Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
PUA domain profile.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Glycine max] gi|356562795|ref|XP_003549654.1| | 13 | ||
| – | Malignant T cell-amplified sequence 1-A [Medicago truncatula] gi|357464025|ref|XP_003602294.1| | 13 | ||
| – | Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi|357494215|ref|XP_003617396.1| | 20 | ||
| – | PREDICTED: eukaryotic translation initiation factor 2D-like [Glycine max] gi|356544210|ref|XP_003540547.1| | 18 | ||
| – | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1| | 24 | ||
| – | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1| | 24 | ||
| – | Ribosomal RNA small subunit methyltransferase B; TAIR: AT1G06560.1 NOL1/NOP2/sun family protein; Swiss-Prot: sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6; TrEMBL-Plants: tr|K7M4N7|K7M4N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0043900 | 18 | ||
| – | Malignant T-cell-amplified sequence 1; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q2KIE4|MCTS1_BOVIN Malignant T-cell-amplified sequence 1; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 | 17 | ||
| – | Malignant T-cell-amplified sequence 1 like; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q86KL4|MCTS1_DICDI Malignant T-cell-amplified sequence 1 homolog; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 | 16 | ||
| – | Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|I1LVH4|I1LVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055100 | 23 | ||
| – | Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|I1LVH4|I1LVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055100 | 23 | ||
| – | Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|A0A151RMC0|A0A151RMC0_CAJCA Ligatin; Found in the gene: LotjaGi3g1v0055100 | 12 | ||
| – | Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|G7JKR1|G7JKR1_MEDTR Eukaryotic translation initiation factor SUI1-like protein; Found in the gene: LotjaGi3g1v0055100 | 23 | ||
| – | TRNA pseudouridine synthase B; TAIR: AT3G57150.1 homologue of NAP57; Swiss-Prot: sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4; TrEMBL-Plants: tr|V7BUX8|V7BUX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0350500 | 26 | ||
| – | 60S ribosome subunit biogenesis protein NIP7 homolog; TAIR: AT4G15770.1 RNA binding protein; Swiss-Prot: sp|Q6DFH9|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog; TrEMBL-Plants: tr|V7CA90|V7CA90_PHAVU 60S ribosome subunit biogenesis protein NIP7 homolog; Found in the gene: LotjaGi6g1v0357900 | 17 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF88802 | SUPERFAMILY | 1 | 6.67 |