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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0381500 |
| Transcript ID | LotjaGi1g1v0381500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine--tRNA ligase; TAIR: AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein; Swiss-Prot: sp|F4IPY2|SYCM_ARATH Cysteine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2PHM9|A0A0B2PHM9_GLYSO Cysteine--tRNA ligase; Found in the gene: LotjaGi1g1v0381500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86450298..86456330) extracted from Lotus japonicus Gifu genome v1.2.
CGACATCTTTTTTCTAGTTCTAGACTCGGATCAACTCACCCGAGTGAACTCACTGGCGCCACGAACACCCATTGTCGATA ACGCGATAATGGGAACTCTATCTCTTCTGAAATGCTACAGACCCTTCTCCTCTATGGTTCTCCCTCACTCAGCAGCCATC TTCAGGCGCAACAACTTACCTTCTTTTCGCGCCGTCGCATCCTCCCCGCCGTTGACGGCGGAGAAGAATTTCGACGGCGA GAGTTTCCATTCGAAGCCGGAGGTGTGGCTGCACAACACCATGAGTAAGAGGAAGGAGCTTTTCAAACCCAAAGTGGAAT CCAAAGTCGGAATGTATGTCTGTGGAGTCACCGCTTATGATTTCAGTCATATTGGTCATGCTCGTGTTTATGTCAATTTC GATCTTCTTTACAGGTTCATCTCTATTTTGTCTCATTAGAGAAAAACCCAGTTAAAAAAATTTGATTTTTTCTATGCCCA TTATGATTTGAACCAGTTTGGTTTTAGTACTGATTGGTTTTGCTTCGTTTGACAATTAGGCAGATATTTTAAGCATTTGG GATTTGAAGTGTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGGTGAGTGTCTATTTGCTTTCTACTTGTACCCCT TGGTCTTTTTCCAATGATTTTCATTATTGGAAACTTAGCTTGAGATAATTGAGGCAATGCTCTTTGTTATTTAGTAATGC ATCTTTTAGCTTATTAGAGAAGTAATGAGTGATGTTAGTTACTGTTAGTAATTCTAACTTTGGTTTGTTTAAGTTAAGCT GTTTACTTATTGAAAAAATTTAATAGCTAGATTGCTGAAGAAACATAATCTTCAAAGTGCAATTTTTGAAACTAGGCACT TTATGTAACTTTACACTGAGTGGATGAGGGAAATGAGGTTCTAGAGTAATATTAGAAGGGTTCAATTTAATGATGTATCT CAATTCTGTCTATGTGGAAATGGGCTTAATCCATCTCACAATCTATATCTTACTTAGACAGTTAGACCCAGTTTGGGAGA GCTTATTTGAGCTTATCTGATAGCATAAGTGCTTGTGCAAGTGTTTGGGAGGCCTACCATAAGCTGTTTTGAGCTTATTT TCATAAGCTACTCAGAAGTCAGGACAGCTTATGAAGAAGAGCTTATGCTTATATATAGCTAATTTTCAATTTATTTTAAT AATTTTTTTAAAATAACTTATGAATAAGCGCTTATGGTTGCTTATGACCATAAGCGCTTAATTAAGTTGTTTTCCCAAAC GGGGCCTTAGTCTCTTTGCCATTCAATCATTGTCATATAAATATACTTTGAATCATTTAGAGGTTGGATCATACGAATTT TTTTTTAATAAGTTTTCAAAAATTTCAATTTTGATTATATCCTTTTCTTGTAAATGCAAAGTACCCACTGCTTTTTAATT GGTATTACAGGATCTTAGTCTGCGCTTTTCAAATTATGTAGATAATTGCTAGATCAAAGGAGTTAGGAGAAGACCCAATC AGTTTGAGCAGGCGTTTTTGTGAAGAGTTCTGTCAAGACATGGAGACTCTTAATTGTTTGCCTCCTTCTGAGCAACCAAA AGTCTCAGACCACATGCCCCAAATCATTGATATGATTGAGAAGGTATCTTTGCTGTCCGTTTTACTATTGGATCAAATGT AACCTGAGAAGATTAACAAATTCAATACTCTTGTTTTATATTCCATATATACGAAGGCTTACATGGATATATTATTGGTA TATGAAATGCTTCTCTTCGTTGTGTACTATTAATCTCTTCTATTAATTTGCTTAAGAAATGTAATGTTGACTCATTGCTA ATCAGTTAACATCCTTGTTCATAGATTCTTAATAATGGGTATGCCTACATCATTGATGGGGATGTATACTTTGATGTAAA AAAATTCCCAGAATATGGAAAATTATCCAGTCGAAATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGACACAA GGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGGTATTATATATTAGTGATAGATGATGATAATTATAATGATAATGT TGAATATATTGACCTCTTACATATTTCAATTTATTATTATGAAATACTTTAAAGTCTTAATTTAGTTGTAACATGTTTAT TGTGGATTTTCAATACTGTTCTGCAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGACTCCCTGGGGTCCTGGAAGACCT GGGTGGCATATTGAATGTAGTGCTATGAGTGCAACTTATCTTGGATACTCTTTTGACATCCACGGTGGAGGGATTGACCT TGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAGAAAAGTGATATAAGCCTATGGATGCACA ATGGTTTTGTCACCATTGACTCTGTGAAGATGTCTAAATCCCTGGGAAATTTTTTCACAATACGGCAGGTGACACCTTCC TTACGGTTTAAACTTATCCTGTTTAAAGTTTTAACATATTCTTTTTCTATTAGACGAGAAGTATAATACCATTCACTTTG GACCCATAGTCCACAGTTTCTTTTCGTTGTTGATTGCCATTCAAAGGGTGAAATTCTTATCACATAAACATTTTGTGTTA TTAGGTTGTAGATGTTTACCATCCTTTGGCTTTGAGATATTTTTTGATGGGCGCCCATTATAGATCTCCTATTAACTACT CTCATGTCCAGCTTGAAAGTGCTTCAGACCGTGTTTATTATATATACGAGGTACTGATTTTTTAGGCTAGAAATTACCTT CTTTCCTCTATGTGTGTGCGTATCTATGGAGTTTGCACTTTGCACACTTCATTTGTTATGCATTTACCTTATGGAAGTTC TTAACTGGGTTTGATTCTTTAGTTGTCGTTTTATTTGTTGTGTGGATGTATCTTGAAAATTATATGTTCTTGCAGACATT ACATGAATGTGAAAGGTTCCTCAATCAGCAAGATCGGACAGTTAGGAAGGATAACATCCCACCAGATACTTTGAGTATTA TTAATAAATTGCATGAAGTTTTTTTGACCTCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGCGGGACTGTCTGAC CCATTAAAATCAATTAATGACTTGCTGCATACTCGTAAGGTATGGTATCTTCTCAGATGTATAGGCATGGGAATGTATCT GCTCATTTGAAATTGTCTCCCTTCATAGATACTAAATAGGTGGGCCCTATCAAACTTAGTAAATGTTTATGAATGTCATG TGAAAATTTCACTTGAGAATCAATCCATTCCTGTCTTAAGTTTGGAAATGAGTAATTTTCAGGAATATGGTGTGCAATAG GTGTGGATTTTAGTTTAATATATTAAATTTAATTAAACTTCAGGATTTTGTTATACTTTCATCTTTGGTTCAAGCATATG TGTATTTCAATTTATTCCCCTCTAAGGTTCAACTAAAGAGTTTTGAGTGAACCTCTTCCTGGTTTTTGCAGCTAAGCTTC TATGATATGATCTCCAATTATATTGATTCAAACTTTCAGTTCTAGAAATGCAATTTTAAAATTTTACGTTATAGATGTAC TCATCTGAATTAATGCTAGTTGGTTCCAGCACAAATAAAAGATATCATGCAAATGCTGTTTATAACACTTCCAAGTTCAT AATTCTTTCAGGGGAAAAAACAACAATTTCGAATAGAATCGCTTGCAGCTTTGGAGAAGAGCATCGAGGATGTCCTTACT GTTTTAGGGCTTAAGCCTTCAAGCTATTCTGAGGTACGAATAGATTTGAAGTGATTGGTTTCTTTCACTGTTTTCTAATT TTTGTATTTGAGATATCAATACCCATTAATTTTATTGGGACTACAAATCTATGATTTATGTGTGCTGAAAGAGATGAAGC TTATCTCCTATATCCTTTTTTTATAGTGCGGGTAATTGTTATTTTTGAACTTTTCCAATCATTTTTTATGGGCTATTTGT TTTAGCATAGGTTAACTTCTGCTTTTTTCCAGAGTTTTCCACTCCTCAGTTGAGGGTTGGTTTGGTGATTTGGGACACTA AAATTTTCTAAATTTCCATTCAACTATGGCGTAGTGTGTTAAAGTTAAGTTAATGCGGCACTTTTTTTGTGGGTATCACC TATTGACCATTGAATTCAACATCAAGATTCATTCAGCAATCAATATACTACCACTTGGTCTCAAGTTCCTGCTAAGAAAG GGGAAGGGTGCCATAAAATTGTCCTTACATGATAATGGCATGTATATATTCTTGGGAATAGTGCTCAAATGATAGCTTTT AGGATGACATAGAAACGCAGCCAGCTTGCGAAGTTGTTGGGTTTTATAAGGATTTGTATAGAAACACACGGTGCATGTTT GAAAATCCTTTTACAATTTATTCTAAAGCAGAATCAATTCTCAGGAGTAGCATCTGGGTGTCTGATTCTGAAGAAAAAGA AACTGGTCTAAACATGCAATTGGCAGTGAATCTTATGGTGTAGAAAGGTGTTAATGGTTTGTTTCCCTGAATTTATGTGC AATATAACCAACATTCTTGTGCAATATGTTTTATCTTCCTTGTAACATGTAATCATCCTTTCATGCTGCAGATATTGGAG CAACTTAAGGAAAAAGCTTTAAAGCGCGCAAACATAACCGAAGATGAAGTGTTGAAGAAAATTGAAGGACGGGATGCTGC TAGATTGCAAAAGGAGTATGCAAAATCAGATGCAATAAGGAAGGATTTGGCTAATGTTGGCATTGCTCTTATGGACAGTC CAAATGGCACAACTTGGAGGCCTTCCATTCCTGTTCCACTTCAAGAGTTGCTCTTAGCCAAATCAGAATAAGTTACACTT GTTCCAAACCAAAACCAAGGAACTTAATCCTTAATACCTTCAAAACGTTAACGTTTTCATAGAAATAGCATTAGCTTAGT GCGGTTGTTTCGGCGACCAATATTGAACTAGGAGGATTTCAATTTTTGACCCAATTGGGCTTCTTTATATTCATTATGAC AACCAATTTGAGTCCGATTCAGTTTGATAAGAAGATGAAACCTTAGCAGATCCCTTAGGCGTCATTGTTTGTGTATTCAC TGTTTGAGGTGTCAATTTCTAGTCACGATTCAGTTCGTGTTTGTGGGGCCTCGGTGTGCGTAGGAAGGAGAGGCGGCGCT GCTCCTCGGGATGGGAAGTGAGGGCTACCATGGTCAGAGGTGCATGGCTAGTAGTTTCGTGGTGGATGAAGAAAGAGTGG CGGCTAGGGTGTCAATTTAAAAGATGGTAAGATGATGGTGGTGGATCATCCACATATTTGAAAGTATCTGCCCGTTGAAA AATTTCAAATTAACTTGAGATATGATCAAAATAACCTTTATATAAACTAGCTTTTGGGGTAGCGCTCTTAATGTGAATAT CCATAATTTCAAATTTTCCATTAGCTTTAAGCTGCTGATTTACCAGTAAAACAAAAAAGAAATTAATTTGGGTATTATGG AAATGGAAACATTACGAAATATAATGACAGGCTAAGTTCATTAGCCTAGAATTGATAATGTCCTACATAGGCATTATTAG TAATTAAAGTATCAATGATTATCAAACTATATTTGTTATATGATGATATCATTGATTCTTCAGGTTTGTTACAACCCTAA CCCTATGTATATATAATCATGATTCAACACCATTAATTTCAAAATGTTTGTGTTCATTTTGTGTTTCATATTTAGTATAT ATACATTACACAAATCTCATGCTCTAAATGAGTACAAACTGATCATAAAAGGTATGTTAATGTCCTGTTCTCATTTCTCA TTTGATTGCAGGAGCTACAAAAAACTTTCTCAAGCTTAACAAACTTGCAGAGAACACATGAATTAGGAAAGGGGAGCAGG GTCAGGGATGAAGAACGACGCGCGTAAATCTACTATTACGAATAGGGATGTTGAGTCTTTTAATTGTGAATGCTTCATAA GCGTTGGTTTTAATCTGATGGTTATCATTAAAT
CDS sequence (LotjaGi1g1v0381500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTCTATCTCTTCTGAAATGCTACAGACCCTTCTCCTCTATGGTTCTCCCTCACTCAGCAGCCATCTTCAGGCG CAACAACTTACCTTCTTTTCGCGCCGTCGCATCCTCCCCGCCGTTGACGGCGGAGAAGAATTTCGACGGCGAGAGTTTCC ATTCGAAGCCGGAGGTGTGGCTGCACAACACCATGAGTAAGAGGAAGGAGCTTTTCAAACCCAAAGTGGAATCCAAAGTC GGAATGTATGTCTGTGGAGTCACCGCTTATGATTTCAGTCATATTGGTCATGCTCGTGTTTATGTCAATTTCGATCTTCT TTACAGATATTTTAAGCATTTGGGATTTGAAGTGTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGATAATTGCTA GATCAAAGGAGTTAGGAGAAGACCCAATCAGTTTGAGCAGGCGTTTTTGTGAAGAGTTCTGTCAAGACATGGAGACTCTT AATTGTTTGCCTCCTTCTGAGCAACCAAAAGTCTCAGACCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAA TAATGGGTATGCCTACATCATTGATGGGGATGTATACTTTGATGTAAAAAAATTCCCAGAATATGGAAAATTATCCAGTC GAAATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGACACAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGG AAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGACTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGTAGTGC TATGAGTGCAACTTATCTTGGATACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTGTTTCCTCACCATGAAAATG AAATTGCTCAGAGTTGTGCTGCTTGTAAGAAAAGTGATATAAGCCTATGGATGCACAATGGTTTTGTCACCATTGACTCT GTGAAGATGTCTAAATCCCTGGGAAATTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCTTTGGCTTTGAGATA TTTTTTGATGGGCGCCCATTATAGATCTCCTATTAACTACTCTCATGTCCAGCTTGAAAGTGCTTCAGACCGTGTTTATT ATATATACGAGACATTACATGAATGTGAAAGGTTCCTCAATCAGCAAGATCGGACAGTTAGGAAGGATAACATCCCACCA GATACTTTGAGTATTATTAATAAATTGCATGAAGTTTTTTTGACCTCAATGTCTGATGATCTTCACACTCCGGTTGTATT GGCGGGACTGTCTGACCCATTAAAATCAATTAATGACTTGCTGCATACTCGTAAGGGGAAAAAACAACAATTTCGAATAG AATCGCTTGCAGCTTTGGAGAAGAGCATCGAGGATGTCCTTACTGTTTTAGGGCTTAAGCCTTCAAGCTATTCTGAGATA TTGGAGCAACTTAAGGAAAAAGCTTTAAAGCGCGCAAACATAACCGAAGATGAAGTGTTGAAGAAAATTGAAGGACGGGA TGCTGCTAGATTGCAAAAGGAGTATGCAAAATCAGATGCAATAAGGAAGGATTTGGCTAATGTTGGCATTGCTCTTATGG ACAGTCCAAATGGCACAACTTGGAGGCCTTCCATTCCTGTTCCACTTCAAGAGTTGCTCTTAGCCAAATCAGAATAA
Protein sequence (LotjaGi1g1v0381500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTLSLLKCYRPFSSMVLPHSAAIFRRNNLPSFRAVASSPPLTAEKNFDGESFHSKPEVWLHNTMSKRKELFKPKVESKV GMYVCGVTAYDFSHIGHARVYVNFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARSKELGEDPISLSRRFCEEFCQDMETL NCLPPSEQPKVSDHMPQIIDMIEKILNNGYAYIIDGDVYFDVKKFPEYGKLSSRNLEDNRAGERVAVDTRKKNPADFALW KSAKPGEPFWETPWGPGRPGWHIECSAMSATYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISLWMHNGFVTIDS VKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSHVQLESASDRVYYIYETLHECERFLNQQDRTVRKDNIPP DTLSIINKLHEVFLTSMSDDLHTPVVLAGLSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIEDVLTVLGLKPSSYSEI LEQLKEKALKRANITEDEVLKKIEGRDAARLQKEYAKSDAIRKDLANVGIALMDSPNGTTWRPSIPVPLQELLLAKSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 44 | 361 | 318 | 1.6E-132 | ||
| PANTHER | 48 | 548 | 501 | 2.1E-273 | – | |
| PANTHER | 48 | 548 | 501 | 2.1E-273 | ||
| Hamap | 59 | 544 | 486 | 36.08 | ||
| SUPERFAMILY | 59 | 368 | 310 | 1.08E-94 | – | |
| CDD | 60 | 361 | 302 | 4.07544E-107 | ||
| TIGRFAM | 61 | 542 | 482 | 5.4E-159 | ||
| Pfam | 72 | 368 | 297 | 8.3E-125 | ||
| PRINTS | 82 | 93 | 12 | 6.6E-29 | ||
| PRINTS | 118 | 127 | 10 | 6.6E-29 | ||
| PRINTS | 247 | 265 | 19 | 6.6E-29 | ||
| PRINTS | 278 | 299 | 22 | 6.6E-29 | ||
| Gene3D | 365 | 543 | 179 | 1.4E-26 | – | |
| SUPERFAMILY | 399 | 542 | 144 | 3.14E-24 | ||
| Coils | 478 | 498 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Cysteine-tRNA ligase activity | Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Cysteinyl-tRNA aminoacylation | The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. A cysteinyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a cysteine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi1g1v0381500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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