Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036974
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.207s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0290800.1
n.a. Malignant T-cell-amplified sequence 1; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q2KIE4|MCTS1_BOVIN Malignant T-cell-amplified sequence 1; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 LjG1.1_chr1 70646508 70650751 -
2 domain predictions
1 GO term
LotjaGi1g1v0290800.2
n.a. Malignant T-cell-amplified sequence 1 like; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q86KL4|MCTS1_DICDI Malignant T-cell-amplified sequence 1 homolog; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 LjG1.1_chr1 70648467 70650598 -
2 domain predictions
1 GO term
LotjaGi3g1v0055100.1
n.a. Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|I1LVH4|I1LVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055100 LjG1.1_chr3 5739276 5746375 -
2 domain predictions
1 GO term
LotjaGi3g1v0055100.2
n.a. Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|I1LVH4|I1LVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055100 LjG1.1_chr3 5739980 5745187 -
2 domain predictions
1 GO term
LotjaGi3g1v0055100.3
n.a. Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|A0A151RMC0|A0A151RMC0_CAJCA Ligatin; Found in the gene: LotjaGi3g1v0055100 LjG1.1_chr3 5739980 5745187 -
2 domain predictions
1 GO term
LotjaGi3g1v0055100.4
n.a. Eukaryotic translation initiation factor 2D; TAIR: AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D; TrEMBL-Plants: tr|G7JKR1|G7JKR1_MEDTR Eukaryotic translation initiation factor SUI1-like protein; Found in the gene: LotjaGi3g1v0055100 LjG1.1_chr3 5739980 5745187 -
2 domain predictions
1 GO term
LotjaGi3g1v0298500.1
n.a. Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500 LjG1.1_chr3 62140854 62147005 -
2 domain predictions
1 GO term
LotjaGi3g1v0298500.2
n.a. Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500 LjG1.1_chr3 62140854 62147005 -
2 domain predictions
1 GO term
LotjaGi3g1v0298500.3
n.a. Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500 LjG1.1_chr3 62141164 62146897 -
2 domain predictions
1 GO term
LotjaGi3g1v0298500.4
n.a. Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500 LjG1.1_chr3 62141425 62146470 -
2 domain predictions
1 GO term
LotjaGi6g1v0357900.1
n.a. 60S ribosome subunit biogenesis protein NIP7 homolog; TAIR: AT4G15770.1 RNA binding protein; Swiss-Prot: sp|Q6DFH9|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog; TrEMBL-Plants: tr|V7CA90|V7CA90_PHAVU 60S ribosome subunit biogenesis protein NIP7 homolog; Found in the gene: LotjaGi6g1v0357900 LjG1.1_chr6 66997450 66999474 -
2 domain predictions
1 GO term