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IPR029413

Source: InterPro

Description

IPR029413 is a Rhamnogalacturonan lyase, domain II.

<p>This entry represents domain II of rhamnogalacturonan lyase (RG-lyase). The full-length protein specifically recognises and cleaves alpha-1,4 glycosidic bonds between l-rhamnose and d-galacturonic acids in the backbone of rhamnogalacturonan-I, a major component of the plant cell wall polysaccharide, pectin. This domain displays an immunoglobulin-like or more specifically Fibronectin-III type fold and shows highest structural similarity to the C-terminal β-sandwich subdomain of the pro-hormone/propeptide processing enzyme carboxypeptidase gp180 from duck. It serves to assist in producing the deep pocket, with domain III, into which the substrate fits [[cite:PUB00027701]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 18

Transcript Name Description Predicted domains Domain count
Lj0g3v0234519.1
– PREDICTED: rhamnogalacturonate lyase B-like [Cicer arietinum] gi|502131870|ref|XP_004501130.1|
Domains
24
Lj0g3v0234519.2
– PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi|356507989|ref|XP_003522745.1|
Domains
18
Lj0g3v0286339.1
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517183|ref|XP_003628880.1|
Domains
14
Lj0g3v0307599.1
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1|
Domains
22
Lj0g3v0307599.2
– Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1|
Domains
28
Lj1g3v0178890.1
– PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] gi|356500777|ref|XP_003519207.1|
Domains
8
Lj1g3v1601160.1
– PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi|356515683|ref|XP_003526528.1|
Domains
20
Lj1g3v1601160.2
– PREDICTED: rhamnogalacturonate lyase-like [Glycine max] gi|356515683|ref|XP_003526528.1|
Domains
14
LotjaGi1g1v0134900.2
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|A0A0R0L4I6|A0A0R0L4I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900
Domains
10
LotjaGi1g1v0134900.4
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JH21|I1JH21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0134900
Domains
15
LotjaGi1g1v0415400.1
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KJ17|K7KJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415400
Domains
21
LotjaGi1g1v0415600.1
– Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JV26|I1JV26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415600
Domains
17
LotjaGi1g1v0415700.1
– Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KU45|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700
Domains
17
LotjaGi1g1v0415700.2
– Rhamnogalacturonate lyase; TAIR: AT1G09910.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7KU45|K7KU45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415700
Domains
17
LotjaGi2g1v0329700.1
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1J4Y6|I1J4Y6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0329700
Domains
24
LotjaGi4g1v0172800.1
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800
Domains
25
LotjaGi4g1v0172800.2
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0172800
Domains
25
LotjaGi4g1v0173000.1
– Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|K7MSC9|K7MSC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173000
Domains
24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd10320 CDD 1 5.56