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LotjaGi1g1v0486000.2

Overview

Field Value
Gene ID LotjaGi1g1v0486000
Transcript ID LotjaGi1g1v0486000.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|K7WIZ6|RIBRX_MAIZE Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|I1N3Z5|I1N3Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99913097..99917248) extracted from Lotus japonicus Gifu genome v1.2.

CTATCGTGTTTCACCCCCATCATCGCGAAACCTCCTTCATCCATTATCTGCAAATGCACCAAACCCTCCACCAACCACGC GCTCGACGCCGCGTACATCAAACGCGCCGCCCTCATCGCCGACAAATCCGCCGGTTTCACTGCACCCCACCCCAACTTCG GCTGCGTCATCGCCACCCCTTCCGGTGATGTCGCCGGCGAGGGATACCTCTACGCGGAGGGAACCACTCCTGCCGAGGTG CAGGCCGTCACCGCCGCCGGAGAGCGATGTCGCGGCGCCACTGCTTACCTCAACATGGAACCCGGCGACTGCCACGCTGA CAGTGCTGCTGTGTCTGCTCTGCTTCAGGTTTCTTCTTCGCATTCGTTTTCCGAATTCGTGTACCATGTTGATTTGGGGG GGTGCGTTTTTTTGACTCTAGTTTGTGTTTGTAGTTGACAAAATGATCCTGTATGTGAAACCAAACCAGGGAGGGGTGAA GAGAGTTGTCATTGGAATGAGGCATCCATTGCAGCATCATCGGGGCAATGCCGTGCGTGCACTCAGAGGTGAAGGACTGC AAGTTGATCTTCTTGGAGAGGATCTCACTAGTAAGCTTGTTGAGGTGTGTAGTGCAATCTGCAATGCATCCATGCGTTTT AATTTTTGGGTTTCATTTCAATTCAAGATATTTGTATGGATCTCATTTGGGTTGTTCGATTCGTTGTTATAGCATGTTTG TTTCCACAGTGTAATGATTTAGAATCAATTTTTGACTAGAAGCGAAGAAGTCTTAGCTTTTGAGTAAATGTTTCTGTGCA CATTGTGAAACCAAACATGCAGTTATCTCAGTGTTGTCCAATAGCGGATATCGCGGCGCTATAGCGTAGTGCTATGAGGG CTCGCTGCTATCCGCTATTTTCTGCTCTGAGGGCTTGACATAGCAGATTTTTGGCTTTCTGCTATTTTCCGCAGACTGAC TTATCTTTATATTCATTGACTTTAATTGCTATGATCTTTGTTTCATGTACAGGATGCCCAGAAAGAATGTCTTCTTGTCA ATGCCCCTTTGATTTGTAGAGCTACTTCGCGCATTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGTGAGAAT TCTATTCATCCTCCCCCCTCCCTCTTTTTCATTCCCTTTCTTTAATGAATTGGAATATAGAACCTCAAAAGTGCACTATA CTGGTATGTGTATCTATCTTGTCTTGTTACCTTTCTTTTGCTACATCAGGAAAAATTGCTGCTAGCTCTGGCCATGCATC ATGGATAAGCAGCAAAGAATCTAGAAATCTAGTTTTTGATCTGCGAGGTAGAAGTGATGCGGTTATTGTGGGAGGAAATA CAGTTCGAAAGGACAGTGAGTGTCATCATTACTATCTTTCCTTGGAAATTCAACCAGAACGAAATATTGTGGTCAGAATT TGAATTTTTTTACATTCTTTCCTTTGAAATTCAACCAGATCCAAGACTGACTGTCAGACACGGAGGTGGGCGTATGCCTG TTCGCATTGTAATGTCCCAGACTCTCAATCTTCCAGATGAAGCGCATCTATGGGACACTTCTGAGGTTTCTACCATGGTT GTAACACAGAGGGGTGCAAGGAGGAGTTTCCAGAAGCTGCTTGCATCTAAAGGAGTTGAAGTAGTGGAGTTTGACATGTT AAATTCCCAAGATGTTATGGAGTACTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAATGTGGAGGAACATTGGCTG CCTCTGCTATTTCATCCGGAGTAATTCACAAGGTTCTATTTTTCCTATTCCTTTTCTTTCACTGAGAAATTTAAATGAAG TTCCAGTTGTTATTAGCGTAATTTACTGTTGTTTAATATATGAAGCCTAGATACATAACACAAGACAGGCAAGGTATGGC GTGGAAATGGAGATATGAAAAATTCTTAAAATCTCAGCATTCTAGAGACATTGGTATTTTGATTAACATAATCATATCAG TAGTTGATGATTGCGATTCATAAAAAGATGCTAGTAATCATAACAATAAAATAGACATATCTTTCCCTTGTCCATATCGA AATTTCCGTTATAAATACATCATTAGTCCTATTCAAAATAAGTTTTGGCTCTATGCAATAGCCTACTATTTACTATCTAA CACTAAAGGAATCATTTTCATCTCCTGCTTTCTCATCATCCAAGAAAGTATAGTCTCTAAGTCTAGTTTATCAAGAGACA ACTCTCTGATTCAACAAATCCACTGTGATTATCATGTGAATCTTGTTTCTCCACTAATGTCCCACAACCTTGCTTCTCCT TTGGTACATCCTTCATCTTTCCTACACAAGTTAAAGGTTGATATACACATTCATTAAGGCCCCATTTGGAAGAGTTTATT TGGGCTTATCTTATAGCATTAGCGTTTATGAAAGTGTTTGAGAGAGCTGGTCTGGTTTCATTGGCTTTATCTTGCTCTAA TTTTATTTTATAATATGTTTTGACAACAGTGATGTTTATATCTGTCAGGTTTTTGCATTTATTGCTCCTAAAATTATTGG TGGAAAGAATGCACCATCTCCCGTGGGTGAACTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTCGCT ATGAACAGGTTAGTGGCACTTCATTTGCCTTTCCTTTAGATGTTTTTTTTTTCCTTACAAAAATATTAGGTATGATCTTA TGTATTCGTGGCTGAATTTTATCACAAGCATCTAAAGAAAATGTTGTTATGTCACTTGCACTGTATATTTTAGTTGACCC AATACTTGTTCATGATATATTGTGCAAAGAAATTGATACTTCAAAGTTCAAATAGCAGCCACACCTTGTCGGATGCTTCT CAAACACTTTGAATATTCGGAGAAGCATTTTACATATCTTTTCACTTATATATTTCGAACTTCTTACCAACATATTGAAG ATATCGACTAGTTTAACGTTGGCTGCTGAGGCCTAATACAACCCTCCTCCTTCACCCGGGCTTGGGACCAACTATGCAAG CATAAATGGTATGGGCATGTACAAAGAAGACCTATGGAGGCACCGGTGAGGAGGGTTCATAACATGTATGGTATTTAGTC CTCCTAAGGTAGAGGGAGGCCAAAAAGAGGTTTGGAAGATATTGTTAAAAATAATTTCAATATCAATAATATCCCTTATA ATTTGGTTTCTGGTTGACGTCAATGACGTAGTGTGATCCATATAGCTGACTTCACTTAATGGGATAAGACTTTTGTAGTT GTTTACCAACATATAGATGGGAATACTGCAATGATGAAAGAAATAATAGCATTTTATTCTATCTATATACTCATGCTAAA TTTTAAAGCATCTGTTCCCTCTTTTTAATTGAACTTGTGTTTCTACATTAATTATATGTGTTGTATTTTAACCATGTTGT CATTGTCTCCAATATTTTTGAAAATTTATCACATCGCAATGTCTGCATTGTGTCATATTTGTCTCTCCCTTTGTATCCAT ACTGCTAAGGCCTTTGCTTTTCTTTGATGGCGTTGTGTTCTGGCAATGGAAACGCAGGTTGGTCCTGACATGCTTGTTAG TGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACTGGAGGAAACTTTTGTTGTTGATCCTACTATCT CGCGATACGAGTCTAGCATCATATTTTTCTATAAAACATGGGATCCTTACGGTGCATTTTCAAATTTCTCTCCTCATGCC ATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGTCAAGTGTGGAGCATTTTTACCAGGTACTTGCGTTTTTGCA TAAATTCTATTTTTCGTCTGAAGTTTTGTTGCATTGCTTATAGATATTGTTTGATGGATAGGCACACAAGTTTGTTGGGG CGGATGATGCTTGTGCAGATTGTGTTGAAAGGATTAAATCTGCAAAAAGTCCAGAAGAGGCTGCAAAAATAGGAAGGTCA ATGCAAAGGAAACGTCCAGATCTGGTATTATGTCTAGTGGTTTTCAAACTTGTCTCAAACTCTTACGAGCTGTTTGATTA TTGTTTTGTAAAACAGCTTTCACTTTTGAAAAACAGAAAGAAAAAAAACTCCTTTAATATGAACAGTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0486000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACCCGGCGACTGCCACGCTGACAGTGCTGCTGTGTCTGCTCTGCTTCAGGGAGGGGTGAAGAGAGTTGTCATTGG AATGAGGCATCCATTGCAGCATCATCGGGGCAATGCCGTGCGTGCACTCAGAGGTGAAGGACTGCAAGTTGATCTTCTTG GAGAGGATCTCACTAGTAAGCTTGTTGAGGATGCCCAGAAAGAATGTCTTCTTGTCAATGCCCCTTTGATTTGTAGAGCT ACTTCGCGCATTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTAGCTCTGGCCATGCATC ATGGATAAGCAGCAAAGAATCTAGAAATCTAGTTTTTGATCTGCGAGGTAGAAGTGATGCGGTTATTGTGGGAGGAAATA CAGTTCGAAAGGACAATCCAAGACTGACTGTCAGACACGGAGGTGGGCGTATGCCTGTTCGCATTGTAATGTCCCAGACT CTCAATCTTCCAGATGAAGCGCATCTATGGGACACTTCTGAGGTTTCTACCATGGTTGTAACACAGAGGGGTGCAAGGAG GAGTTTCCAGAAGCTGCTTGCATCTAAAGGAGTTGAAGTAGTGGAGTTTGACATGTTAAATTCCCAAGATGTTATGGAGT ACTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAATGTGGAGGAACATTGGCTGCCTCTGCTATTTCATCCGGAGTA ATTCACAAGGTTTTTGCATTTATTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCCGTGGGTGAACTTGGGAT GGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTCGCTATGAACAGGTTGGTCCTGACATGCTTGTTAGTGGATTTC TTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACTGGAGGAAACTTTTGTTGTTGATCCTACTATCTCGCGATAC GAGTCTAGCATCATATTTTTCTATAAAACATGGGATCCTTACGGTGCATTTTCAAATTTCTCTCCTCATGCCATTCAAAT GCCTGATGAAAATGGTGATTATGTGACTTGGTCAAGTGTGGAGCATTTTTACCAGGCACACAAGTTTGTTGGGGCGGATG ATGCTTGTGCAGATTGTGTTGAAAGGATTAAATCTGCAAAAAGTCCAGAAGAGGCTGCAAAAATAGGAAGGTCAATGCAA AGGAAACGTCCAGATCTGTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0486000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPGDCHADSAAVSALLQGGVKRVVIGMRHPLQHHRGNAVRALRGEGLQVDLLGEDLTSKLVEDAQKECLLVNAPLICRA TSRIPFSVLKYAMTLDGKIAASSGHASWISSKESRNLVFDLRGRSDAVIVGGNTVRKDNPRLTVRHGGGRMPVRIVMSQT LNLPDEAHLWDTSEVSTMVVTQRGARRSFQKLLASKGVEVVEFDMLNSQDVMEYFHDRGYLSILWECGGTLAASAISSGV IHKVFAFIAPKIIGGKNAPSPVGELGMVEMSQALNLIDVRYEQVGPDMLVSGFLQPLPDMVPVIPSLEETFVVDPTISRY ESSIIFFYKTWDPYGAFSNFSPHAIQMPDENGDYVTWSSVEHFYQAHKFVGADDACADCVERIKSAKSPEEAAKIGRSMQ RKRPDLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11079
1 319 319 6.5E-80 –
PANTHER
PTHR11079:SF168
1 319 319 6.5E-80 –
TIGRFAM
TIGR00326
14 289 276 4.3E-56
IPR004794
Gene3D
G3DSA:3.40.430.10
77 293 217 5.5E-62
IPR024072
SUPERFAMILY
SSF53597
84 291 208 2.55E-52
IPR024072
TIGRFAM
TIGR00227
84 291 208 5.6E-57
IPR011549
Pfam
PF01872
87 289 203 2.6E-43
IPR002734
SUPERFAMILY
SSF143990
312 402 91 1.07E-18
IPR037238
Gene3D
G3DSA:1.10.357.40
314 406 93 1.4E-20
IPR037238
CDD
cd15457
323 405 83 6.08175E-26
IPR012816
Pfam
PF08719
326 401 76 3.6E-10
IPR012816
MobiDBLite
mobidb-lite
388 407 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008703
Molecular function 5-amino-6-(5-phosphoribosylamino)uracil reductase activity Catalysis of the reaction: 5-amino-6-(5-phosphoribitylamino)uracil + NADP(+) = 5-amino-6-(5-phosphoribosylamino)uracil + H(+) + NADPH.
Subterm of
GO:0008835
Molecular function Diaminohydroxyphosphoribosylaminopyrimidine deaminase activity Catalysis of the reaction: 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(2)O + H(+) = 5-amino-6-(5-phosphoribosylamino)uracil + NH(4)(+).
Subterm of
GO:0009231
Biological process Riboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
Subterm of
GO:0050661
Molecular function NADP binding Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0486000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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