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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0381500 |
| Transcript ID | LotjaGi1g1v0381500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine--tRNA ligase; TAIR: AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein; Swiss-Prot: sp|F4IPY2|SYCM_ARATH Cysteine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KTG7|K7KTG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0381500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86450763..86456309) extracted from Lotus japonicus Gifu genome v1.2.
AGACTCGGATCAACTCACCCGAGTGAACTCACTGGCGCCACGAACACCCATTGTCGATAACGCGATAATGGGAACTCTAT CTCTTCTGAAATGCTACAGACCCTTCTCCTCTATGGTTCTCCCTCACTCAGCAGCCATCTTCAGGCGCAACAACTTACCT TCTTTTCGCGCCGTCGCATCCTCCCCGCCGTTGACGGCGGAGAAGAATTTCGACGGCGAGAGTTTCCATTCGAAGCCGGA GGTGTGGCTGCACAACACCATGAGTAAGAGGAAGGAGCTTTTCAAACCCAAAGTGGAATCCAAAGTCGGAATGTATGTCT GTGGAGTCACCGCTTATGATTTCAGTCATATTGGTCATGCTCGTGTTTATGTCAATTTCGATCTTCTTTACAGGTTCATC TCTATTTTGTCTCATTAGAGAAAAACCCAGTTAAAAAAATTTGATTTTTTCTATGCCCATTATGATTTGAACCAGTTTGG TTTTAGTACTGATTGGTTTTGCTTCGTTTGACAATTAGGCAGATATTTTAAGCATTTGGGATTTGAAGTGTGTTATGTTC GCAATTTTACTGATGTAGATGACAAGGTGAGTGTCTATTTGCTTTCTACTTGTACCCCTTGGTCTTTTTCCAATGATTTT CATTATTGGAAACTTAGCTTGAGATAATTGAGGCAATGCTCTTTGTTATTTAGTAATGCATCTTTTAGCTTATTAGAGAA GTAATGAGTGATGTTAGTTACTGTTAGTAATTCTAACTTTGGTTTGTTTAAGTTAAGCTGTTTACTTATTGAAAAAATTT AATAGCTAGATTGCTGAAGAAACATAATCTTCAAAGTGCAATTTTTGAAACTAGGCACTTTATGTAACTTTACACTGAGT GGATGAGGGAAATGAGGTTCTAGAGTAATATTAGAAGGGTTCAATTTAATGATGTATCTCAATTCTGTCTATGTGGAAAT GGGCTTAATCCATCTCACAATCTATATCTTACTTAGACAGTTAGACCCAGTTTGGGAGAGCTTATTTGAGCTTATCTGAT AGCATAAGTGCTTGTGCAAGTGTTTGGGAGGCCTACCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGAAGTCA GGACAGCTTATGAAGAAGAGCTTATGCTTATATATAGCTAATTTTCAATTTATTTTAATAATTTTTTTAAAATAACTTAT GAATAAGCGCTTATGGTTGCTTATGACCATAAGCGCTTAATTAAGTTGTTTTCCCAAACGGGGCCTTAGTCTCTTTGCCA TTCAATCATTGTCATATAAATATACTTTGAATCATTTAGAGGTTGGATCATACGAATTTTTTTTTAATAAGTTTTCAAAA ATTTCAATTTTGATTATATCCTTTTCTTGTAAATGCAAAGTACCCACTGCTTTTTAATTGGTATTACAGGATCTTAGTCT GCGCTTTTCAAATTATGTAGATAATTGCTAGATCAAAGGAGTTAGGAGAAGACCCAATCAGTTTGAGCAGGCGTTTTTGT GAAGAGTTCTGTCAAGACATGGAGACTCTTAATTGTTTGCCTCCTTCTGAGCAACCAAAAGTCTCAGACCACATGCCCCA AATCATTGATATGATTGAGAAGGTATCTTTGCTGTCCGTTTTACTATTGGATCAAATGTAACCTGAGAAGATTAACAAAT TCAATACTCTTGTTTTATATTCCATATATACGAAGGCTTACATGGATATATTATTGGTATATGAAATGCTTCTCTTCGTT GTGTACTATTAATCTCTTCTATTAATTTGCTTAAGAAATGTAATGTTGACTCATTGCTAATCAGTTAACATCCTTGTTCA TAGATTCTTAATAATGGGTATGCCTACATCATTGATGGGGATGTATACTTTGATGTAAAAAAATTCCCAGAATATGGAAA ATTATCCAGTCGAAATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGACACAAGGAAGAAAAATCCTGCTGATT TTGCTCTTTGGAAGGTATTATATATTAGTGATAGATGATGATAATTATAATGATAATGTTGAATATATTGACCTCTTACA TATTTCAATTTATTATTATGAAATACTTTAAAGTCTTAATTTAGTTGTAACATGTTTATTGTGGATTTTCAATACTGTTC TGCAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGACTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGTAGT GCTATGAGTGCAACTTATCTTGGATACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTGTTTCCTCACCATGAAAA TGAAATTGCTCAGAGTTGTGCTGCTTGTAAGAAAAGTGATATAAGCCTATGGATGCACAATGGTTTTGTCACCATTGACT CTGTGAAGATGTCTAAATCCCTGGGAAATTTTTTCACAATACGGCAGGTGACACCTTCCTTACGGTTTAAACTTATCCTG TTTAAAGTTTTAACATATTCTTTTTCTATTAGACGAGAAGTATAATACCATTCACTTTGGACCCATAGTCCACAGTTTCT TTTCGTTGTTGATTGCCATTCAAAGGGTGAAATTCTTATCACATAAACATTTTGTGTTATTAGGTTGTAGATGTTTACCA TCCTTTGGCTTTGAGATATTTTTTGATGGGCGCCCATTATAGATCTCCTATTAACTACTCTCATGTCCAGCTTGAAAGTG CTTCAGACCGTGTTTATTATATATACGAGGTACTGATTTTTTAGGCTAGAAATTACCTTCTTTCCTCTATGTGTGTGCGT ATCTATGGAGTTTGCACTTTGCACACTTCATTTGTTATGCATTTACCTTATGGAAGTTCTTAACTGGGTTTGATTCTTTA GTTGTCGTTTTATTTGTTGTGTGGATGTATCTTGAAAATTATATGTTCTTGCAGACATTACATGAATGTGAAAGGTTCCT CAATCAGCAAGATCGGACAGTTAGGAAGGATAACATCCCACCAGATACTTTGAGTATTATTAATAAATTGCATGAAGTTT TTTTGACCTCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGCGGGACTGTCTGACCCATTAAAATCAATTAATGAC TTGCTGCATACTCGTAAGGTATGGTATCTTCTCAGATGTATAGGCATGGGAATGTATCTGCTCATTTGAAATTGTCTCCC TTCATAGATACTAAATAGGTGGGCCCTATCAAACTTAGTAAATGTTTATGAATGTCATGTGAAAATTTCACTTGAGAATC AATCCATTCCTGTCTTAAGTTTGGAAATGAGTAATTTTCAGGAATATGGTGTGCAATAGGTGTGGATTTTAGTTTAATAT ATTAAATTTAATTAAACTTCAGGATTTTGTTATACTTTCATCTTTGGTTCAAGCATATGTGTATTTCAATTTATTCCCCT CTAAGGTTCAACTAAAGAGTTTTGAGTGAACCTCTTCCTGGTTTTTGCAGCTAAGCTTCTATGATATGATCTCCAATTAT ATTGATTCAAACTTTCAGTTCTAGAAATGCAATTTTAAAATTTTACGTTATAGATGTACTCATCTGAATTAATGCTAGTT GGTTCCAGCACAAATAAAAGATATCATGCAAATGCTGTTTATAACACTTCCAAGTTCATAATTCTTTCAGGGGAAAAAAC AACAATTTCGAATAGAATCGCTTGCAGCTTTGGAGAAGAGCATCGAGGATGTCCTTACTGTTTTAGGGCTTAAGCCTTCA AGCTATTCTGAGGTACGAATAGATTTGAAGTGATTGGTTTCTTTCACTGTTTTCTAATTTTTGTATTTGAGATATCAATA CCCATTAATTTTATTGGGACTACAAATCTATGATTTATGTGTGCTGAAAGAGATGAAGCTTATCTCCTATATCCTTTTTT TATAGTGCGGGTAATTGTTATTTTTGAACTTTTCCAATCATTTTTTATGGGCTATTTGTTTTAGCATAGGTTAACTTCTG CTTTTTTCCAGAGTTTTCCACTCCTCAGTTGAGGGTTGGTTTGGTGATTTGGGACACTAAAATTTTCTAAATTTCCATTC AACTATGGCGTAGTGTGTTAAAGTTAAGTTAATGCGGCACTTTTTTTGTGGGTATCACCTATTGACCATTGAATTCAACA TCAAGATTCATTCAGCAATCAATATACTACCACTTGGTCTCAAGTTCCTGCTAAGAAAGGGGAAGGGTGCCATAAAATTG TCCTTACATGATAATGGCATGTATATATTCTTGGGAATAGTGCTCAAATGATAGCTTTTAGGATGACATAGAAACGCAGC CAGCTTGCGAAGTTGTTGGGTTTTATAAGGATTTGTATAGAAACACACGGTGCATGTTTGAAAATCCTTTTACAATTTAT TCTAAAGCAGAATCAATTCTCAGGAGTAGCATCTGGGTGTCTGATTCTGAAGAAAAAGAAACTGGTCTAAACATGCAATT GGCAGTGAATCTTATGGTGTAGAAAGGTGTTAATGGTTTGTTTCCCTGAATTTATGTGCAATATAACCAACATTCTTGTG CAATATGTTTTATCTTCCTTGTAACATGTAATCATCCTTTCATGCTGCAGATATTGGAGCAACTTAAGGAAAAAGCTTTA AAGCGCGCAAACATAACCGAAGATGAAGTGTTGAAGAAAATTGAAGGACGGGATGCTGCTAGATTGCAAAAGGAGTATGC AAAATCAGATGCAATAAGGAAGGATTTGGCTAATGTTGGCATTGCTCTTATGGACAGTCCAAATGGCACAACTTGGAGGC CTTCCATTCCTGTTCCACTTCAAGAGTTGCTCTTAGCCAAATCAGAATAAGTTACACTTGTTCCAAACCAAAACCAAGGA ACTTAATCCTTAATACCTTCAAAACGTTAACGTTTTCATAGAAATAGCATTAGCTTAGTGCGGTTGTTTCGGCGACCAAT ATTGAACTAGGAGGATTTCAATTTTTGACCCAATTGGGCTTCTTTATATTCATTATGACAACCAATTTGAGTCCGATTCA GTTTGATAAGAAGATGAAACCTTAGCAGATCCCTTAGGCGTCATTGTTTGTGTATTCACTGTTTGAGGTGTCAATTTCTA GTCACGATTCAGTTCGTGTTTGTGGGGCCTCGGTGTGCGTAGGAAGGAGAGGCGGCGCTGCTCCTCGGGATGGGAAGTGA GGGCTACCATGGTCAGAGGTGCATGGCTAGTAGTTTCGTGGTGGATGAAGAAAGAGTGGCGGCTAGGGTGTCAATTTAAA AGATGGTAAGATGATGGTGGTGGATCATCCACATATTTGAAAGTATCTGCCCGTTGAAAAATTTCAAATTAACTTGAGAT ATGATCAAAATAACCTTTATATAAACTAGCTTTTGGGGTAGCGCTCTTAATGTGAATATCCATAATTTCAAATTTTCCAT TAGCTTTAAGCTGCTGATTTACCAGTAAAACAAAAAAGAAATTAATTTGGGTATTATGGAAATGGAAACATTACGAAATA TAATGACAGGCTAAGTTCATTAGCCTA
CDS sequence (LotjaGi1g1v0381500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTGGAGTCACCGCTTATGATTTCAGTCATATTGGTCATGCTCGTGTTTATGTCAATTTCGATCTTCTTTACAGG CAGATATTTTAAGCATTTGGGATTTGAAGTGTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGATAATTGCTAGAT CAAAGGAGTTAGGAGAAGACCCAATCAGTTTGAGCAGGCGTTTTTGTGAAGAGTTCTGTCAAGACATGGAGACTCTTAAT TGTTTGCCTCCTTCTGAGCAACCAAAAGTCTCAGACCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAA TGGGTATGCCTACATCATTGATGGGGATGTATACTTTGATGTAAAAAAATTCCCAGAATATGGAAAATTATCCAGTCGAA ATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGACACAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAG TCTGCAAAGCCAGGAGAGCCATTTTGGGAGACTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGTAGTGCTAT GAGTGCAACTTATCTTGGATACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTGTTTCCTCACCATGAAAATGAAA TTGCTCAGAGTTGTGCTGCTTGTAAGAAAAGTGATATAAGCCTATGGATGCACAATGGTTTTGTCACCATTGACTCTGTG AAGATGTCTAAATCCCTGGGAAATTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCTTTGGCTTTGAGATATTT TTTGATGGGCGCCCATTATAGATCTCCTATTAACTACTCTCATGTCCAGCTTGAAAGTGCTTCAGACCGTGTTTATTATA TATACGAGACATTACATGAATGTGAAAGGTTCCTCAATCAGCAAGATCGGACAGTTAGGAAGGATAACATCCCACCAGAT ACTTTGAGTATTATTAATAAATTGCATGAAGTTTTTTTGACCTCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGC GGGACTGTCTGACCCATTAAAATCAATTAATGACTTGCTGCATACTCGTAAGGGGAAAAAACAACAATTTCGAATAGAAT CGCTTGCAGCTTTGGAGAAGAGCATCGAGGATGTCCTTACTGTTTTAGGGCTTAAGCCTTCAAGCTATTCTGAGATATTG GAGCAACTTAAGGAAAAAGCTTTAAAGCGCGCAAACATAACCGAAGATGAAGTGTTGAAGAAAATTGAAGGACGGGATGC TGCTAGATTGCAAAAGGAGTATGCAAAATCAGATGCAATAAGGAAGGATTTGGCTAATGTTGGCATTGCTCTTATGGACA GTCCAAATGGCACAACTTGGAGGCCTTCCATTCCTGTTCCACTTCAAGAGTTGCTCTTAGCCAAATCAGAATAA
Protein sequence (LotjaGi1g1v0381500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVESPLMISVILVMLVFMSISIFFTGRYFKHLGFEVCYVRNFTDVDDKIIARSKELGEDPISLSRRFCEEFCQDMETLN CLPPSEQPKVSDHMPQIIDMIEKILNNGYAYIIDGDVYFDVKKFPEYGKLSSRNLEDNRAGERVAVDTRKKNPADFALWK SAKPGEPFWETPWGPGRPGWHIECSAMSATYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISLWMHNGFVTIDSV KMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSHVQLESASDRVYYIYETLHECERFLNQQDRTVRKDNIPPD TLSIINKLHEVFLTSMSDDLHTPVVLAGLSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIEDVLTVLGLKPSSYSEIL EQLKEKALKRANITEDEVLKKIEGRDAARLQKEYAKSDAIRKDLANVGIALMDSPNGTTWRPSIPVPLQELLLAKSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 463 | 463 | 29.854 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Gene3D | 21 | 280 | 260 | 4.3E-110 | ||
| TIGRFAM | 25 | 461 | 437 | 6.3E-137 | ||
| Pfam | 26 | 287 | 262 | 1.0E-107 | ||
| Phobius | 26 | 477 | 452 | - | – | |
| SUPERFAMILY | 27 | 287 | 261 | 6.14E-79 | – | |
| PANTHER | 28 | 467 | 440 | 2.2E-236 | ||
| PANTHER | 28 | 467 | 440 | 2.2E-236 | – | |
| PRINTS | 37 | 46 | 10 | 1.4E-23 | ||
| PRINTS | 166 | 184 | 19 | 1.4E-23 | ||
| PRINTS | 197 | 218 | 22 | 1.4E-23 | ||
| Gene3D | 284 | 462 | 179 | 1.0E-26 | – | |
| SUPERFAMILY | 318 | 461 | 144 | 2.35E-24 | ||
| Coils | 397 | 417 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Cysteine-tRNA ligase activity | Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Cysteinyl-tRNA aminoacylation | The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. A cysteinyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a cysteine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi1g1v0381500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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