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LotjaGi1g1v0481200.2

Overview

Field Value
Gene ID LotjaGi1g1v0481200
Transcript ID LotjaGi1g1v0481200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 1-aminocyclopropane-1-carboxylate synthase; TAIR: AT3G61510.1 ACC synthase 1; Swiss-Prot: sp|Q9MB95|1A11_PRUMU 1-aminocyclopropane-1-carboxylate synthase 1; TrEMBL-Plants: tr|I1N3V1|I1N3V1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99411362..99412896) extracted from Lotus japonicus Gifu genome v1.2.

CTGTAATCTGTCCAAGAAAATATTTGAATGGTAATTAACTCATATTTTGACTATTTGAAGAAGTAGCAAAGTTAATAAAT ATCACTTACCAAAATCATGTGTCTACTAATACAAGAATCAACCAAGAACATGTTTCATTTGACTCATAGTTATGCTTCTT ATAAATCATGAAATGTGATATTTAGAAATAATTTACAAATAAAGCTTTTAATTTGTGAACTAAATTTTTCTTGATCACGC GCGGATGAACACTAAATTTTTTTCTTTTACAGATTCGTGCGTGACTTGTGCTGGAGAACCGGAGTGCAACTAATTCCTGT CCAATGTGACAGCTCCAACAACTTCATGATAACAAGAGAAGCTCTTGAAGCAGCATATAACAAAGCAAAAGCCCACAACA TCAATGTGAAGGGTTTGCTCATCACAAACCCTTCAAATCCTCTTGGAACCACGGTGGACCGCGAAACACTGAAGAGCATC GTGCGCTTCATCAATGAAAAGAACATCCATTTTGTATGCGATGAAATCTACGCGGCCACAGTTTTCAACACTCCAACCTT TGTGAGTGTCGCCGAAGTAATCCAAGAAATCGAGCATTGCAAACGCAATCTCATTCACATTATCTATAGTTTATCCAAAG ACATGGGGCTTCCAGGTTTTAGAGTTGGATTGGTTTATTCATACAATGATGAAGTAGTGAACTGTGGAAGAAAAATGTCT AGCTTTGGATTAGTGTCATCACAGACACAGCATTTTTTGGCTGCGATGCTTGCAGATGAGGAGTTTGTGGAAAGGTTTCT TAAAGAAAGCGCGAAGAGGCTGAGGCTGAGGCATGAGTACTTCACGAAAGGGCTTGAGAAGGTGAACATTACTTGCTTGC CAAGCAACGCGGGGCTTTTCTGCTGGATGAATCTGAGGGGTTTGCTGAAGAAACACACGTTTGAAGGCGAGATGGTGTTG TGGCGCATGATTGTGAATGAGGTGAAGCTCAATGTTTCACCGGGGTCGGCTTTTAACTGCTCTGAGCCTGGTTGGTTCAG GGTTTGCTTTGCGAACATGGATCATGAAACTGTGGAGGTTGCGCTCAAGAGGATAAGAGCGTTTGTCGGGAAAGAAATTG GGGTGGAACGCAAACGTTGGAAGAGCAACCTTAGGCTCAGTTTCTCAACAAGGAGATTTGATGAGACTGTTATCATGTCT CCTCACATGATGTCTCCTCATTCACCTCTTGTCAGAGCAACCACTTAATTGGATCAGATCAGCAACCCCTAGTATTGAAT CTTGTCTTACTTCAGGTGTTAATTATATAGATGCTTTGTGTTTCCAATTAATTTAGCTATGATTTTTTTAATTACCAATC AATGTAGATTGTGAATGCATACATCATTTATGTAATCATAGGAGTGAATAACATGTTTTACATTTGTGTGTTGTTGTCTG AGTATGTGGACAGCTAACCCTGTTGTAGTTAGGTAACCAACATGGTTTGATCAGTTCAAGTGATATATATTATGATTGTG AAAGATGTTCCCCTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0481200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAACAAGAGAAGCTCTTGAAGCAGCATATAACAAAGCAAAAGCCCACAACATCAATGTGAAGGGTTTGCTCATCAC AAACCCTTCAAATCCTCTTGGAACCACGGTGGACCGCGAAACACTGAAGAGCATCGTGCGCTTCATCAATGAAAAGAACA TCCATTTTGTATGCGATGAAATCTACGCGGCCACAGTTTTCAACACTCCAACCTTTGTGAGTGTCGCCGAAGTAATCCAA GAAATCGAGCATTGCAAACGCAATCTCATTCACATTATCTATAGTTTATCCAAAGACATGGGGCTTCCAGGTTTTAGAGT TGGATTGGTTTATTCATACAATGATGAAGTAGTGAACTGTGGAAGAAAAATGTCTAGCTTTGGATTAGTGTCATCACAGA CACAGCATTTTTTGGCTGCGATGCTTGCAGATGAGGAGTTTGTGGAAAGGTTTCTTAAAGAAAGCGCGAAGAGGCTGAGG CTGAGGCATGAGTACTTCACGAAAGGGCTTGAGAAGGTGAACATTACTTGCTTGCCAAGCAACGCGGGGCTTTTCTGCTG GATGAATCTGAGGGGTTTGCTGAAGAAACACACGTTTGAAGGCGAGATGGTGTTGTGGCGCATGATTGTGAATGAGGTGA AGCTCAATGTTTCACCGGGGTCGGCTTTTAACTGCTCTGAGCCTGGTTGGTTCAGGGTTTGCTTTGCGAACATGGATCAT GAAACTGTGGAGGTTGCGCTCAAGAGGATAAGAGCGTTTGTCGGGAAAGAAATTGGGGTGGAACGCAAACGTTGGAAGAG CAACCTTAGGCTCAGTTTCTCAACAAGGAGATTTGATGAGACTGTTATCATGTCTCCTCACATGATGTCTCCTCATTCAC CTCTTGTCAGAGCAACCACTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0481200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MITREALEAAYNKAKAHNINVKGLLITNPSNPLGTTVDRETLKSIVRFINEKNIHFVCDEIYAATVFNTPTFVSVAEVIQ EIEHCKRNLIHIIYSLSKDMGLPGFRVGLVYSYNDEVVNCGRKMSSFGLVSSQTQHFLAAMLADEEFVERFLKESAKRLR LRHEYFTKGLEKVNITCLPSNAGLFCWMNLRGLLKKHTFEGEMVLWRMIVNEVKLNVSPGSAFNCSEPGWFRVCFANMDH ETVEVALKRIRAFVGKEIGVERKRWKSNLRLSFSTRRFDETVIMSPHMMSPHSPLVRATT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43795:SF58
2 286 285 7.5E-167 –
Gene3D
G3DSA:3.40.640.10
2 144 143 1.6E-96
IPR015421
Pfam
PF00155
2 250 249 1.8E-69
IPR004839
PANTHER
PTHR43795
2 286 285 7.5E-167 –
SUPERFAMILY
SSF53383
2 255 254 2.55E-70
IPR015424
CDD
cd00609
14 252 239 4.06577E-41 –
PRINTS
PR00753
18 42 25 1.0E-55 –
PRINTS
PR00753
54 77 24 1.0E-55 –
PRINTS
PR00753
89 113 25 1.0E-55 –
ProSitePatterns
PS00105
95 108 14 -
IPR004838
PRINTS
PR00753
121 144 24 1.0E-55 –
Gene3D
G3DSA:3.90.1150.10
145 249 105 1.6E-96
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0481200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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