Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0197900 |
| Transcript ID | LotjaGi1g1v0197900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G24710.3 pachytene checkpoint-like protein; Swiss-Prot: sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog; TrEMBL-Plants: tr|G7J4A8|G7J4A8_MEDTR Thyroid receptor-interacting protein; Found in the gene: LotjaGi1g1v0197900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:40983553..40990697) extracted from Lotus japonicus Gifu genome v1.2.
TCTCAAAGCAAAATGAGTGCTCCCATGGACACGGAGCAAAACCCCACAACCACAATCGACCAAAACGCCGTCGCTTCCCA ACACTCACAACCCGCCGTCGCTTCTCAACACTCACCACTTCCTTCTTTCATGTTTTCCGAGGACAAAGTTCTCGTCCCTG GTACGAATTGAACCTCCCTCTCGCTCTCTCTCTCTCTCATTTCTCTTTCCACTCTACTCTGAAAAATCACTTTGATTTTG TTTCCAGTTGAGGTATGCTTAAAACCTTCCAGCACAGCTCCAATCGACCATGTCCGTTCAGCCGTTGAGGGGTAATCTCT TCTCTTTCTCTTCTTCCCTATACTTCACTGCTAATTTTAAGGTATCATTTTTGTATTTTATGCCAATTTGTTTATATCGC TATACACTCCAGAGATTACCTAATTAAATTTCTTACCCTAATTCTAGCTTACTGTGAGTGTAATTGGAGTATTAACTAAG AGATCTATCGCATCATCGCGTTCTTTGTGATTATTATGTGAATAATGTGATAGTGTGTAATTATGGTCATTCCACTAATT TTCAGGATGCTTGAAAAGAGGAGTTTGAGCTATAGTGGAGGACCCATTCCCGTTCCCACGGATGAACCGTTTCTTACAGA TAACGTGCAAAGAATTTGTGTTTGTGATACAGGTATGTTATGCATTTCTTTATTTTTAATTGTCTGCACTGTAAGTGGTA AGTCTGCTTTCCATCATTCTGGAGTGACAAGATGTGAAGCTTCACTCATTTCATTTCAAATATGATGTTTTTTCCCCTGA ATCTGAAAATCCAGAGACTCTTCTCTTGGTCTCTTACTTACTTGAATTGAGTGGTTTATTGTGGTGAACAAACTTTCAAC TCAATTCATATGAAGAGTTTAGTTCATTTATCATAAAGTGCCTGTGAAGACGGATAGCCTAATACACGTTTAGCAATCAG GTTGACAAAATGGAAGATTAGTGTTAAGATGAAATGGATTTTCTTCTTGAGCTTTTGAAGCAATCATTCCCTAGACACAG AGAGATAGAGAGATTTATTTCTCCTTCTATGATTTTGGTGCTTTTCTTTTTTTGTAGATGAAGGGATGCACGATGATAAT GTTCTTTTGTTCTGGCAAGTCAAACCAGTTGTACACGTCTTTCAGGTAATACTGTTGCCATATCCTTGACTCCTTGTTCA ACTAATATATTCAAGAATTAATACATGGTCCTACAATTTCTCCCGTTCTGTCTTTTCATACTTGTTACTTGGTCAAATGA TCTTCTCGCATATATTAGGTAAACTACCAGATGAGTTTATAACTATGCGATGTTTCACTATATATTCAATATCACATTCC CTCATTGTCAATTTGTATGTCTCTCTAGTCTAGACAATAGAATATCTTTCTTCTGTTTTTATTTAAGTTGAATCACAGCT CGGAACTTCATGAATATTGTCTGGGTTTTACTTTGTCAGCTTAGCGAGGAAGGACCGTGCGAGGATGTAAGCTCTGATGG CCAGTCTTCTAGCTTCAATGAGTGGATGCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGGTTCATACTTCTTAGTA GTCTATGCTTTTCCTCAACTAATTCTATTATATTATTGTTGAATATCTGTTAAAATTTAGTTTATTATTAGTCTTATCTC ATAGAGATATAGTTAAGTTTTGTTTCTCTATTTTAGATTAATATCTTTTAAATAGAGATAGGTTTAGATAGATTTAGTTT CTTTTTATCTCTTTGTTAGTCTATATATATTGTAGTCTATATAGTCAGGTATTATTAATGAAAATACACAAGAAATATTT TATCAGATTCAAGTATTATTATTTTTTCTTTATAAGTAATATTAATAATTACAATCTAAATTTGTTTAACCTGCACTGTC TACCATTTCTCTTGCAGCTTAATATATGAATCTGGCCTAAAGCAACGATTGTTACGTTATGCAGCAAGTGCTTTGCTCTT TACTAAAAAGGGTGTTGACCCATTTCTAGTTTCATGGAACCGGTAACCACTTGAAATATTTGGTTATTATTTAGTTTGGT TTTGGCTCTGACTTTCTTTGTACGATCTGCAGTTCTGAAGATTTGTTTTACAATTGCATGTGTTTTCTAATGTTCATGTC CATGATCTTGCCGGGCAAACTATATGTATCATATTAATTCATATATAATTGTAAAACCCTAATTTCTGGACCTGAAAGTC AACTCCATACAGCGGCAGCACGAGCTGGACATTTATTAAGTGGTTTACTTCAAATTCCTTGAAGAGAAAATTGTGCAGCT TATGGAACTATGGCAAACAAAAGTTTATTGTCAAAACCTGTAATCTTTTTTAAACTCTTTGCAAACGTTAGAAACCAAGA ATAGCACTGCAAAAAGAACAAGGGAAGGAGAATAACAACTTGCTGATGGTGGGCCATAGGGGTGAAATGGGCTGGGCTAG GCTAGGCCTGGCTTTCATTCGGAACTCGCGACCCAAGCCTTGGCTTGTGGCCTTTCGTAGGCCAAATTTTAAGGCTGGCC TTCTAGGAGGCCTGACCTGGCCTATGAGCCTGTTTGAAAGCCTACTTACCTAAAAATGTCCTCTTAAAGAGGCTAATAGG CCAATAGGCTAATAGGCCTTGGGGCTAATAGGCTACGAGCTAATAGGTCAGCGGGCGTATTTTCAATTTATATCAACAAA CACAAACAGGATGCTGCCACCACATTGAATCTAAAGTTAAAACTAAACTTGAAACACAACATGTTTGATACCACATTAAC ATACACCTATTTGAAACAAACACAACTAAGAAATCATGAAACAGGGAGATGAAAAAGAACCTTGAATCAGAGATGATGTG GTGGCCATGCTTTATGGTGACTTGGACGATGAACGTGCTCCATTGGGGTTGCTCCTCGGTGGTGCCCGCTCCTCCTTGGT GGTGGTCGGACGGGAAGTGGAGGGCTGGCGGCGGTTGCTTTAGGCCTTGAGGAGTTGAGCGGCTGCTGGGTGAGAGGCTG AGAGAGTGAGAGTTAATAGAGTCCTCGAGGGTTAGCTCAAGTGGTAAAAGCTAGGGGACATAAGGGTTGGGTGGGATGAA GGGTGAAGGGTCCAGGGTTCGAACCCTGAGGAGAGACTAATTTACAAACATTACTAACAACTAACATTTACCTATAAAAA AACAGAGTGAAAGACAAAAGGAGAGAACTTTTCTAATTTAGGTTTTCATCTTAGAATCTTCTCTTTTAGTTTTTAGTATT TTTGTATTTTTTAGACATGATATTAAATTTATTAATATTTTTTGTTACAATTAAATTTATTAATTTATCAAAAACAATAA TTAGGTAAGTGGGCCGGCCTATCAGGCCTAATGGGCTTTTTTGTAAGCCTAGGCCTAGCCTTTTTAACTAATCAAGGTTT TTTCAAAGCCTAAGCATGGCCTTTTTAGCAAATAAGCCCGGCCTTTGGTAGGCTAGTTCGTAGGACACCAACGAGCCGCC CGGCCCTGGGCCCGTAATTTACTCTCTTCTTTGAGACTGAATCCTACTGAAAGTGAATAGTTTGTATTTTACAACAAATA ATAACATTTAGTCTGTTTTCTGTATAGAAAGTATGAAGAAAAGCATGTTTCTTTATCTCTTTTTGTCTAATTTTTATATT GTCAGTAAAACTGTTTTGGGAAGTAATAATGGCCAAGGTCATAGATAATCTTCAGTGTGATGATTGAACTGTGAACATAT TTGATATTTTTGAGACTTTTAAATATTTGCAGCATAGTTCTTTTACATGGACCCCCAGGAACTGGAAAGACGTCTTTATG CAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTTAAGGTGCATTGATCTATTATTAATTTGTAATGTTATGATAT TTGCCAGTGAAAACAAGTAAATAAAGGGAGCAAAAATTAACCTTTGCCTTTTTTATTTTACACACTCAGATACCCACATT GCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTATGCATGAACGCC TTTACTTAGGTTTATGACTCTTTCATTGGTTTGCTTATTCTTTTTTCCTTAAGTCACAAACTTATTGCGAATTGACTCCA AAACTTCTTGGTTTCTTTTCTGTTAAGTGGGGCATAGAATTTCCTGTATGTATCATTGCCACTGGCAAGTTTATATTAAG TAAGATCTAAGGATTGGTTGATTCAGGGTGCTAGGACCTAGGAGGAACACCTTTTGGTAGATAGAACTTAGAATTGCACG CTGAAAATGTGGAATTTCATTATTTGTTCCTATGTATTAGGCAAGACTTTTTTTAACTTTGGTTAGTGTCTCCAGATATT TTCCTATAGCACTGGATAAAGTTGTTTGGGTGCCATTCTACTTCCATATGATGGATAACAGTTTTTTATGGGAACACATT TACTTGAACATTATTACTTTGGGAGTAGACTTAATTTTAGATAGAATTTTTTCATCTTTCAACTGGACCAGTTTTCCTTG TTTGTAGTTTTTCATTGGAGGATGTCGTATCCTCCCTTGATACGTCCTCTAGATGGGTGTGTGTAGGTATGTAGGTCCAC CAAAGTCGTAAATCAATTGGGGGATGGAGTTGATCTAGCATAATGGTGGTCATGAGTTTGAGCTCTAGGTATGGAGCTGT GCTAAACTTAGAGTGAGAGTTTTGAGACCAATTTTGCTCTATTTGGCTTGAGTATATTGCAGATATATCTACCAAGAGGG AACTTTATAAGCGAGAATGAGAAGAGTAAATCTTAACCATGACAACCCTAAACCCTAAATACATGGATGATCAATATTAA AGGTTATTTAATGGTTACATGACCATTTAAAAATGATAAGTTACTGCTTAAAAACATCATGTGAGTATGTTTTAATCTTG ATTATTTATTATTAGATCTTATTATTAAGATTTTATTATTCTCATTATCATGTATCATGTGAGCGGATTTATTGTGAGAG AGAGATAAGAGGAGTATATCTTGAAATGGTGAAGATTAAAACATAGCCATGTGATCATGTAATCATTTAATAATGTTTAA GCTTAATCATCTATATTTGATTATTATACGTCATGATTTTAGGTCTAATCTCTCATAATAAGTCTTCTTTACATGATATA TAGATAATGTGATGAGGAACAAGTCAGTTACATATTTACATGTACGAGACAAATGTCTTTTTTAGTTAACATTAATCCAA GAATCCCTTACACTTTGAAATTGCCAACCATAAAAATGCAGTATCCGATACATGAGTGTTTTTGTATGGTTTGTTGAATG CGTGACTGTTTCTTTGTTTTCAAGGTAGCAAAACTTTTTCAAAAGATTCAAGAAATGGTGGAGGAAGAAGGCAATCTAGT ATTTGTTTTGATTGGTGAGGCATAACAGGACAAAATTCAACTTAATGCCCATGTTTTTGTTCTTATCTGCTTGAGCATAT ATGCTTGTAATCTGCAGATGAAGTTGAAAGCCTAGCTGCTGCAAGAAAAGCTGCCTTATCTGGTTCTGAACCTTCGGATT CTATTCGGGTAAAGGCCTCCCTCCTGTGCTCCTGGCTGGAATATACTCCCTTCTTCCCACTATTGAAAAATTTAGATTGC ACACAAACACGCTAAGTGTCATTCGGAGGTATTTTCTCTTTTTAGTGTGTTTGTGTATTAATGCAATTTAAATCTGAATA TGCAATTTCAGGTTGTCAATGCTTTGCTAACTCAGCTGGACAAGTTAAAATCAGCTCCAAATGTGATAATTCTAACCACA TCCAACATAACTGCTGCCATCGGTAAGCCTTAATCAGTTCTCATAAATTTAATTTTACGGCTGCAAGTTATGTCCTGTCG TCCCATAAATTTGAATAGTTAGATCTGTTTTGGTCATAATTTGAACAGTAAGAACAGAAGATGTAGCTTCCCGATACTGG GATGTAGTGAATTCTTGATTTTATCATGACTAACGGTGGGAGTTGGAATCCTGTACAGTGCATAATGGCCTGTTTGGGGT ATTTGAATTTGGAAGTCAAATTTTTACAAAATGTTGCCAGCATAAGCACTAGAACAGTAAGGATTATGCTCCTCCTCTAG AGTGAGACTCACATTAGAAAAATCAATGGTTGACCATAATGCTATACATGTGCAAGTATATGATCACAATCACAACCGTT AATTTTTCAATCAACAGCTGTGATGACTTACTCTACACTCTAAAATGAGTCCCTCTAAAGGGAGCCAAATCTGAACAATA ATATGCCCAGATCTGAAAATAACACCACTTTCATATAAAGCACATCACAACAATAGTCTTTCTCTACCAAGCGGGAACAC CACCCCCATGTCTTGTTAAAATAGTTTCTTCAGTATCCACTTCCCTCATAAATTTTCATTTGAAATGCATTGTTTTCATA TGTTGCGGATCATACAGATTTATTGCTTTTATTGCAGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGG TCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCTTGCGTGCAGGAACTGATCCGTTCAGGGATATTAGCTAGTT TTCAGGTGAAGAGACTTCTCAATCTTGTCCAGGAAACTTTTATAGAAACAAGAAAGCCATTCATATTTTAATCTTTGTTC GGATTCAGACATTATGGCCTTGTTAGTCTTACAGGTTACAGCTAATAATACTTCCTTGGTTAGGATTGTAAGAATGTCAT GCTTCCAAATTATGCTAACGCAAAGGAGAGGTTGAGCGCACCAGATTTTCATGAGCCTGATGCATCCATTCAACTGTGCA AGCAACTACTTGAAACTGCAGAGGCATGTGAGGTAGGAAAAAAGTACTACTTGTGGATCTTGAACCTCACAATCTTGACG TGGTTAACTCTTAATTTTGACTGTTGTGTTTGATTTGTTAACAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTT CTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTGTGTAAAATGGTAGAAACAGCAAAGCG GGAGCGTTCTGAGCTTCCCGACTAA
CDS sequence (LotjaGi1g1v0197900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTCCCATGGACACGGAGCAAAACCCCACAACCACAATCGACCAAAACGCCGTCGCTTCCCAACACTCACAACC CGCCGTCGCTTCTCAACACTCACCACTTCCTTCTTTCATGTTTTCCGAGGACAAAGTTCTCGTCCCTGTTGAGGTATGCT TAAAACCTTCCAGCACAGCTCCAATCGACCATGTCCGTTCAGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTAT AGTGGAGGACCCATTCCCGTTCCCACGGATGAACCGTTTCTTACAGATAACGTGCAAAGAATTTGTGTTTGTGATACAGA TGAAGGGATGCACGATGATAATGTTCTTTTGTTCTGGCAAGTCAAACCAGTTGTACACGTCTTTCAGCTTAGCGAGGAAG GACCGTGCGAGGATGTAAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAGTGGATGCTTCCTGCAAAAGAATTTGATGGC ATGTGGGAAAGCTTAATATATGAATCTGGCCTAAAGCAACGATTGTTACGTTATGCAGCAAGTGCTTTGCTCTTTACTAA AAAGGGTGTTGACCCATTTCTAGTTTCATGGAACCGCATAGTTCTTTTACATGGACCCCCAGGAACTGGAAAGACGTCTT TATGCAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTTAAGGTACCCACATTGCCAGCTTATTGAAGTGAATGCA CATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTTCAAAAGATTCAAGAAATGGTGGA GGAAGAAGGCAATCTAGTATTTGTTTTGATTGATGAAGTTGAAAGCCTAGCTGCTGCAAGAAAAGCTGCCTTATCTGGTT CTGAACCTTCGGATTCTATTCGGGTTGTCAATGCTTTGCTAACTCAGCTGGACAAGTTAAAATCAGCTCCAAATGTGATA ATTCTAACCACATCCAACATAACTGCTGCCATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCC CCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCTTGCGTGCAGGAACTGATCCGTTCAGGGATATTAGCTAGTTTTC AGGATTGTAAGAATGTCATGCTTCCAAATTATGCTAACGCAAAGGAGAGGTTGAGCGCACCAGATTTTCATGAGCCTGAT GCATCCATTCAACTGTGCAAGCAACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCT TCCATTTCTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTGTGTAAAATGGTAGAAACAG CAAAGCGGGAGCGTTCTGAGCTTCCCGACTAA
Protein sequence (LotjaGi1g1v0197900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAPMDTEQNPTTTIDQNAVASQHSQPAVASQHSPLPSFMFSEDKVLVPVEVCLKPSSTAPIDHVRSAVEGMLEKRSLSY SGGPIPVPTDEPFLTDNVQRICVCDTDEGMHDDNVLLFWQVKPVVHVFQLSEEGPCEDVSSDGQSSSFNEWMLPAKEFDG MWESLIYESGLKQRLLRYAASALLFTKKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNLRYPHCQLIEVNA HSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSAPNVI ILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCVQELIRSGILASFQDCKNVMLPNYANAKERLSAPDFHEPD ASIQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCKMVETAKRERSELPD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 460 | 420 | 1.1E-182 | – | |
| Gene3D | 144 | 366 | 223 | 1.4E-40 | – | |
| SUPERFAMILY | 151 | 431 | 281 | 4.21E-38 | ||
| SMART | 197 | 349 | 153 | 1.2E-11 | ||
| CDD | 199 | 347 | 149 | 1.84745E-17 | – | |
| PRINTS | 201 | 219 | 19 | 1.6E-5 | ||
| Pfam | 201 | 346 | 146 | 3.9E-32 | ||
| PRINTS | 315 | 329 | 15 | 1.6E-5 | ||
| ProSitePatterns | 319 | 338 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0197900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…