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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0290800 |
Transcript ID | LotjaGi1g1v0290800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Malignant T-cell-amplified sequence 1 like; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q86KL4|MCTS1_DICDI Malignant T-cell-amplified sequence 1 homolog; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70648467..70650598) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCAAAAAGTATGCTCCCTCGTTCTACATTCATTTCTGCAAATTCATGCTTTGTGATTCTCTTTGCACTTGCACCTT TGCTGGTGCTTCTGGGGCCTTAAACCCTAATTTTTCATGTGTCGCATGCCCAATTTCAAGGGCATGAACATGATCTTATT GCTACCCACAACAATTTTTCATTGAATATTGGATTTTCAATGCGTGTCTTTAGATTTACGTGTGAAAAGATTTGAACTTT TTGGATTTTTTTTTTTTGCAGATTTTCAGGTGAAGAGGTTTCTGCGCAGAATCAAGTGAAGGCGTCTGTTCAACGAAGAA TACGGCAAAGCATCGCGGAAGAGGTGATTTCATGTTCTGAAATTGGTTTTTTGATGTTAATTTTTCTCTATGTTTTTCAA TTTTGTACTAACCTCAGTCACTCACTTCACTGCTGCAGTACCCAGGTCTTGAACCAGTGTTGGATGATATACTCCCTAAG AAGTCTCCTCTTATAGTTGCTAAATGGTTAGTCTTTTTCGCGGTGTTTTTTTGCGGCGTTGTGATTTTTATGGTTGCTAA CTGTTTGCTTTTTTTTTCCCTTGATGTTTGTAGTCAGAACCATCTCAATCTTGTTCTGGTGAACAATGTGCCTTTGTTTT TCAGTATCCGGGATGGACCATACATGCCCACGTTGCGACTTCTCCATCAATGTAAAGTTTATATTTCTTGCAATGTTTAA CTTGTCTAAAATACTTATTCTTCTGGGAAGTGGTACAAGCTGATGAATTATGAATATTTTAATGTTTTGGATAATGCATA CTTGCTGAATAATTTTCAATTAGGATAGGGAAATACATTTTAGGGAAAAATTATAGTTGCTTGTTTTGCATGGTGCAACC AATAACTCTATGAGCTTTTCTAGAAATTGGTTTACAAAGCTTGAAGAAAATAATGTTTAGTTGCATTGTAATTCTTCAAC TAAACTACTGTATACAAAAGGATATGTGGTGAGGAGAACCAAAGTTCTGATTTGTATGATTGTTGTGGCTCTTAAGCAGT TGGCCTAGGCTTTTTCATTTCCTTTTATCGCATCTTTATGTCTAGTCACTAGTGTGGTAATGGAAATTTGGGGGTGTAAT TTGGTTCTGTGATAGCAAGAGATCAGGAACATCTGAAAATTGATGTGGTTTATTAACTCCTATTATGCTTATAATATTGT AGTGCTCCAGAATCCAGATCATTTTTTCAAACATATGATAAAATATTAAACTTATGCTTTTGTCTGTTTAGTGGTGGGTG GGAGCCATAGGATTCATGGTATGACAAGTTATCCTGAACAATATAGAACATGAAGGTCATATGGTTTGTCATCCATTGAT GATATATATTCAAGCATTAGATTCCTCTGATACCTTGAGAATTGAAAAACTTACCTTCTATTTGCACTCCTCAATCCTTT GCATCGAGATATTGTATATTATTTGTGTTGATATTTTTACCCTACAATATAGAGAATCATGATATGGAATAGGATATAAG TGAAAAATATGAACTTGGAGAGATGGAGAGACACTCGGAGGAGGGGGGGGGACAAATCATTGTTTTCCTTATTGATACCA GTTTATCACTTTAGTCATCAATTACGTCCATCTTCACCTTTAAATGCAGGGGTAATTTAGTAATTTGTAAATATGATCAT TTCACTTTCTTGGCTTTGACCAAAAGCACTTATGAAGCATCAATAGTTTCTAGGCTCACACGTGGACTTTATGCAATCTG CAATTGTTCATTCATTATATTGCATGTTAACGGTACTATTGATTTGAATTTCACAGATCCAGATATAATGAAGAAATTAC AAGTTGACCGTGGTGCAATAAGATTTGTCTTGGCTGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGAGGTGTT TTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGTACTGCCATTATAATTTGCATTGATTGTCAATTGTAATGCACAACA TAAGCATCTTGTAGTGAATTTATATTAACTTCCATCCCATATGTATTTATCTGATTTCAGGCCATCATGGCTGAAGGAAA ACAGCATGCTCTTGCTATTGGCTTTACGAAAATGTCAGCAAAAGACATGTAA
CDS sequence (LotjaGi1g1v0290800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAAAAAATTTTCAGGTGAAGAGGTTTCTGCGCAGAATCAAGTGAAGGCGTCTGTTCAACGAAGAATACGGCAAAG CATCGCGGAAGAGTACCCAGGTCTTGAACCAGTGTTGGATGATATACTCCCTAAGAAGTCTCCTCTTATAGTTGCTAAAT GTCAGAACCATCTCAATCTTGTTCTGGTGAACAATGTGCCTTTGTTTTTCAGTATCCGGGATGGACCATACATGCCCACG TTGCGACTTCTCCATCAATATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTCTTGGCTGG TGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGAGGTGTTTTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGCCA TCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACGAAAATGTCAGCAAAAGACATGTAA
Protein sequence (LotjaGi1g1v0290800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVLVNNVPLFFSIRDGPYMPT LRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 155 | 155 | 2.8E-80 | – | |
PIRSF | 1 | 155 | 155 | 1.0E-48 | ||
PANTHER | 1 | 155 | 155 | 2.8E-80 | ||
CDD | 3 | 79 | 77 | 7.55345E-45 | – | |
Pfam | 8 | 88 | 81 | 2.0E-28 | ||
TIGRFAM | 62 | 155 | 94 | 1.9E-17 | ||
Gene3D | 85 | 155 | 71 | 7.4E-21 | ||
ProSiteProfiles | 91 | 155 | 65 | 8.94 | ||
SUPERFAMILY | 92 | 155 | 64 | 1.31E-11 | ||
Pfam | 93 | 155 | 63 | 2.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0290800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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