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IPR037238 is a YbiA-like superfamily.
<p>This superfamily contains E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. This family was predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and was been named NADAR (NAD and ADP-ribose) [[cite:PUB00079392], [cite:PUB00079393]]. More recently, YbiA has been shown to be involved in the disposal of riboflavin intermediates. It catalyzes the hydrolysis of the N-glycosidic bond in the first two intermediates of riboflavin biosynthesis, which are highly reactive metabolites, yielding relatively innocuous products [[cite:PUB00086631]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q9STY4|RIBRX_ARATH Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|A0A1J7G1G5|A0A1J7G1G5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000 | 30 | ||
| – | Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|K7WIZ6|RIBRX_MAIZE Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|I1N3Z5|I1N3Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000 | 18 | ||
| – | Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|K7WIZ6|RIBRX_MAIZE Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|A0A1J7G1G5|A0A1J7G1G5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000 | 18 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd15457 | CDD | 1 | 33.33 |