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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0481200 |
Transcript ID | LotjaGi1g1v0481200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 1-aminocyclopropane-1-carboxylate synthase; TAIR: AT3G61510.1 ACC synthase 1; Swiss-Prot: sp|Q9MB95|1A11_PRUMU 1-aminocyclopropane-1-carboxylate synthase 1; TrEMBL-Plants: tr|I1N3V1|I1N3V1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99411362..99412896) extracted from Lotus japonicus Gifu genome v1.2.
CTGTAATCTGTCCAAGAAAATATTTGAATGGTAATTAACTCATATTTTGACTATTTGAAGAAGTAGCAAAGTTAATAAAT ATCACTTACCAAAATCATGTGTCTACTAATACAAGAATCAACCAAGAACATGTTTCATTTGACTCATAGTTATGCTTCTT ATAAATCATGAAATGTGATATTTAGAAATAATTTACAAATAAAGCTTTTAATTTGTGAACTAAATTTTTCTTGATCACGC GCGGATGAACACTAAATTTTTTTCTTTTACAGATTCGTGCGTGACTTGTGCTGGAGAACCGGAGTGCAACTAATTCCTGT CCAATGTGACAGCTCCAACAACTTCATGATAACAAGAGAAGCTCTTGAAGCAGCATATAACAAAGCAAAAGCCCACAACA TCAATGTGAAGGGTTTGCTCATCACAAACCCTTCAAATCCTCTTGGAACCACGGTGGACCGCGAAACACTGAAGAGCATC GTGCGCTTCATCAATGAAAAGAACATCCATTTTGTATGCGATGAAATCTACGCGGCCACAGTTTTCAACACTCCAACCTT TGTGAGTGTCGCCGAAGTAATCCAAGAAATCGAGCATTGCAAACGCAATCTCATTCACATTATCTATAGTTTATCCAAAG ACATGGGGCTTCCAGGTTTTAGAGTTGGATTGGTTTATTCATACAATGATGAAGTAGTGAACTGTGGAAGAAAAATGTCT AGCTTTGGATTAGTGTCATCACAGACACAGCATTTTTTGGCTGCGATGCTTGCAGATGAGGAGTTTGTGGAAAGGTTTCT TAAAGAAAGCGCGAAGAGGCTGAGGCTGAGGCATGAGTACTTCACGAAAGGGCTTGAGAAGGTGAACATTACTTGCTTGC CAAGCAACGCGGGGCTTTTCTGCTGGATGAATCTGAGGGGTTTGCTGAAGAAACACACGTTTGAAGGCGAGATGGTGTTG TGGCGCATGATTGTGAATGAGGTGAAGCTCAATGTTTCACCGGGGTCGGCTTTTAACTGCTCTGAGCCTGGTTGGTTCAG GGTTTGCTTTGCGAACATGGATCATGAAACTGTGGAGGTTGCGCTCAAGAGGATAAGAGCGTTTGTCGGGAAAGAAATTG GGGTGGAACGCAAACGTTGGAAGAGCAACCTTAGGCTCAGTTTCTCAACAAGGAGATTTGATGAGACTGTTATCATGTCT CCTCACATGATGTCTCCTCATTCACCTCTTGTCAGAGCAACCACTTAATTGGATCAGATCAGCAACCCCTAGTATTGAAT CTTGTCTTACTTCAGGTGTTAATTATATAGATGCTTTGTGTTTCCAATTAATTTAGCTATGATTTTTTTAATTACCAATC AATGTAGATTGTGAATGCATACATCATTTATGTAATCATAGGAGTGAATAACATGTTTTACATTTGTGTGTTGTTGTCTG AGTATGTGGACAGCTAACCCTGTTGTAGTTAGGTAACCAACATGGTTTGATCAGTTCAAGTGATATATATTATGATTGTG AAAGATGTTCCCCTA
CDS sequence (LotjaGi1g1v0481200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACAAGAGAAGCTCTTGAAGCAGCATATAACAAAGCAAAAGCCCACAACATCAATGTGAAGGGTTTGCTCATCAC AAACCCTTCAAATCCTCTTGGAACCACGGTGGACCGCGAAACACTGAAGAGCATCGTGCGCTTCATCAATGAAAAGAACA TCCATTTTGTATGCGATGAAATCTACGCGGCCACAGTTTTCAACACTCCAACCTTTGTGAGTGTCGCCGAAGTAATCCAA GAAATCGAGCATTGCAAACGCAATCTCATTCACATTATCTATAGTTTATCCAAAGACATGGGGCTTCCAGGTTTTAGAGT TGGATTGGTTTATTCATACAATGATGAAGTAGTGAACTGTGGAAGAAAAATGTCTAGCTTTGGATTAGTGTCATCACAGA CACAGCATTTTTTGGCTGCGATGCTTGCAGATGAGGAGTTTGTGGAAAGGTTTCTTAAAGAAAGCGCGAAGAGGCTGAGG CTGAGGCATGAGTACTTCACGAAAGGGCTTGAGAAGGTGAACATTACTTGCTTGCCAAGCAACGCGGGGCTTTTCTGCTG GATGAATCTGAGGGGTTTGCTGAAGAAACACACGTTTGAAGGCGAGATGGTGTTGTGGCGCATGATTGTGAATGAGGTGA AGCTCAATGTTTCACCGGGGTCGGCTTTTAACTGCTCTGAGCCTGGTTGGTTCAGGGTTTGCTTTGCGAACATGGATCAT GAAACTGTGGAGGTTGCGCTCAAGAGGATAAGAGCGTTTGTCGGGAAAGAAATTGGGGTGGAACGCAAACGTTGGAAGAG CAACCTTAGGCTCAGTTTCTCAACAAGGAGATTTGATGAGACTGTTATCATGTCTCCTCACATGATGTCTCCTCATTCAC CTCTTGTCAGAGCAACCACTTAA
Protein sequence (LotjaGi1g1v0481200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITREALEAAYNKAKAHNINVKGLLITNPSNPLGTTVDRETLKSIVRFINEKNIHFVCDEIYAATVFNTPTFVSVAEVIQ EIEHCKRNLIHIIYSLSKDMGLPGFRVGLVYSYNDEVVNCGRKMSSFGLVSSQTQHFLAAMLADEEFVERFLKESAKRLR LRHEYFTKGLEKVNITCLPSNAGLFCWMNLRGLLKKHTFEGEMVLWRMIVNEVKLNVSPGSAFNCSEPGWFRVCFANMDH ETVEVALKRIRAFVGKEIGVERKRWKSNLRLSFSTRRFDETVIMSPHMMSPHSPLVRATT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 286 | 285 | 7.5E-167 | – | |
Gene3D | 2 | 144 | 143 | 1.6E-96 | ||
Pfam | 2 | 250 | 249 | 1.8E-69 | ||
PANTHER | 2 | 286 | 285 | 7.5E-167 | – | |
SUPERFAMILY | 2 | 255 | 254 | 2.55E-70 | ||
CDD | 14 | 252 | 239 | 4.06577E-41 | – | |
PRINTS | 18 | 42 | 25 | 1.0E-55 | – | |
PRINTS | 54 | 77 | 24 | 1.0E-55 | – | |
PRINTS | 89 | 113 | 25 | 1.0E-55 | – | |
ProSitePatterns | 95 | 108 | 14 | - | ||
PRINTS | 121 | 144 | 24 | 1.0E-55 | – | |
Gene3D | 145 | 249 | 105 | 1.6E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi1g1v0481200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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