Domain Predictions — View

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PF14686

Source: Pfam

Description

Polysaccharide lyase family 4, domain II

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 18

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0234519.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rhamnogalacturonate lyase B-like [Cicer arietinum] gi\|502131870\|ref\|XP_004501130.1\|	Domains G3DSA:2.60.120.260 G3DSA:2.60.40.1120 IPR008979 IPR010325 IPR013784 IPR014766 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SignalP-noTM_EUK cd10316 cd10317 cd10320	24
Lj0g3v0234519.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi\|356507989\|ref\|XP_003522745.1\|	Domains G3DSA:2.60.120.260 G3DSA:2.60.40.1120 IPR008979 IPR010325 IPR013784 IPR014766 IPR029411 IPR029413 PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF1 SSF49452 SSF49785 cd10316 cd10317 cd10320	18
Lj0g3v0286339.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase [Medicago truncatula] gi\|357517183\|ref\|XP_003628880.1\|	Domains G3DSA:2.60.120.260 G3DSA:2.60.40.1120 IPR008979 IPR013784 IPR014766 IPR029411 IPR029413 PF14683 PF14686 PTHR32018 PTHR32018:SF7 SSF49452 SSF49785 cd10316	14
Lj0g3v0307599.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase [Medicago truncatula] gi\|357517173\|ref\|XP_003628875.1\|	Domains G3DSA:2.60.40.1120 IPR010325 IPR011013 IPR013784 IPR014766 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14686 PS51257 PTHR32018 PTHR32018:SF7 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF74650 SignalP-noTM_EUK TMhelix cd10316 cd10320	22
Lj0g3v0307599.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase [Medicago truncatula] gi\|357517173\|ref\|XP_003628875.1\|	Domains G3DSA:2.60.120.260 G3DSA:2.60.40.1120 IPR008979 IPR010325 IPR011013 IPR013784 IPR014766 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PS51257 PTHR32018 PTHR32018:SF7 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SSF74650 SignalP-noTM_EUK TMhelix cd10316 cd10317 cd10320	28
Lj1g3v0178890.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi\|356500777\|ref\|XP_003519207.1\|	Domains G3DSA:2.60.40.1120 IPR013784 IPR014766 IPR029413 PF14686 PTHR32018 SSF49452 cd10316	8
Lj1g3v1601160.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi\|356515683\|ref\|XP_003526528.1\|	Domains G3DSA:2.60.120.260 G3DSA:2.60.40.1120 IPR008979 IPR010325 IPR011013 IPR013784 IPR014766 IPR029411 IPR029413 PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF8 SSF49452 SSF49785 SSF74650 cd10316 cd10317 cd10320	20
Lj1g3v1601160.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi\|356515683\|ref\|XP_003526528.1\|	Domains G3DSA:2.60.40.1120 IPR010325 IPR011013 IPR013784 IPR014766 IPR029413 PF06045 PF14686 PTHR32018 PTHR32018:SF8 SSF49452 SSF74650 cd10316 cd10320	14
LotjaGi1g1v0134900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|A0A0R0L4I6\|A0A0R0L4I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900	Domains IPR010325 IPR013784 IPR029413 PF06045 PF14686 PTHR32018 PTHR32018:SF25 SSF49452 cd10316 cd10320	10
LotjaGi1g1v0134900.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|I1JH21\|I1JH21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900	Domains IPR008979 IPR010325 IPR013784 IPR029411 IPR029413 PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF25 SSF49452 SSF49785 cd10316 cd10317 cd10320	15
LotjaGi1g1v0415400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|K7KJ17\|K7KJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415400	Domains IPR008979 IPR010325 IPR013784 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF29 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SignalP-noTM cd10316 cd10317 cd10320	21
LotjaGi1g1v0415600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|I1JV26\|I1JV26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415600	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF12 SSF49452 SSF49785 SSF74650 cd10316 cd10317 cd10320	17
LotjaGi1g1v0415700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|K7KU45\|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF8 SSF49452 SSF49785 SSF74650 cd10316 cd10317 cd10320	17
LotjaGi1g1v0415700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|K7KU45\|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 PF06045 PF14683 PF14686 PTHR32018 PTHR32018:SF8 SSF49452 SSF49785 SSF74650 cd10316 cd10317 cd10320	17
LotjaGi2g1v0329700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|I1J4Y6\|I1J4Y6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0329700	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PS51257 PTHR32018 PTHR32018:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SSF74650 SignalP-TM cd10316 cd10317 cd10320	24
LotjaGi4g1v0172800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|K7MSC9\|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PS51257 PTHR32018 PTHR32018:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SSF74650 SignalP-noTM TMhelix cd10316 cd10317 cd10320	25
LotjaGi4g1v0172800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|K7MSC9\|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PS51257 PTHR32018 PTHR32018:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SSF74650 SignalP-noTM TMhelix cd10316 cd10317 cd10320	25
LotjaGi4g1v0173000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp\|Q8RJP2\|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr\|K7MSC9\|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173000	Domains IPR008979 IPR010325 IPR011013 IPR013784 IPR029411 IPR029413 NON_CYTOPLASMIC_DOMAIN PF06045 PF14683 PF14686 PS51257 PTHR32018 PTHR32018:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49452 SSF49785 SSF74650 TMhelix cd10316 cd10317 cd10320	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd10320	CDD	1	5.56