N7|G7K8N7_MEDTR Calcium-binding EF hand protein; Found in the gene: LotjaGi1g1v0024800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2962869..2968265) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTTCGACCCGATCCCGTTCGGTTCGTGCTCCAAAGAGTACCAGTCAATCTACCAGGACTGGTTCAATTTTGCTGA TTCAGGTAACTTGCTCTTCTCCATTGAGATTCCAATGGTTTTTTTGGAACGATTGTGTCACTGTGCATGGTTTTTTTTCA GATAACGATGGTCGCATTACTGGGAATGATGCCACCAAGTTTTTCGCCATGTCCAACTTGTCTCGCCAAGATCTTAAGCA GGTTTCTTTATTATCATTACTGTTGTTGTTACCATGATCATTGCTTTGGAGTGATGAGAAAACGATTAATATAGACGGGG ATTGTGAATTTGTTTCTGATGGTTCAGCATTTGTGGGATAATTACCTTGTATGACTAGTGTCTTAGTAACTAGTAAGTGG GTTGGGAAGAGTGAGTTGAGAATGGAGGGAGTTTGAAACTGGGGGTGCATGAATGATCAAAGATTTGGTTGTTTGGTACT TTGGTTAGGGAATAAAGAGGAAAGTAATGAAAATTGGTCATTAACACATTATTGGCATGCCCTGCTTAATTTTGGTATGT TTTCCTCATGAAGAAATGAAGTGAGGTGATATTGAAGTTGACTTGCAAATTGCAATGCAAAGAGAAATGACTGAGATGAT AATGTGGTTTAATAAGTGTTTGAATTTGTTTTCTCCGCGGATATGTTGTATTTGTGTTCATCGGTTATTTCACTCCAAAC AATAAATAACAGTATGTTGCTGATTTTCAAATTTTATCACTTTTTTACCTTTTCCTTCTAGCATGCACTGGTGAACTTTG AACTTCCTGTCATTCGTATCTTAAATTTCTCTCCATTTTTGCTTTGCTAACTTGGTCTTGAATCGGGTTGAACTTTGATT TGTGGAAATGCCTCATAGGTTATTCAGCAGCTGCATTTTTTTATTCTTTGCAAGCAAGATTTAAATCTAATCCATTATTG CTATAGTTTTACATTGTCACTTGTCAGTGAGGCAGTGTCAACTTTGCTGTCAGTGGGCCATAGTGCCAACTATTTAAAAT AACTTTTAAACTCTATTTTGCAAGTGACATATTTTAATTCCTCCTATGGTGTGGCACTTAACTGTTTTATGGTAATATTT GATCTTAGACTGGTAGTGGATTCAATTTGAACTCTTACACTTGACTCAAGTTGAAGTTGGCTTTGATTTAATTTGATCTC CATCAATTGGAATGGTTTGGGCATTTGATGATTGAGTTGTTTATATAAGTTGTACTTATACCCTTTGACTTATTCCTTTA ACTAAATTGTTTCTTTGTTTATTACTATTACCAAAACAAGGTGTGGGCTATTGCAGATTCAAGACGACAAGGATATCTTG GTTTCCAAGAGTTTATAATTGCTATGCAGGTACAAATATATTATCCTTTATTGGCGTTTAATGCTAACAAATTTCCAGAA TCTTACACATTTGAAATGTAGGTAGTTTCTTTGGCACAATCTGGGCACCCTGTAACACATGATCTGCTGAGTAGTGATGG TAAGTTATGTATGTTTAGGTTTGTCTTTATTGTTTTGTTCAAATAACTTTCTATAATTGTATTAATATGTTTTGAAATTC ACATTCTTGGTGCTGTCTACATTTGTGGACTGTGAATTTCTATCATATAAGATTTATCTAATGAAAGCTTAACTTTTATT TCAGTTGATTTGAAAAATCTGAAACCTCCCACAATGGAGGGTTTGGATGCATTACTAGCTGTAAGTATTTCTTTTTAATG TTTTTTATTTACGGTGCTAATATTTTTATGTTTATTTAATGAAAGTGCTTACTTGGCTGTGTTTATCCAGAAGAAAAAGC ATAAACAAAAAGATGTAGATGTAAATGGTAATTTATTTCTTATTTTAGTGAATACGGGCATTCTTATTGATTTTGTTTCT CTCTTCAAAATCCAAGTTCAATAATCAACAAAAATGCAGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTT TCTTCGAAGTCAACCAAAAAGGCAAGCATTCTTTTACTGTGTCTTTGATATTTCTCTGTGCATTATTTCTGCTAGAGAGC ATACTGAATGTTCATTTCAAATTTTCATCTAATGTCAGGCTTGGGTCATTCTTTACCTGCTTTATTATGTTCTATTTCAT TTTGTTTCATCACGGTCTTGAATAGTATCCCTGGGAGGTTTTGGTTTAGTTACTCTATCTCTTTTCTTCTTTTATAAGAT GACGATACAAATAATGTTTAGCCAGTTATTAGGGCCTGAAACCAACATTATCTTTTGACTTGTATGTAACTTGTAAGTGT CTAAGTGAAATAGACCTAAGAGTGTGCTTGTCTGCCTGATACTCCACAACAAAATATGAATATTTCAGTTTTGAACTGTT ATCAAATTTGTTCTTTTTGGACTAACAAAATATGCATTTTTATCTTGTATCTATCTAATTTACTTATTGATAGTACATAA ATCAAGTTGGCAGCAGCACCCTAAAGTCTCTTCTGTATATATGTTATCTAAGCCTTTTTATCTGCGTGCATTGCTGCTTC TTTGCAATTTCCTGTACTTAAAACTTGTCCAATACATTCTAATAGGGTTTTCACTTGAACTTTTGGCGCATATTTCCACA GGTTCCCCTTTCCTCCGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAATTGAAGCCATTAGAAGTTA CTTACCGTTTTAATGATTTTGTATCCCCATTATTGGTCAGTAAGTGACCTTGTTCAGAAATAACTATCTACTCTAGATTT CATATTTTTTCTTTCTTCAGCTCTTCAGCCATGTTACTTTTTTTTAATATCGACAAAGATATATAGTTGGGTCTTTAGTT GATTGCAACTCTTTATATATTGCAGACAAATAGTGATTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAA CCGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGCAAGTAATTATCCTTTCTCTATATCCTTTGT GTGCATATGTTTGGCACTGCTTATAAGTGTATTATAAATATTTGTTTCTGACTTCTTTTTCATAACTGTCTATAGGAGCA CATATTGGACCTGAGCCTACAACTGATAGGTTTGTTGTTGTTATGGTATGTGCCAGCCGAACCAATTTATCTCCCACGAC TCTCTAATACATTGAAAATTTTCTTGATTTTAAATTTCTAAATTGGGACTTCAAACTCCTAGCAAGCTTCAACATCTTCA TGGAAGTGCTAGAATTTCTCAATGCACTTAGTAGTTTATCCTGTAGCATTAGTGCCAAGTTTAGACAATTTGAATTCTTG GAGCTTTTTCAATAGATCTATTACTCTATCTTGTAGTCTTCTTGGAAAATGAGTTATTGCATCAGTTTTAACTAGCAAAT GGTACTGCTGTACAGTCTGGACCTGATGAGAGAAGTGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAG TGGTCTTACAACTTTTGGCACAGCCTTTTTGTCAAAGTTTGAGTGTTCACAAATGCCTCATCCTGTAAGTTGCTCAAGAG CCATTGAAAAAGTTCACAAGATTCTCCTTTTGTAGCATTTGTACTTAACTATTTTTTATTCGTCCAAAGCTACTGGAGCA CATTACATTTGTGGACAGTCCTGGAGTTCTATCTGGAGAAAAGCAACGGACACAAAGAGCATATGACTTTACGGGTGTAA CGTCTTGGTTTGCTTCTAAGTGTGATTTGATACTCCTTCTCTTTGATCCTCACAAACTTGATATCAGTGATGAGTTCAAT CGTGTGATATCATCCTTACGGGGGCATGATGATAAAATTCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACTCAACA AGTAAGAGCTTGTGTAGTTAAACTTCTATTTGTTTATTTAATGTGGTCAGGGTAAACATAACCTATATTTGGCCCCATTT TGCAGCTGATGAGGGTTTATGGAGCTTTAATGTGGTCACTTGGGAAGGTGCTGAATACACCTGAAGTCAGTCGTGTGTAT ATTGGGTATGTCACTTCATGTATGCACTCCTCTGTCAATGTTTACGTGTTTGTTTTTGACATAGAGAATTCGACAGAGAC TACTTTGTTTCTACATTCCTAAGTTTTAGGAGTTTCTCTTTATGTTTTAGGGTGGAAGACTTTTTTACTCCTTTTACTAT GTTTTATTCAATTTAGATGTAATGTAACTGTCTTTCTTTTCCTTATGTATGGGGTTACCATGTGCTTTTTTGAGCTCATT TAACTTTCTCTTGGCAGCTCCTTCAACGACAAACCTGTAAATGATGCTGTCAGTGGTCCAATTGGTAAGGAACTCTTTGA AAAAGAACAGGAAGACCTTCTTTCAGATCTGAAAGATATACCAAAAGCCGCTTGTGATCGAAGAGTGAGTTTATGCATTT AAATGTATTTCGCTTATCATAATAAATTAATAATAGTTCACTAAAATGAGATTACGTATACTTTCATGTTGATGTTAAAA AGTAAATTATGTCCATGTTTGGTTTCATTATCTAGTTAAGTGCTAGTTAAGATTGATGTGATGAAATTACAAGGATGTCA GTCTTTCAATTTGGTTGTTTTTCTTTTTTTGTGGAAATAAAAGAAAATAATGGCCATGTTTGGTTTCATTATCTAGTTAG TGCTGGTTATATGTTTATTTAATTAAGAATTTGCTTCTTTTCATAGTTATATCATTTGTACACATTGGCTATTGTAGATC AATGAATTTGTAAAACGAGCACGAGCAGCCAAGATTCACGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCAAT GATGGGCAAAGCTAAAGCACAGCAAAAGCTCATTGATAATTTGGCAGGTGAATTTGGAAAGGTACCATTCCAACCCTTTT ACCCTTCCCTGGACTCTTCCACTGGGGAGCTTTATAACATCAATTTAGTCTACAGTTGAAGCTAAAGACAAATTCAATTC TGGTGATCATTTCTTCACAGACCTAATTATTTGAAATGAGAAGCGAATTCAAACATTCTATTATTAGTCTATTACTTTTT ATGAATCTGACTGTATATCCTTTCTGCTGACCTGCACGTCTCTTTGGATAACACTTAAAATGCATGTACTTGACCATTAA CTTTGAAACAGGTACAAAGAGAGTTCCATTTGCCTCCTGGTGACTTCCCAAATCTGGAGCATTTCAGGGAGGTCTTGGGT GGTTACAATTTTGACAAGTTTGAGAAATTGAAACCAAAAATGGTACAAGCAGTTGATGACATGCTAGCTTACGACATTCC TAACCTCTTGAAGAACTTCAGGAATCCCTATGACTAA
CDS sequence (LotjaGi1g1v0024800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTCGACCCGATCCCGTTCGGTTCGTGCTCCAAAGAGTACCAGTCAATCTACCAGGACTGGTTCAATTTTGCTGA TTCAGATAACGATGGTCGCATTACTGGGAATGATGCCACCAAGTTTTTCGCCATGTCCAACTTGTCTCGCCAAGATCTTA AGCAGGTGTGGGCTATTGCAGATTCAAGACGACAAGGATATCTTGGTTTCCAAGAGTTTATAATTGCTATGCAGGTAGTT TCTTTGGCACAATCTGGGCACCCTGTAACACATGATCTGCTGAGTAGTGATGTTGATTTGAAAAATCTGAAACCTCCCAC AATGGAGGGTTTGGATGCATTACTAGCTAAGAAAAAGCATAAACAAAAAGATGTAGATGTAAATGGTAGTTCTCAATTGC AGCCATCACCATCAAGTAATTGGTTTTCTTCGAAGTCAACCAAAAAGGTTCCCCTTTCCTCCGTGACATCAATAATTGAC GGCTTGAAGAGACTCTACATTCAGAAATTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTATT GACAAATAGTGATTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACCGGTAAAACAACATTTATCAAAC ATCTGCTTAAAAGAGCACATATTGGACCTGAGCCTACAACTGATAGGTTTGTTGTTGTTATGTCTGGACCTGATGAGAGA AGTGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCCTTTTTGTC AAAGTTTGAGTGTTCACAAATGCCTCATCCTCTACTGGAGCACATTACATTTGTGGACAGTCCTGGAGTTCTATCTGGAG AAAAGCAACGGACACAAAGAGCATATGACTTTACGGGTGTAACGTCTTGGTTTGCTTCTAAGTGTGATTTGATACTCCTT CTCTTTGATCCTCACAAACTTGATATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGATAAAAT TCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAACTGATGAGGGTTTATGGAGCTTTAATGTGGTCACTTG GGAAGGTGCTGAATACACCTGAAGTCAGTCGTGTGTATATTGGCTCCTTCAACGACAAACCTGTAAATGATGCTGTCAGT GGTCCAATTGGTAAGGAACTCTTTGAAAAAGAACAGGAAGACCTTCTTTCAGATCTGAAAGATATACCAAAAGCCGCTTG TGATCGAAGAATCAATGAATTTGTAAAACGAGCACGAGCAGCCAAGATTCACGCTTACATTATCAGTCATCTTAAAAAGG AGATGCCTGCAATGATGGGCAAAGCTAAAGCACAGCAAAAGCTCATTGATAATTTGGCAGGTGAATTTGGAAAGGTACAA AGAGAGTTCCATTTGCCTCCTGGTGACTTCCCAAATCTGGAGCATTTCAGGGAGGTCTTGGGTGGTTACAATTTTGACAA GTTTGAGAAATTGAAACCAAAAATGGTACAAGCAGTTGATGACATGCTAGCTTACGACATTCCTAACCTCTTGAAGAACT TCAGGAATCCCTATGACTAA
Protein sequence (LotjaGi1g1v0024800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFDPIPFGSCSKEYQSIYQDWFNFADSDNDGRITGNDATKFFAMSNLSRQDLKQVWAIADSRRQGYLGFQEFIIAMQVV SLAQSGHPVTHDLLSSDVDLKNLKPPTMEGLDALLAKKKHKQKDVDVNGSSQLQPSPSSNWFSSKSTKKVPLSSVTSIID GLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKRAHIGPEPTTDRFVVVMSGPDER SVPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFASKCDLILL LFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPVNDAVS GPIGKELFEKEQEDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQKLIDNLAGEFGKVQ REFHLPPGDFPNLEHFREVLGGYNFDKFEKLKPKMVQAVDDMLAYDIPNLLKNFRNPYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 11 | 89 | 79 | 1.55E-20 | ||
| Gene3D | 11 | 108 | 98 | 8.5E-25 | – | |
| SMART | 12 | 103 | 92 | 1.6E-10 | ||
| ProSiteProfiles | 14 | 38 | 25 | 5.168 | ||
| ProSiteProfiles | 15 | 93 | 79 | 12.828 | ||
| CDD | 19 | 85 | 67 | 6.05256E-22 | ||
| Pfam | 21 | 80 | 60 | 9.1E-8 | ||
| ProSiteProfiles | 48 | 83 | 36 | 9.576 | ||
| PANTHER | 102 | 539 | 438 | 2.2E-277 | – | |
| PANTHER | 102 | 539 | 438 | 2.2E-277 | – | |
| MobiDBLite | 125 | 146 | 22 | - | – | |
| MobiDBLite | 127 | 146 | 20 | - | – | |
| Gene3D | 161 | 523 | 363 | 1.1E-149 | – | |
| Pfam | 161 | 193 | 33 | 2.9E-15 | ||
| SUPERFAMILY | 188 | 461 | 274 | 1.93E-29 | ||
| ProSiteProfiles | 192 | 424 | 233 | 24.964 | ||
| CDD | 197 | 437 | 241 | 2.56197E-142 | – | |
| Gene3D | 198 | 422 | 225 | 1.1E-149 | – | |
| Pfam | 198 | 353 | 156 | 1.4E-11 | ||
| Pfam | 429 | 531 | 103 | 3.2E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0024800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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