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IPR010325

Source: InterPro

Description

IPR010325 is a Rhamnogalacturonate lyase.

<p>Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [[cite:PUB00012234]]. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 20

Transcript Name Description Predicted domains Domain count
Lj0g3v0234519.1
– PREDICTED: rhamnogalacturonate lyase B-like [Cicer arietinum] gi|502131870|ref|XP_004501130.1|
Domains
24
Lj0g3v0234519.2
– PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi|356507989|ref|XP_003522745.1|
Domains
18
Lj0g3v0286319.1
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1|
Domains
11
Lj0g3v0286319.2
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1|
Domains
11
Lj0g3v0286329.1
– PREDICTED: LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase B-like [Glycine max] gi|356526739|ref|XP_003531974.1|
Domains
4
Lj0g3v0307599.1
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1|
Domains
22
Lj0g3v0307599.2
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1|
Domains
28
Lj1g3v0178870.1
– PREDICTED: rhamnogalacturonate lyase-like isoform X1 [Cicer arietinum] gi|502095475|ref|XP_004490462.1|
Domains
4
Lj1g3v1601160.1
– PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi|356515683|ref|XP_003526528.1|
Domains
20
Lj1g3v1601160.2
– PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi|356515683|ref|XP_003526528.1|
Domains
14
LotjaGi1g1v0134900.2
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|A0A0R0L4I6|A0A0R0L4I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900
Domains
10
LotjaGi1g1v0134900.4
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JH21|I1JH21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900
Domains
15
LotjaGi1g1v0415400.1
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KJ17|K7KJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415400
Domains
21
LotjaGi1g1v0415600.1
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JV26|I1JV26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415600
Domains
17
LotjaGi1g1v0415700.1
– Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KU45|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700
Domains
17
LotjaGi1g1v0415700.2
– Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KU45|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700
Domains
17
LotjaGi2g1v0329700.1
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1J4Y6|I1J4Y6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0329700
Domains
24
LotjaGi4g1v0172800.1
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800
Domains
25
LotjaGi4g1v0172800.2
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800
Domains
25
LotjaGi4g1v0173000.1
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173000
Domains
24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd10320 CDD 1 5.00