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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0197600 |
| Transcript ID | LotjaGi1g1v0197600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G30780.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780; TrEMBL-Plants: tr|I1M9X8|I1M9X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0197600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:40715959..40719650) extracted from Lotus japonicus Gifu genome v1.2.
TTTCGTTTGGGTTCTTGAACGAATCCAGCGTTCTTCCCAAAATCAACGCCGTTCTTCCTCAATTCAATGTCGTTCTACCC CAATTTCATGATTTAGGGCTCGGAATCGTTTTCCCCCAAATCAGCGATTTAAGGTTTGCGGTTTCGCCCAAAATTGGGAA CTCTGTGCTCAGCGGCGGTGTTCTTGGTGATTGTGGTGGTGATTCAGCGATTGACGGAGCAGGTAGGCCTCCAGGGAAGC CTCCAGATTCGTTTTTTTGCAGCGGCCAACTGTGCTTCTTGGCCGCAGATTCTTGGCAACCAGTCCTTCGTCCACCGCGG AAGCCGCCATACATCTACCTTTACAGCGGCAATCACGGTTTCTTGACCGGCGACTCTTGCAAGAAGGTGATGGGGAAGAG ACCACCGGCGAAGCCACCAGACTCGGCGAAGGACGGCGACAGAAGAAAGGGAGATGAAGGCGTGAAGGGCCACCGACCTT GCTGTTGCGGCGGTGGAAGCAAAGAGAGGGTCTCGATTCTCGCTGTTACAGTGAAAGGGATGAGGCCACAAGTGAGTGGG AAAATGCTGGACCCCTCTCCCATTCGAGTGGGCCAAGCCCAAGCTGTTCAGAGAAGGAGTTGGGCCTTGTTGGTTTTGGG TCTGGCAGGAAACAAAAAAAAAACAAAGGCCTGGAGAAGCATGTCTGTATGGGTTTAGATGGGTTTAGATTTAAAAGACT ATTAGGCAACTAGGAAAGTTGTTGCTACTTTTTCTTTCTCTTTCTAGTTTTGGAGCCCGTTTCAATTTTTTGAGTCTTGT TTCATTTAGTTGTTCATTTAGTTGTTTGGATTTGTTTGTATGTTTCCTTGAGGACAAGGAAAATTTTAAGGGGAGGGATA TGTTACGCATATAAATAGGGATTGGCCTTGTAAATTAGATATGTTGAATATTGTTGAGATAATGAAACCCCTTCTATCCC TTTGTTCTCTCTTCTCTGCCCCTATTCCCTCTCTTCTCCCTCTCTGAGATTCTGGTTGTATCACAATTCCATCTTCCTCT TCCGTGCGGTGATTTGGATGCTTGACTTTCTCCACAATATTTCTGGATTTCCATGGTAACCTTCAGTTTCTCTTCAATCT TATTGCTAACTCTAATATTTAACGCTTGTATCTTTTTTCAATTTTTGGTTTTGAATCGAACGTTCTTGTTAATCTAGTGA ACTTTGGCTCTCAGAATTGTTCTGTTCTTTCCTCTGGTTTTAACACTTCACAAGGTTAAAAGGATCGGAGAATCTCAATT GGAAGCAAAATTGGGTTTCTCCCTCATAGAAACTGATGGATTTATATTTAAATCTGAAAATTTAAAGAATAACTGGTTGT AGCAGGTAATATTGAGTGGTGCATTGGTGCAGGACATGTGAGGTGCTTCATTGTAGAAGCCACCAGGTAAATCCCAAACA AAGCAAACCAGATTCGTGGTTGCAACTGTACCGATATGAAAAATGGCGTTTGCTATTAGGGTTTTAAGGACAGTGGGAAA GAGATTTGAGTTCTTTCCAGTTCCTCAGCATTCCTTCTTCTTCTGCAAACATGCAAATTTGAATGCAAATCCCCTTCTCC TCAAACTAGTTCAGGTCTCCAATTCACGCATCAAAACGACACTGGATCAGGAAATGCCTTCCTTTCAAAGCTCACAACTA TCCTGGGATTCGCTTGTTACATCTCTCATCCCTTGTTCTTCTGATAAAGCTCGCTTGGTACTGTTTTTCCAACTCTAGGT TTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCACTTTTGGGGGTATGAA TTGATTAAAAACCGTACCAATTGGTTAAGTTCAGTACGAAGAAAAATAAGTAGACGGGTTTAACATTTGCAAGTATTAAT TTGCTGCATTGTAACCAAATGGATTTTTAAGCCCACCAGTTTAGTTTCTTTTACCATTTTCTTAATGGTAATTAACTGTG TCAATAAACATTGTGATGAATTTTATGTACAATGTGGTTTCAGCTTGTTGATAGTACCAGTTTGGATACAAACCAAAGAG CACTTATTGAAGTGTTTTTATTGAATTTTCTAGTGGATAAGCTCCAATAAGCCCGTATCCAAACAGGCTCTTATCAGCAG TTATACTTCTTTTATATAGTCTTTTTTTAATTTTTATAACTGGCTTTGCGTGATGAAAAAAAGGGGAAAAGAGTTTTGTT GTTGCTGTTGCTGTTGCTCGATGCCTATAGTCTATAGAGATTGTGATAATCAATGCACTTACATATTATTTTTAACTGGC CAGGTTTTGGAATGGATTTTGGAGAAAATGCTGAAAGAGAATGTAAAAGACCATAGTCTCTTCTCTGAGCTCATCTTGCT ATGTGGAAAGCTGAAGAATCTGCCACTAGGAATGCGCGTGTTTACTTCTATGGAGACTATTGGAGTTAAACCCTCGTCCT TGGTTTTTAATTCCCTTATTAGTGCTTGCTTGTCTTCCAATGACATTGTTACAGCATATAGTTTATTTGAGATCATGGAG AGTTCAGAAAGTTATAAGCCCGATTTTCACACCTATAATATCTTTATTTCATTTTTTTCCAAGTCAGGGAATGTTGATGA CATGTTAGCTTGGTACTCGGCTGAGAAGGCTGCTGGACTCGGTTCTTATCTTCAAATGTTTGAATCCCTTATATCAGGCT GTGTTAATTCGCGAAACTTTGAGATTGCTGATCAAATTTTTGAAGAAATGATGGTTTCTGAAATCATACCTAGTGTATCC ATACTGGAAAGTATGCTTAAAGGGCATTGCAAACAAAAGAGTTTGGGTCGAGCTGAGGAGTTCTTCAGGTTCGTGCTAGA TACCAGGTGGGAAGTCAGCGAAATCATGGCTGAGATGTTAGTAGCATTGTATCTTGAACAAGGGCGTGTGGAAAAGATGG AGGAGCTACTCGAAACTATGACAAAGCCATGTCTAGTCAAAACTGGCGTGCTCTCACAAATCCATTGTGGGATTGTGAGG ATGTATGCCATGTTAGATAGGTTGGATGATGTAGAGTTTGCTGTGGGCAGAATGCTGAAACAAGGGTTGTCGTTCACATG TGCGGATGATGTTGAAAAAGTTATCTGCTCATATTTTAGAAGGGAAGCTTATGATAGACTAGACATGTTCTTAGAATGTT TGGAGTGTTGCTATGTGCTTACCAGATCAACTTATGACTTGTTGATTTCTGGCTATAAGAGAGCAAGCTTACATGAAAAA GTAGATTCAGTGTTGGAAGACATGAAATCAGCGGGACTAGTGTGAGGATAAAACTTACCTACAGGACATCAGATATTGTC TGTGTTGTTGCCCAATAAAAACTTAGCTACCCACTTTTTAAATTTGATAATTTCCTCAACTTCTCATTTTATAGCTGTGT CACATTGTAATTTCCTCAACTTCTCAGTAAAGACTAAACATTTGGAACTGTATCAAAGTTTTGTCTTGAGAATAACAGAG CTAATGTGATGATGGCAGATGAGCTCCATTAAGCTCCTTAATTTTTACAACAGGTAGCAATTTGTGTTGTAACCAAGCTA TGAGTTCAGTAGTTTACAATCAATGAAATATTACAAAAGATGTCACTTTACCACTTGCTGTCGATCAAGATAACATGAGG TAAGTCCAGGCA
CDS sequence (LotjaGi1g1v0197600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAAAGGGGAAAAGAGTTTTGTTGTTGCTGTTGCTGTTGCTCGATGCCTATAGTCTATAGAGATTGTGATAATCA ATGCACTTACATATTATTTTTAACTGGCCAGGTTTTGGAATGGATTTTGGAGAAAATGCTGAAAGAGAATGTAAAAGACC ATAGTCTCTTCTCTGAGCTCATCTTGCTATGTGGAAAGCTGAAGAATCTGCCACTAGGAATGCGCGTGTTTACTTCTATG GAGACTATTGGAGTTAAACCCTCGTCCTTGGTTTTTAATTCCCTTATTAGTGCTTGCTTGTCTTCCAATGACATTGTTAC AGCATATAGTTTATTTGAGATCATGGAGAGTTCAGAAAGTTATAAGCCCGATTTTCACACCTATAATATCTTTATTTCAT TTTTTTCCAAGTCAGGGAATGTTGATGACATGTTAGCTTGGTACTCGGCTGAGAAGGCTGCTGGACTCGGTTCTTATCTT CAAATGTTTGAATCCCTTATATCAGGCTGTGTTAATTCGCGAAACTTTGAGATTGCTGATCAAATTTTTGAAGAAATGAT GGTTTCTGAAATCATACCTAGTGTATCCATACTGGAAAGTATGCTTAAAGGGCATTGCAAACAAAAGAGTTTGGGTCGAG CTGAGGAGTTCTTCAGGTTCGTGCTAGATACCAGGTGGGAAGTCAGCGAAATCATGGCTGAGATGTTAGTAGCATTGTAT CTTGAACAAGGGCGTGTGGAAAAGATGGAGGAGCTACTCGAAACTATGACAAAGCCATGTCTAGTCAAAACTGGCGTGCT CTCACAAATCCATTGTGGGATTGTGAGGATGTATGCCATGTTAGATAGGTTGGATGATGTAGAGTTTGCTGTGGGCAGAA TGCTGAAACAAGGGTTGTCGTTCACATGTGCGGATGATGTTGAAAAAGTTATCTGCTCATATTTTAGAAGGGAAGCTTAT GATAGACTAGACATGTTCTTAGAATGTTTGGAGTGTTGCTATGTGCTTACCAGATCAACTTATGACTTGTTGATTTCTGG CTATAAGAGAGCAAGCTTACATGAAAAAGTAGATTCAGTGTTGGAAGACATGAAATCAGCGGGACTAGTGTGA
Protein sequence (LotjaGi1g1v0197600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKRGKEFCCCCCCCSMPIVYRDCDNQCTYILFLTGQVLEWILEKMLKENVKDHSLFSELILLCGKLKNLPLGMRVFTSM ETIGVKPSSLVFNSLISACLSSNDIVTAYSLFEIMESSESYKPDFHTYNIFISFFSKSGNVDDMLAWYSAEKAAGLGSYL QMFESLISGCVNSRNFEIADQIFEEMMVSEIIPSVSILESMLKGHCKQKSLGRAEEFFRFVLDTRWEVSEIMAEMLVALY LEQGRVEKMEELLETMTKPCLVKTGVLSQIHCGIVRMYAMLDRLDDVEFAVGRMLKQGLSFTCADDVEKVICSYFRREAY DRLDMFLECLECCYVLTRSTYDLLISGYKRASLHEKVDSVLEDMKSAGLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 15 | 8 | - | – | |
| Phobius | 16 | 22 | 7 | - | – | |
| Phobius | 23 | 370 | 348 | - | – | |
| Gene3D | 36 | 156 | 121 | 5.8E-18 | ||
| PANTHER | 37 | 369 | 333 | 1.5E-160 | – | |
| PANTHER | 37 | 369 | 333 | 1.5E-160 | – | |
| ProSiteProfiles | 53 | 87 | 35 | 8.21 | ||
| Pfam | 87 | 134 | 48 | 6.9E-8 | ||
| ProSiteProfiles | 88 | 118 | 31 | 7.739 | ||
| TIGRFAM | 91 | 124 | 34 | 9.7E-4 | ||
| ProSiteProfiles | 124 | 158 | 35 | 8.254 | ||
| TIGRFAM | 126 | 148 | 23 | 0.002 | ||
| Gene3D | 157 | 264 | 108 | 1.8E-15 | ||
| ProSiteProfiles | 159 | 193 | 35 | 8.89 | ||
| Pfam | 160 | 196 | 37 | 0.0025 | ||
| TIGRFAM | 163 | 194 | 32 | 1.5E-5 | ||
| ProSiteProfiles | 194 | 228 | 35 | 6.971 | ||
| ProSiteProfiles | 229 | 263 | 35 | 6.292 | ||
| ProSiteProfiles | 267 | 301 | 35 | 5.152 | ||
| ProSiteProfiles | 337 | 370 | 34 | 9.328 | ||
| Pfam | 339 | 369 | 31 | 3.3E-4 | ||
| TIGRFAM | 340 | 370 | 31 | 1.9E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0197600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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