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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0210600 |
| Transcript ID | LotjaGi1g1v0210600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-splicing factor SLU7-like protein; TAIR: AT1G65660.1 Pre-mRNA splicing Prp18-interacting factor; Swiss-Prot: sp|Q9SHY8|SLU7A_ARATH Pre-mRNA-splicing factor SLU7-A; TrEMBL-Plants: tr|A0A072UDN9|A0A072UDN9_MEDTR Pre-mRNA-splicing factor SLU7-like protein; Found in the gene: LotjaGi1g1v0210600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46070234..46075398) extracted from Lotus japonicus Gifu genome v1.2.
GAACAACTAAAACGCAGTCGTTTAGAAAAAAGAATCACCGCCATTATCATAAAGAAAAACTGCATTTGTTAAACTCGATA CCTAACCTGAGCGCTATCAATTCATTCGCAATCAGAGTGCTCGATTCTGCATCCTTCTTCTCCTTCAATTTGTATTCAGA TCTTCGGATTCGTTAACACCATGGCAACCGCATCAGGTACTCGTATTTTTCCCTTCAATTTGGATCCTCTTTTGCACTTC TCATTGATTAGGGTTTGTACTTTGTATCATTCAGTCATCAATTCCGCTTTCTATCATTAGATTTTCATTATTCGGGTATA TTCAGTTCTTGTTGCACAATTTTTTAACCGATTGGGATTTTCCTCTTTTTTTTTTGTTGCTCAATTGATTGTTAATTATT CAGATGAAATCCTGCATGTTTTTCAATTCATAGCTGTTACTCAATTCTAACAAGATGGTAATCTTGGTAAAATCTGGAGA ACATGAATAGATCGAATTTTGATTTGGTTTAGGTTCATGGGTAGGAACTAACTGTTTGCAATTTGCATCCTCATTTGTTG AGTGGTTTTTTTATGGAAAATTTAACATGACTATGCACTTACCCCAGTTTTCCTTATAGCTTAATTATTATCCGGTGTGT GTATGTTTTTTGAACTTTTATTGGGTTTATCGCAGTGGCATTTAAGTCGAGGGAGGATCATCGCAAACAGATTGAGTTGG AGGAAGCCCGTAAAGCTGGGCTTGCTCCAGCTGAGGTGGACGAAGATGGAAAGGAAATCAATCCCCATATTCCGCAGTAT ATGTCTTCTGCGCCTTGGTATCTTAATGCTGAGAGACCTGTAAGTCTAACCTACAATTTTTTATTCATATATTGTTTATC TGCATGAAATTCTGATAACCGACATATTCTTCTTGTTTTTCCCCCTCTTATCCTTGTAGAGTTTGAAACATCAAAGGAAA TGGAAATCTGATCCCAACTACACTAAATCATGGTATGATAGAGGTGCTAAAACATTTCAGGCTGACAAGTTCAGGAAAGG TGCATGTGAGAAGTAAGTGATCTCTTTCCTTATTCTTCAAGGTGTGTGTGTATGTTGTGTCTCCAGATGCTTCTTGTTCA TCAACTTAACATGAAAATGAAATATATTATTTGGTTGCTGAGAGGCCGATAATTTTATTTTTCCTGTGTTGGCGTCTTGT TCATAGCTGTTAAACTCTTCAGTTAGCTCTTATATGGGTTTAGGGTAACGTGCAGGTGAACACACTGTCAAACTAGTAAA AGTAAGTAAACTTGCACAAAATAGGATAGTTCAATTCTTCTGTTAGTTTACCGGCCTGGGTCTATTCATGGTTTCAGATT TCTTGGCTGATTTTATTGGATAATTTAGTTAAGTTAAATCTCATAAGAAATATGTAATAATATCTAGGATTGGTTTATGG TTCAGCTTCAAGCACAAAATTGAATCGATCTGAACTGGTTCTGGTTCGGCCAAAATGAGCTAAACTACTTGTTTTGTACA AGAACAAAACCAAATTGACCTGGCTCTTTAATTCTCTGAACTGGTTCTGTGGTTTGGGGAACTGGTTGAATTGGATTACA TAATAACTGGTTCAGAACCAGTTGAGGTTCAAGAACGTGTTCTGGAACCACCATTCAGCAGTGCATAAGAACCAATTTAA AATACTGTCTTTATATTCTTGAGAGCTTATTTTAGAATAGCCCTAATATGCAAGTACGAGGCGAAGCATATCATAACAGT TGGATCAATTATTGAATTATGTATACTGTATTACTTTTCTCGTTTTCTTTGCTTCGTTTATTAAAAGATTCTTCTTTTTT ACAGCTGTGGTGCAATGACACATGATGCAAAGTCATGTATGGAAAGACCACGAAAAGCAGGAGCAAAGTGGACAAACAAG CACATTGCCCCTGATGAAAAGGTAGAAACTTTTGAGCTTGACTATGATGGAAAACGGGACAGATGGAATGGGTATGATGC ATCAACTTATGCTCGAGTCATTGAGAGGTATGAAGCTAGAGATGAAGCTCGAAAGAAGTACTTGAAGGAACAACAGCTGA AGAAATTGGAGAAGAGTGACCAAAATGGTGAGGGTTCTGCTAGTGATGAGGATGAAGACGAAGATGATCTAAGGGTAGAT GAGGCAAAGGTTGATGAGAGCAAACAAATGGATTTTGCAAAGGTTGAGAAGCGAGTACGTACAACTGGTGGTGGGAGTAC AGGAACTGTGAGGTAATTTTATGTTACTTCCATTTTAATAATGCAAGGTCAAATTAATTGGTTTCAGACTTAAGATTATC ACTTTCATTATTTTTATTAGATGGATTGGAGCTGAAAGTTTGTCTTTTTTCTTTCAGGAACCTACGTATTCGAGAGGATA CTGCAAAATATCTTCTTAATCTTGAGGTCAATTCTGCTCATTATGATCCCAAGACCAGGTCAATGCGTGAAGATCCTCTT CCAGATGCAGATCCAAATGAGAAGTTTTATCTGGTAACTGTCTCAAAAAATCTAAATTTACAGGAAACTCTACTTTTGTT TTTACTGCTTATGCATGTTTATCTTGTATTTGTTTTAAATCTGATTTTATACTGTAGGGTGATAACCAATATAGAAATAG TGGTCAAGCTTTGGAATTCAAGGAATTAAACATCCATGCTTGGGAAGCATTTGACAAGGGGCAAGATGTTCATATGCAAG CAGCTCCATCCCAAGCTGAATTGCTCTATAAGAATTTCAAGGTCATGAAGGAGAAATTGAAGTCTCAAACAAAGGATACT ATCCTCGAGAAGTATGGCAATGCAGCTGATGAGGACAAACTTCCAAGAGAACTTCTGCTTGGTCAGAGTGAGGGCCAAGT TGAGTATGATCGTGCTGGTAGAATTATTAAGGGACAGGTATGATACACATTTTAAATTTTATAGCCTAGCATTTGCAACG GTGGTATAAATCTTCTATAAAATGCTTAGCTGGACTTTTTAATTATTCTGTTAACAATTCTCAGTTTTACGATTGATTTT AGTTTGAACTATAAGGATAGCGCTTTCATGGTGTTGCTGTTTCTTAAGAATGATAGATTTAATTGTTATTTATCTGATGC TTCAAACAGGAAGCAGCAGTCCCCAGGAGCAAGTATGAAGAAGATGTTTACATTAACAACCACACAACTGTTTGGGGCTC TTGGTGGAAGGATCACCAATGGGGCTTCAAGTGTTGCAAGCAGACAATACGTAATAGCTATTGTACCGGTGCTGCTGGTA TTGCGGCTGCTGAGGCTGCAAATGACCTTATGAGGGCTAATATTGCCCGTAAGGAGGCTGCTGCAGGTTTGTATGCTGAC ACCGTGTCTCTATCTTCTCCTTTTTCCTTTGATGCAAATTATTTCTATTTTCATGTTTGATAATTTTGCTTGATCGTATT TAGCATCTTGTTATTAATTTTTAATTTTTTTGATGAATATGTCCAGAGGATGCTAAACCAATGGAGGAGAAAAGGCTGGC TACATGGGGAACTGATGTCCCTGATGACCTAGTTCTGGATGAAAAATTGCTTGCAGATGCACTCAAAAAGGTAATATCAA TCTATCAGTCATATAACTTGCTCCTTAATACCTTGGTAATTTTCAGTGTCATTATTTTTCACATACTACCTCAATTAATT TTTGTTCCTTCCAATAACTTTGTTGTCCTTAATTACTGATGGTAAGACACCATTGTCTCATACTAAATATTGCATGTGAT TTGTTAAATAATAATGGCATGGTTTAGCTCTAGACTATGGGCATTCATTTTTTAGCATGATTCTTCTTTTCTGGAGCATT CAATCTTGTTGAGGACTTGAGGTGAAATATTCAGACATTTATGTCTGCATTTTGTGCTGATTGTTTTGGTTTTTCACAGG AGGATCAAAGAAAGAGAGAAGAGAAAGATGACAGGAAGCGTAAATATAATGTTAGATGGAACGATGAGGTATAGTTTTGG TGTCACTGATTGAGAATTATTTTTATTATCTGTCTGCATGCCCTTTTGCAGATTTTTAAACCATTTTAATGCTGCAGGTT ACTGCAGAGGATATGGAGGCATACAGGATGAAGAAAGTACATTCTGATGATCCAATGAAGGATTTCTTGAACTGAAGTTC GAGAGGGCAAAAAGGCCTGCATTTTCATAAACCTTCATGTTGTTTTGTTATTGGATTATCACTTCGGCTTCCTTGATATC CTTTGAGCAGTATGACAAGAGGAGCTGAGTGGAACTCTAATGCTTGTACAGTTTTATTTGTATGCCAAGTTATCTATGTT TCAAATACTTGGCAGTTTTAATGACCTGGTATCTTTATCAATCAACTTCGTTTCAATTATGTATCCTCCCTTCCCTGAGA TTCACAACCTTTGATAGAGCCATGATACAGATGTTACTCTGTACTGATAGTATGTGGATCGATCTCAAGTGAAGTAGGCA TGTAAGTGGCTACAGTCACAAACTCTACGTAGTAGTGTTTTTTTGTTTTTCTATCTAAAATATGGCCTTAAATGATGAGC TCAGAAGTCAGAATCTAGTTAAGGAAAATATTCTTTCTTACGAATTTCTCACTCGGATGTTATGCCCATCGACCAAAAAA AGAAAGAAGAGTAGCATAGCAAGTAACACCTTTTCTTTTGGACCAAACACCCCCATCTTTAATTTTCTTAAAACAATAAA AGTATGACTATTTTTGCAATATGACTTTTCTTTCTTCTCCTTTTCTCTTTCCAGAAAGCATCCGCCTCTTTCTTTCTTTA GATTTTTTAACCTCTCATTGTCTCACCAATCACACCTAACCATGGAGCGCAACCAATTACCACCTCCGTTTTCTCCACCA AGCGCACTGCTGCTGATCGAGTGTTGTTCACTGCCGCGTCGTTTGCCGTGTATTTGTTTGCAGTTGCATCTTTAGTAATG GAGTCGATTGCCATCACCATTGCGACGCTGCTAGAGTGTTGTTCACCACTGCTCCGTTTGCCTCCACCGTTGTGTTGCCG TGATCAATCAAAAGACCTGTATATGGGTTTGGACAAAATACATGATTTCTTTTTTCCAATCTACCTAGAAGAAAAGGAGT ATTTTTTTTTTTGGTTACAAGAAGAAAAGGAGTATGACTTATCAT
CDS sequence (LotjaGi1g1v0210600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCGCATCAGTGGCATTTAAGTCGAGGGAGGATCATCGCAAACAGATTGAGTTGGAGGAAGCCCGTAAAGCTGG GCTTGCTCCAGCTGAGGTGGACGAAGATGGAAAGGAAATCAATCCCCATATTCCGCAGTATATGTCTTCTGCGCCTTGGT ATCTTAATGCTGAGAGACCTAGTTTGAAACATCAAAGGAAATGGAAATCTGATCCCAACTACACTAAATCATGGTATGAT AGAGGTGCTAAAACATTTCAGGCTGACAAGTTCAGGAAAGGTGCATGTGAGAACTGTGGTGCAATGACACATGATGCAAA GTCATGTATGGAAAGACCACGAAAAGCAGGAGCAAAGTGGACAAACAAGCACATTGCCCCTGATGAAAAGGTAGAAACTT TTGAGCTTGACTATGATGGAAAACGGGACAGATGGAATGGGTATGATGCATCAACTTATGCTCGAGTCATTGAGAGGTAT GAAGCTAGAGATGAAGCTCGAAAGAAGTACTTGAAGGAACAACAGCTGAAGAAATTGGAGAAGAGTGACCAAAATGGTGA GGGTTCTGCTAGTGATGAGGATGAAGACGAAGATGATCTAAGGGTAGATGAGGCAAAGGTTGATGAGAGCAAACAAATGG ATTTTGCAAAGGTTGAGAAGCGAGTACGTACAACTGGTGGTGGGAGTACAGGAACTGTGAGGAACCTACGTATTCGAGAG GATACTGCAAAATATCTTCTTAATCTTGAGGTCAATTCTGCTCATTATGATCCCAAGACCAGGTCAATGCGTGAAGATCC TCTTCCAGATGCAGATCCAAATGAGAAGTTTTATCTGGGTGATAACCAATATAGAAATAGTGGTCAAGCTTTGGAATTCA AGGAATTAAACATCCATGCTTGGGAAGCATTTGACAAGGGGCAAGATGTTCATATGCAAGCAGCTCCATCCCAAGCTGAA TTGCTCTATAAGAATTTCAAGGTCATGAAGGAGAAATTGAAGTCTCAAACAAAGGATACTATCCTCGAGAAGTATGGCAA TGCAGCTGATGAGGACAAACTTCCAAGAGAACTTCTGCTTGGTCAGAGTGAGGGCCAAGTTGAGTATGATCGTGCTGGTA GAATTATTAAGGGACAGGAAGCAGCAGTCCCCAGGAGCAAGTATGAAGAAGATGTTTACATTAACAACCACACAACTGTT TGGGGCTCTTGGTGGAAGGATCACCAATGGGGCTTCAAGTGTTGCAAGCAGACAATACGTAATAGCTATTGTACCGGTGC TGCTGGTATTGCGGCTGCTGAGGCTGCAAATGACCTTATGAGGGCTAATATTGCCCGTAAGGAGGCTGCTGCAGAGGATG CTAAACCAATGGAGGAGAAAAGGCTGGCTACATGGGGAACTGATGTCCCTGATGACCTAGTTCTGGATGAAAAATTGCTT GCAGATGCACTCAAAAAGGAGGATCAAAGAAAGAGAGAAGAGAAAGATGACAGGAAGCGTAAATATAATGTTAGATGGAA CGATGAGGTTACTGCAGAGGATATGGAGGCATACAGGATGAAGAAAGTACATTCTGATGATCCAATGAAGGATTTCTTGA ACTGA
Protein sequence (LotjaGi1g1v0210600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYD RGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKWTNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERY EARDEARKKYLKEQQLKKLEKSDQNGEGSASDEDEDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIRE DTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNIHAWEAFDKGQDVHMQAAPSQAE LLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPRELLLGQSEGQVEYDRAGRIIKGQEAAVPRSKYEEDVYINNHTTV WGSWWKDHQWGFKCCKQTIRNSYCTGAAGIAAAEAANDLMRANIARKEAAAEDAKPMEEKRLATWGTDVPDDLVLDEKLL ADALKKEDQRKREEKDDRKRKYNVRWNDEVTAEDMEAYRMKKVHSDDPMKDFLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 532 | 527 | 8.4E-224 | ||
| MobiDBLite | 21 | 44 | 24 | - | – | |
| MobiDBLite | 21 | 41 | 21 | - | – | |
| Pfam | 136 | 403 | 268 | 1.3E-94 | ||
| MobiDBLite | 177 | 208 | 32 | - | – | |
| MobiDBLite | 189 | 203 | 15 | - | – | |
| Coils | 430 | 452 | 23 | - | – | |
| MobiDBLite | 485 | 505 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Second spliceosomal transesterification activity | Catalysis of the second transesterification reaction of spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure. | ||
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Pre-mRNA 3'-splice site binding | Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence. |
Expression pattern of LotjaGi1g1v0210600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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