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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0134900 |
| Transcript ID | LotjaGi1g1v0134900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JH21|I1JH21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21747835..21752816) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCTCACATCCAGTGCAGTTGCATATCAAAGGCAATCATGTAAGACATTTTCTTCATTTAAACTTTCAGAATTAGTT TGATTTTATGTCAAGATGAATTGCTTGAGATTTTGATCTTTGTTGAGTTTCAACTTTCAGGTGGTTATGGACAATGGCAT ACTTCAAGTGCAATTTTCCAATCCTGGTGGATTCATCACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGTTC TTAATGATAGTAATAACAGAGGGTATACGTGCATTTTCTTAATGATTTTTTCTCACTCTTCATTCAACTAAACTTATGAT TACCTCCATTAATGGATTCACAGGTATTGGGACCTTGTTTGGAGTAAAGCAGGAAGTACAGGAACAACAGGAACACAAGA GCGGTATGTGATAATCGCCTAAAAGAATGTTACAATTGTTTTTTGATTGAGCTAAATGTTACTTGAGATTTTTCACTCTA AACCAATACTTGTGAACCATGGTTGTGATTGTGTCTTAGCATGTTTGCATCAGCTTCTTTTTTCTCACGAATCTAGCACC TAGAAGGCGGATTCAATTGTAGAAGAGTTTCTAAACATGCACTAATGGTTGTAACAAGCTTGTTTATGATTAATTGGCCC CTATGCAGGATCGTAGGAAGAAGATTTAGTGTTATTGTGGAAAGTGAGGAGCTGGTTGAAATCTCATTTACAAAAATGTG GGATCCATCTCAGAAGGGAAACCTGTCACCTCTAAATATCGATGAGAGGTATCACTACATATGTTGCCTAATAAGATTAG AACTAATGTCATTCATAGCATGTTTGGATCAATTTATTTTTTCGCAGAATCAGTGCTACTAACAAAGCTTTTCTCTGGGA TTAATTTTTTTCAGAATAAATTGTCGAAGAATTTCTAAACATGCGGTAAATATTTTGAAAAATAAGATGATGACTATTCA GCAAAATGTTTATGCAGGTATGTGATGCTTCGTAATTCCTCAGGCTTCTACTCCTATGCCATCTTTGAACACCTAAAGGA GTGGCCTGCTTTCAACATACCTCAAATCAGGATTGTCTATAAGCTTCGAAAAGACAAGTATATGGACTTTCCCTTGTGAA ATTCATAAAAACAAAGTGCCCTTCATTTCATTGCCTTAAAGCAGATATTTGACAAAAATCATGTAAATTATTAGCTTGAT GCAGGGCTAATTTTTACAAGTTGTTATATTATGCAGGTTCCATTACATGGCTGTGGAGGATAATAGACAGAGATTCATGC CTCTTCCTGATGATAGATCACCCGGAAGAGGAGAAGAACTAGTTCCCCCAGAAGCAGTTTTGCTTGTCGATCCTGTTGAG CCAGAGTTCAAGGGAGAGGTACTTCTTTTATGTAAAATAAAAAGGCATTAAAAATAATTTGCATAGTTGTTGACTTGCAT GTAATTTTGGGATTTCATCGGTTGTATTTGGTTCTATTTGCCTCAACGCAAACAGGAAAACACACATCCCAACGTATAGA AAAAGTAAGGTTTTACCACGCTGCGTTCAATGTGTTTTGGCTTTGAATTTAACAAAAATCTAAATACACATTTGATCTAA AGAATTGTGATGTGTAATGAGCTAATATACAGACACATTTTAGCCTTTGCATGTGAACCAAGGTAAGTAATAATAAAATT GTCTTATACATATTGGAAGATTGAAGGACTAAATTGATGTTAGTTTGTATTATTGAGAGAGCAAAATAATATTATCTTTG TAGAACTGAGAAACTGAGTTAAAATGTGCTATTTGACTGATTAAGGTGGATGACAAATATCAATACTCAAGTGAAAACAA AGATCTGAAGGTTCATGGATGGATAAGTTCAGAATCCAAAACTGATCCGGCCATGGGGTTCTGGGTAATCATACCCAGCA ATGAGTTCAGATCAGGTGGCCTTGTTAAACAGAACCTGACTTCCCATGTTGGCCCCATCAGCCTCTCAGTATGTACTCTT CTTTATAAAGCATCTCCCCACCTTGCTCGTAGTATCTTTGAGTGCATGTTTAGAAATCTTTCTACAAAATCCTAAAGTCA TAACCAATCATGGGGAGAAGTTTTTGTCATCACTTCTTAGTTCCATAATTGACTATGAGGAAAGAGAAATTATTTCAAAC ATGCTATTTGTAGCATTCTTGATGATTTCTTAATAATTTGGATTCTCTATTGTCAACGAGAGTTTGAGCTGTTTGATCAA GATTAGACGGCTACAATCTTTAGCTACCAACTGATCTTGATGATATTTATGGGCCGATCTTTAATCAAACAGTGCAGATT TTTTTATTGTAGATTTTTGACTGCGTGAATGCAGCATTGCCCTCACCGCAAGGAATCCAAATCCATAATTTCAATGATGC AAATCTATTACAGTTATTGACTTATTTCATGTTGATCAACTAAAAACAAATAGCTTGCAACGTTTTTGTTTGTGTCAGAT GTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAGCCAAATGAGGCATGGAAGAAAGTTTTTGGGC CAGCTTTTGTCTATCTCAACACTTTGTTGGATGGTGAAGACCCATTGAAGCTATGTGAGGATGCTAAAGATCAGGTTTTA TTTTCATTATTAACCTTATGTTATGGAGAATTTTAGTTTCATAGTATTACATAGAATTAGCACTAAGTACTAACTTAGAT CACCAAAAATGACATCTAGATGAACAAGGAAGCTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAAAGT CTAGCCAACGGGGCAGTGTGTATGGCACATTACTAGTTCGAGACAGGTAAAGCTAAAGTACCGGTATTAGCATGTTTAAA TCAACTTTTTTTTCATTAGAATCAATTATAAAACCCAGAATCACTCACATGAGCTTTTTCTCGGAATGAACTACTATATG TTGCCAAAATGAAAGTGCAGCTATTTAAGCACTCAAAATGAAAATTTTCAGGTACCTAGGTGACGAGAGCATATTAGCAC AAGGTGCATACATAGGACTGGCTCCACCAGGAGAAGCTGGGTCCTGGCAAAGAGAATGCAAGGTTTAGAGCATATATGTG TTAAATAACCCAAATTTGAGTTCTTTTTCTCTATTGTTCTGTCCCTAGTAATGAAACACTTTAGAAAGCAATTAGCTATT TTATCTAACGATGCCTTTTTGGTCAGGGATACCAATTTTGGAGTAGAACAAACAAGGAAGGCTACTTCTCAATCAATAAC ATACGTAGTGGGGACTACAATCTCTACGCATGGGTTCCAGGTTTCATAGGAGAGTATTGGAATAATGTTGTTCTCACAAT AACCCCAGGTTGCTTTACTTTTATTTATTGGGTCAGAGGACACGGCTAATGTTTTATTTTTTTATATTTAAACCGCACCG TATTTGGTCACCCTTCGCATGACTATTCTGAATTTGAGATTTAGTCACAGTTAAGCATCTTCACCCATTCTCGGGGTGTA TTCCGCGAGGATCAAACCTAGAGCTCTTCTCACAGTCAGTCAGCATTGCCAACTGAACTACCCCTCTCACGGCTAATATT GACATAGGCACTAATTTAGGGTTCTTTTATAAAATACACAAATAAGAAAGTATACACCTTTCATTTCATTTAAAATATAC TCTAATCTTTACCTGTTTATGGGTGAATATAATTTGAGTACATGGTTGTTAACTACTAGAAGAGAACAGGTAGTGAAATA AACATTGGTGACATTATTTTTGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCAGC TGAGTTCTATGTTCCTGATCCTAATCCAAAGTACATAAACAAGCTTTATGTCAACCATCCAGATAAGTGAGTTCCTCCTT AAATAAATAATAAATTAAAAATCCGTTTGAATGCAAATCAAAGAGCATTTATTCATTTATTTGAGCTTATAAAGTGCTTC TTCTAGTAGATAAATTCCAATAAGTTCCTGTCAAACCTCGTTCACTTCTTACAGGTTTAGGCAGTATGGCTTGTGGGAAA GATATGCAGACCTATACCCAAATGAAGATTTGATTTATACAGTTGGTGTCAGTGACTACACAAAAGATTGGTTCTATGCA CAAGTCACCAGGTACACCCTTTTTAACAGCATAGAGTTGCTTCTTTTAAAAGTAACTACAAAGGTTCTAAATTGCGGTTT GCATTTATATCTCAGAATTGCAGATAATTGAACGCTACCCCTTTATACTGCGGCTGCAATTGCAAATTGCGGACCACAAC TTAAAATTCTGAGCACCTGTACTATGCATGAATAATTAAATTACTGCATCAATTACAGGAAACAAAGTGATGGAAGTTAC CAAGGAACCACATGGCAAATTAAGTTCAGCCTTGATAACGTGGACCCAAGTGGAATCTATAAATTGAGATTGGCGCTTGC AAGTGCAAATGTCTCAGAATTGCAGGTTTGGAACCGTGAAAAAAAAAATTGTTTCGCTACACCGTGAAAAACCATAAACT AAAATCAAATTAGACAATCGTAAAAGTTAAAGAAAATTGTTTCATTTCACCCCGTGTATCTAAACATGTAAAAAATTAAT AGTAACTTCTTTCACTTTTTATCAATACATTGTCTAATCCTATGATGGTTTTGGTTTGGACTTTGGAATTTGAAGGTTAG GGTGAATGATCCAAAACAAGATCCCTCACTATTCACTACAGGGGTTATTGGGAAGGACAATGCAATAGCTAGACATGGAA TTCATGGACTCTATTGGCTATTCAGCATTGATGTGCCAGGTCTTCTGCTAGTGAATGGTGTTAATACTGTATTTTTAACA CAGGCTTCAGCTAATGGCCCCTTGACCCTCTTCCAGGGGATAATGTATGACTACATTAGATTAGAAGGCCCCAACCCTTT GCTTACTATTAAAAGAAATTAA
CDS sequence (LotjaGi1g1v0134900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCACATCCAGTGCAGTTGCATATCAAAGGCAATCATGTGGTTATGGACAATGGCATACTTCAAGTGCAATTTTC CAATCCTGGTGGATTCATCACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGTTCTTAATGATAGTAATAACA GAGGGTATTGGGACCTTGTTTGGAGTAAAGCAGGAAGTACAGGAACAACAGGAACACAAGAGCGGATCGTAGGAAGAAGA TTTAGTGTTATTGTGGAAAGTGAGGAGCTGGTTGAAATCTCATTTACAAAAATGTGGGATCCATCTCAGAAGGGAAACCT GTCACCTCTAAATATCGATGAGAGGTATGTGATGCTTCGTAATTCCTCAGGCTTCTACTCCTATGCCATCTTTGAACACC TAAAGGAGTGGCCTGCTTTCAACATACCTCAAATCAGGATTGTCTATAAGCTTCGAAAAGACAAGTTCCATTACATGGCT GTGGAGGATAATAGACAGAGATTCATGCCTCTTCCTGATGATAGATCACCCGGAAGAGGAGAAGAACTAGTTCCCCCAGA AGCAGTTTTGCTTGTCGATCCTGTTGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAATATCAATACTCAAGTGAAAACA AAGATCTGAAGGTTCATGGATGGATAAGTTCAGAATCCAAAACTGATCCGGCCATGGGGTTCTGGGTAATCATACCCAGC AATGAGTTCAGATCAGGTGGCCTTGTTAAACAGAACCTGACTTCCCATGTTGGCCCCATCAGCCTCTCAATGTTTCTTAG TGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAGCCAAATGAGGCATGGAAGAAAGTTTTTGGGCCAGCTTTTG TCTATCTCAACACTTTGTTGGATGGTGAAGACCCATTGAAGCTATGTGAGGATGCTAAAGATCAGATGAACAAGGAAGCT CAAAGTTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAAAGTCTAGCCAACGGGGCAGTGTGTATGGCACATTACT AGTTCGAGACAGGTACCTAGGTGACGAGAGCATATTAGCACAAGGTGCATACATAGGACTGGCTCCACCAGGAGAAGCTG GGTCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGTAGAACAAACAAGGAAGGCTACTTCTCAATCAATAACATA CGTAGTGGGGACTACAATCTCTACGCATGGGTTCCAGGTTTCATAGGAGAGTATTGGAATAATGTTGTTCTCACAATAAC CCCAGGTTGTGAAATAAACATTGGTGACATTATTTTTGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGCATTC CTGATCGCTCTGCAGCTGAGTTCTATGTTCCTGATCCTAATCCAAAGTACATAAACAAGCTTTATGTCAACCATCCAGAT AAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGACCTATACCCAAATGAAGATTTGATTTATACAGTTGGTGTCAG TGACTACACAAAAGATTGGTTCTATGCACAAGTCACCAGGAAACAAAGTGATGGAAGTTACCAAGGAACCACATGGCAAA TTAAGTTCAGCCTTGATAACGTGGACCCAAGTGGAATCTATAAATTGAGATTGGCGCTTGCAAGTGCAAATGTCTCAGAA TTGCAGGTTAGGGTGAATGATCCAAAACAAGATCCCTCACTATTCACTACAGGGGTTATTGGGAAGGACAATGCAATAGC TAGACATGGAATTCATGGACTCTATTGGCTATTCAGCATTGATGTGCCAGGTCTTCTGCTAGTGAATGGTGTTAATACTG TATTTTTAACACAGGCTTCAGCTAATGGCCCCTTGACCCTCTTCCAGGGGATAATGTATGACTACATTAGATTAGAAGGC CCCAACCCTTTGCTTACTATTAAAAGAAATTAA
Protein sequence (LotjaGi1g1v0134900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSHPVQLHIKGNHVVMDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERIVGRR FSVIVESEELVEISFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMA VEDNRQRFMPLPDDRSPGRGEELVPPEAVLLVDPVEPEFKGEVDDKYQYSSENKDLKVHGWISSESKTDPAMGFWVIIPS NEFRSGGLVKQNLTSHVGPISLSMFLSAHYAGEDIVLKLQPNEAWKKVFGPAFVYLNTLLDGEDPLKLCEDAKDQMNKEA QSWPYDFPASEDFQKSSQRGSVYGTLLVRDRYLGDESILAQGAYIGLAPPGEAGSWQRECKGYQFWSRTNKEGYFSINNI RSGDYNLYAWVPGFIGEYWNNVVLTITPGCEINIGDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPD KFRQYGLWERYADLYPNEDLIYTVGVSDYTKDWFYAQVTRKQSDGSYQGTTWQIKFSLDNVDPSGIYKLRLALASANVSE LQVRVNDPKQDPSLFTTGVIGKDNAIARHGIHGLYWLFSIDVPGLLLVNGVNTVFLTQASANGPLTLFQGIMYDYIRLEG PNPLLTIKRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 642 | 642 | 0.0 | – | |
| PANTHER | 1 | 642 | 642 | 0.0 | – | |
| Pfam | 5 | 203 | 199 | 8.6E-85 | ||
| CDD | 12 | 298 | 287 | 1.69116E-78 | – | |
| SUPERFAMILY | 337 | 432 | 96 | 2.55E-8 | ||
| CDD | 338 | 437 | 100 | 1.07895E-33 | ||
| Pfam | 361 | 433 | 73 | 1.4E-23 | ||
| SUPERFAMILY | 444 | 639 | 196 | 4.68E-51 | ||
| Pfam | 447 | 638 | 192 | 1.0E-54 | ||
| CDD | 449 | 639 | 191 | 1.12636E-57 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi1g1v0134900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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