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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0534600 |
| Transcript ID | LotjaGi1g1v0534600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A072VJ30|A0A072VJ30_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi1g1v0534600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106280447..106286827) extracted from Lotus japonicus Gifu genome v1.2.
CACAGAGCAGCGTAGTGGTAGTCAAGCCGCATTGGCAAATTGAAGCTGAAAACGGCCTCAGAGAATCTCAATTGCTGCAA TGTCTTCCTTGTTCAGATTAAAGAGATTTCCCTTTCTTGCTAACCCCACTTTTCTTCTTTCATTTCACTCCCATTTTCAT TATGTACCCTCTTCCATTCACAATGTTGATGATGCTGTCTCACACTTCAACCGCTTGCTCCAAATGCATCCTACCCCTTT CATCATCGAATTTAGTATGATTTTATCTTCCCTACTGAAGATGAAGCATTACTCCACCGCTATATCCCTTTCTCACCAAA TGGAACTTAAGGGAATTGCGCCAAACTTTATTACTCTCAGCATATTGATCAACTGTTACTGCCATCTAGGTCAAATCACT TTCGCATTTTCTGTATTGGCCAACATTCTCAAGAGGGGTTATCACCCAAATACAATCACCTTAAATACACTTATCAAAGG TCTCTGTCTTAAAGGCAAGGTTCGAAGAGCGCTTCGATTTCATGACGATTTGGTGGCACAGGGATTTCGGTTGGATCAAT TTAGTTACGCGATCTTGATCAATGGGTTATGCAAAATGGGAGAAACAAGTGCTGCATTGGAATTGCTTAGAAGGCAATTG GTTAAGCCTGATGTGGTAATGTACACTACAATCATTGATAGCTTGTGTAAAGATAAACTTGTAAGTGATGCATATGACTT ATATTCTGAAATGGTTGCCAAGAGAATTCCACCTAATGCTGTGACTTATACTTCATTGATATATGGCTTTTGCATTGTTG GTCAATTGCAACAAGCGGTTGGTTTGTTAAACGAAATGATTTTGAAACGCATGGACGTGGAAGTTCATACTTTTAATATA TTGGTTGATGCTTTATGTAAGGAAGGAAATGTGAAAGAAGCAAAAAATGTGTTTGCTGTGATGATGAAAGAAGGCGTGAA ACCTAATATTGTTAGTTATAGTTCTTTGATGGATGGGTATTGTCTAGTTAAGGAAGTAAACAAGGCCAAAGATATATTCA ACTTAATGGTCCAAAGGGGAGTGAGTCCTGATGTTCAGAGCTACACTATCGTAATTAATGGTTTGTGTAAGATTAAAATG GTGGATGAAGCCTGGAAACTTTTAGATGAAATGCATTCCGAAAAGATAATTGCTGATACAATATGCTACAATTCTCTTAT TGATGGTTTGTGCAAATTAGGGAGAATCTCTGATGCTTGGAAGCTTGTTAATGAGATGCATCATAGAGGTACACCACCTG ATGTTATCACTTACAACCCTTTACTTGATGTTTTATGCAAAAGCCATAATGTTGACAAGGCAATTGCATTAATCAAGGAA ATTCAAGATCAGGGTATTAAGCCAGATGTCTTTACATACACTATACTAATTGATGGACTATGCAAAGTAGGAAGACTTAA GGATGCTCAGGAGATTTTTCAGGATATTTTAATAAAAGGCTACAATGTAACTGTCCAGGCATACACAGTTATGATCAATG GGTATTGCAAAGAGGGCTTGTGTGATGAAGCATTGGCATTGATTTCAAAAATGGAAAGCAGCGGTCGTATGCCTGATGCT GTAACTTATGAAATAATTATTCGAGCTCTTTTTGAAAAAGGTGAGAATGATAAGGGAGAGAAGCTTCTTCGTGAAATGGT TGCTAGAGGTTTACTTTACAACTAGGTAAGTTTCTTTCTAGTTCCATATTAAATTATTTGAAACTTGATTTTCTCCATTC AATCTGTAATTTTTTCAATGATTGTTACACATAAGAAAGAAGATGCCCTACGACTCTCATTTTAGTTTTAATTAAATTTA TGTGTTGTTATGTTCCTCTTGCTATTGCAATGATAACAATGGTCAGTTATTTTAGCCTTGACATGAGTCACATAACTATC CTTTTTCTTCTCAATCTACTGTTGATCTGCTCCCTATATGTATTTTTTTTTTCAGTTGGTGGTCATTGTCAGTTTCTCAG ATAACAAACCAAGCTGAAACTGATTTGATTGTTTGGAATTCTTTACCTCTTACACTTTACTCTATTAATTATCCAAATTA ATGATAGTTGAAGTGTATTTTTGTGTTGATGTTTATTTCTTGTTTGTTTGTGCTGATTTAGCTTGTTATCCTTGTGCATG AGCTGTTTTTGGCTTCTGGATCTTCTTATCACTGGTAGAAGTGATTACTTTGGGGAAGCGGTAGGGAGGGAGGTTATTTG CAATGAACATGTTTAGTTTGTCTTATTTTGGGGTTCTGTTGTGGTCGGTGCAAGTTTTATTGTCACTGTTTTGCAGATCA GCTGGAAAATAGGGAGAATGGTGGTCCTAGGTCATGACTTGTTCAGATTTGTCATATGAGCCTTACCTAACAACTTAAGG TTTTGGGATAATTGGTTGTTTGACATGGTATCAGAGTCTCTGACTAAATGGTCTAGAGTTCGATCCTTTGCCGCCCCCAT TATTTAAGTGAAATTTGAGCTCATGGTAGGTGGACTTGTGCATTGTTCACGCTTCAAGCCCAAGTAGGCTCTTGTGTGAG GGCGCATTTTAGAAATATAGTATAGAACCATTCATATGGCCCTTTCCCTACAACTTAAGTTTTTGGGATAATTGGTTGTT TGACAAGATTCATGGTATCATGTGCCTTACGAAAATTTCCTTCATCAAATATCAGTGTCATTAAGCTTCTTCAAGTACTA TGACTTTGAAATGGATGGTTATGGCCTGCAAACTAATTGCTAAAGATAGGTTGGTTTCTTTGGATGATCTGAGGAGTGTA AAGGCTGAGATTGAGATAATGAGTAGGCTTTCTTGGCACCCAATTGTTGTAGATCTCATGGAACGTTGAAAGAGGAAGGT TTTGTTCTTTAGTATCTTTGTGAGGCAGGAGTGCCATTTCATAGATTAGAGAAGCATGGGCAGTTTTCTGAAATTTGAGC CAGGGTTCACTTTAGGAACCTAATTTTTTGTCATGCAGATGAGGGGTTTTCATAAAGATTTGATTCTATTTGCTTCATAT TATTGATAGTTGAACTTGACTTTTCTTTTGTAGTTTTGTCCTTAGGGGTTTGTGCTGTTTTCACTTGTTATTTTTGTATA TGTCCTGTTTTTGGCTTCTGGGTCGTGCTGTTTTTGTAATTTTTAAGTTTATTAAGGATCATTGGTGCCTGTTCACTAGT GTGGTGCAGATTGGAGTTTGTGACATAAAAATTTATCTTTTTTTTTTTGTTTTCCATTTGAGTTTCTAGTGCAAACATCT TTGCAGAAGCAAGCTTGTCAAAGTTTCTTTTTCTGCCAGATTTTCCCCTTTGCGTTGGACATGATGTTAAACTACTATGT GAGAGTACATGAATGGTTTTAAATCTAATATGCCCCATCGCACCTGTGGTCTCCTTTCAAAGGGAAGAGTGAAAAACACA TGCACATTTTTGTTTGAATCATCTGATTTGTCTTATGTGTTGAAGTTGCTAATATTTCCTTTTTCTATGACTACGGTTTA TTTTGGTAGTGAACATTTTAAGAGACTGTTTTCTTGTGATCGTTTAAAATTGACATTCATAAAATAATGAATAAAAGAAA TATAAGAAATGTGGATTATCCAAAAGGCTCAGATTTCATTTCTCTTGTTTAGTTATGATTATGATCATTTATAGTCCCTC ATTGGAATTGCACTATAAAGATAATCAGTATTATAACTTTTGAATTATTTACTTGTGCTCTTTTTGAAAGAAAAAAAAAA GCGATAAGGCAAAGCAACTTTTCATCAAATGGTTGCTCGAAGCTTGCTGAAAGGAAAAAAGAAGATAAACAACTTTAGTG CCATATAAAATACCTGTTTCTGTCACTGTTGAACTTTTATGGTTGGTTTGCATATTTTGTATCTGCTGGGTCAGAGTAAT TAAGCTTTATAATGGCCTCACTGCTTCTTATGTTTTGGATGTCTTATGTTTTTTAATTAATTTTGTACTTGATATGGTTG CCATCCTTCACCCCAGGGTAGTTTCAATATTATCTGTTGACTCTTATAATGTTCTTTCCATTTTTTGTTTATAGGGTTAG TGTCTTGATAGTTGCTTTAGTTTGGAGTTCTTGGTTTGTTTCATATGAGATGGTATATTGTCTCTTTTTTAATGAAACAA GCCCAACAAAAATTAAATAGATTGTTACAATTGATTTTATTTCCAGCATTGCTGATCCATTCTGTGATTTTATAACCAAT AATAATCCCCATAATCTGGTTTTTGATTGAGCTCAATGGCGTAGGGTGACCCATAAAGCGACCTTACATGGTGGGATAAG ACTTTTGTTGTTGTATTGCTGATCCATTCTGAAGTTAAATGGTTTTTATTTCTACTTACAAACAGATCCAGTCACTAAAA TGCCTTCTTTATTACATACTAAAGATTTTTCTGTAACACCTGATATTTCTCTTAACAAAACTTAGTGTTTAAATCAATTT CTTTAGATCAGCTAAAACTTTCGATTGTCTCAACCAGTTGATGTTTTCATTGCTGCATGCTCCTGAGTTGTAAATTTTGG AAATTTCACTTGATGAAATATTTTTAAAATTATAAAATCAAAAGACTATTCTTCTGACAGTTTTCTGTTTAAACTTAGAT GAATTTTCTAAATACAACATGACATAGAGTCTACTACTACTATCCCTATAAAAACATGATGAAAAAACCATTATTATCAA ACCTAGTTTAGAGTTTTGGTGTCAACAACAGGGAACCACTGTCTTTTAAATTATGGTATTCTCTAGTTCTAATTGCAGAT TACACGATCTTTCATCAGTATTTTTAATTTCTTCTCTGCATTTTTATGGCTCTTGTTGTGTTTAGAAAGGATGAAAGGTA AAACACTTCTTTTCGCCTTTGCAGTTACATTTGAATATGAAAGGAATGGTGGTGACAAGGAGAGTATATAATCAATTGGT TAGTTTAAGCTGGTTGTTACTTGTTACCACCTGGAAGAGAAGGCACTGATCTGGAATTTTTCTCAGTTTTTTGCATTTGA AATATTTTTTGTTGCAATTGTCCACTGTAACTAGAGCTTTGTTCTTTAAAATGCCCCATCATTATTATAATAATTTTAGT TCTTAGTTCCTACCATTCTCCTTCCTCTTGAATATGCTATAACTACGTGGTAAAGTGTAAAATGTTTCAATGACTTCTTT GGTTCAGATTAAGCGTTTAGGTACAGGACTATTGTCAAAATTGTATACTATGTTGGAGTTACTTTATTTTGCATAGAAGC TCAGGAGGTTCTTATCTTTTATTCGGTTGAATTTACAAATTGATATCGCAATATTATTATATTAGAAAGAGCGAATTTAT CTTTAAATTGCTATAGCAATTTTCAAATTGTTGCTATAGTCATTTTTTGAATTCAAGATGTGTTTCTATGAAATATATTT ATTTTCAGATATAAGCTAGTTGTGCACATCATTGCATCTTCATTTTTTCTCACTTTCATCATTGATTTTCCCCAACAATA TAGTGATTGATGGAATGTGTCGAGCTGGGAAACTGAATGATGCATGAGAGCTCGTCTTCTAGCTAAATGGTTACAAATTA ATGTTTATAATTATACTTATATACCATGGTCAATTTAAAAGGACTATTAGATGATACTGAAAACCTAGACTTGTGAATGT GGATGAGAATTGCCGCTGTCTTCTAAATGCACTTATCATGTCTGTGTTCAAGGATTTCTGATATATGCTTGGCATGACTT GGTTAAAGATTTGAATAAGGAAGTGCTGTGTACAAAACCTTCTCTAAAGCTCACTGCCCCGGAGGTTTTAGGTAAGTTTA CTTCTTTTTCTTTTTTCCCCACCCCCACTGTCAATGACCCATTTGCTTGAGAGAGAACTGATCATTTAACTGTTGAATGA GCTTGAGCTTCTGAATGAAGGAAATCGCTTCTGGTGATGATTTCATCCGCATTGATCAACATATAAATAAATAATCCAGA GTTAGAAAGCACCAAAAGTGAAGGATCACATTTGCAAGTAGTGAACTCCAAGTGAATTAGAGCTGTTGTCAACCTTTCAA AACAGGTCCGAGGAGCCTGTTTTGTTTTAGGCCATAAAGAGCCTTATGCAACTTACAAACCATGCTCTTGTCAGTTTCAC CATTGCATGTATACTTCTTCCTCAAGAATGCCATTTGAAAAGGCATTGTTGACATCCAGCTGCTGTATAGGCCATTGTTG TGTTAAAGCAAGGGTGAGAACAACCTGAACAATAATAGGTTTGGTAACTGTACTAAAAGTTTCAGTATAGTCAAACTCGT GTTGTTGATGAAACCCTTTTGCAACAAGATGAGACTTGTATTTATTGACTGATCCATCGGG
CDS sequence (LotjaGi1g1v0534600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCTTGTTCAGATTAAAGAGATTTCCCTTTCTTGCTAACCCCACTTTTCTTCTTTCATTTCACTCCCATTTTCA TTATGTACCCTCTTCCATTCACAATGTTGATGATGCTGTCTCACACTTCAACCGCTTGCTCCAAATGCATCCTACCCCTT TCATCATCGAATTTAGTATGATTTTATCTTCCCTACTGAAGATGAAGCATTACTCCACCGCTATATCCCTTTCTCACCAA ATGGAACTTAAGGGAATTGCGCCAAACTTTATTACTCTCAGCATATTGATCAACTGTTACTGCCATCTAGGTCAAATCAC TTTCGCATTTTCTGTATTGGCCAACATTCTCAAGAGGGGTTATCACCCAAATACAATCACCTTAAATACACTTATCAAAG GTCTCTGTCTTAAAGGCAAGGTTCGAAGAGCGCTTCGATTTCATGACGATTTGGTGGCACAGGGATTTCGGTTGGATCAA TTTAGTTACGCGATCTTGATCAATGGGTTATGCAAAATGGGAGAAACAAGTGCTGCATTGGAATTGCTTAGAAGGCAATT GGTTAAGCCTGATGTGGTAATGTACACTACAATCATTGATAGCTTGTGTAAAGATAAACTTGTAAGTGATGCATATGACT TATATTCTGAAATGGTTGCCAAGAGAATTCCACCTAATGCTGTGACTTATACTTCATTGATATATGGCTTTTGCATTGTT GGTCAATTGCAACAAGCGGTTGGTTTGTTAAACGAAATGATTTTGAAACGCATGGACGTGGAAGTTCATACTTTTAATAT ATTGGTTGATGCTTTATGTAAGGAAGGAAATGTGAAAGAAGCAAAAAATGTGTTTGCTGTGATGATGAAAGAAGGCGTGA AACCTAATATTGTTAGTTATAGTTCTTTGATGGATGGGTATTGTCTAGTTAAGGAAGTAAACAAGGCCAAAGATATATTC AACTTAATGGTCCAAAGGGGAGTGAGTCCTGATGTTCAGAGCTACACTATCGTAATTAATGGTTTGTGTAAGATTAAAAT GGTGGATGAAGCCTGGAAACTTTTAGATGAAATGCATTCCGAAAAGATAATTGCTGATACAATATGCTACAATTCTCTTA TTGATGGTTTGTGCAAATTAGGGAGAATCTCTGATGCTTGGAAGCTTGTTAATGAGATGCATCATAGAGGTACACCACCT GATGTTATCACTTACAACCCTTTACTTGATGTTTTATGCAAAAGCCATAATGTTGACAAGGCAATTGCATTAATCAAGGA AATTCAAGATCAGGGTATTAAGCCAGATGTCTTTACATACACTATACTAATTGATGGACTATGCAAAGTAGGAAGACTTA AGGATGCTCAGGAGATTTTTCAGGATATTTTAATAAAAGGCTACAATGTAACTGTCCAGGCATACACAGTTATGATCAAT GGGTATTGCAAAGAGGGCTTGTGTGATGAAGCATTGGCATTGATTTCAAAAATGGAAAGCAGCGGTCGTATGCCTGATGC TGTAACTTATGAAATAATTATTCGAGCTCTTTTTGAAAAAGGTGAGAATGATAAGGGAGAGAAGCTTCTTCGTGAAATGG TTGCTAGAGGTTTACTTTACAACTAG
Protein sequence (LotjaGi1g1v0534600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSLFRLKRFPFLANPTFLLSFHSHFHYVPSSIHNVDDAVSHFNRLLQMHPTPFIIEFSMILSSLLKMKHYSTAISLSHQ MELKGIAPNFITLSILINCYCHLGQITFAFSVLANILKRGYHPNTITLNTLIKGLCLKGKVRRALRFHDDLVAQGFRLDQ FSYAILINGLCKMGETSAALELLRRQLVKPDVVMYTTIIDSLCKDKLVSDAYDLYSEMVAKRIPPNAVTYTSLIYGFCIV GQLQQAVGLLNEMILKRMDVEVHTFNILVDALCKEGNVKEAKNVFAVMMKEGVKPNIVSYSSLMDGYCLVKEVNKAKDIF NLMVQRGVSPDVQSYTIVINGLCKIKMVDEAWKLLDEMHSEKIIADTICYNSLIDGLCKLGRISDAWKLVNEMHHRGTPP DVITYNPLLDVLCKSHNVDKAIALIKEIQDQGIKPDVFTYTILIDGLCKVGRLKDAQEIFQDILIKGYNVTVQAYTVMIN GYCKEGLCDEALALISKMESSGRMPDAVTYEIIIRALFEKGENDKGEKLLREMVARGLLYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 29 | 18 | - | – | |
| Phobius | 30 | 48 | 19 | - | – | |
| Gene3D | 31 | 185 | 155 | 3.4E-32 | ||
| PANTHER | 33 | 184 | 152 | 8.3E-193 | – | |
| PANTHER | 33 | 184 | 152 | 8.3E-193 | – | |
| SUPERFAMILY | 35 | 465 | 431 | 3.57E-10 | ||
| Phobius | 49 | 66 | 18 | - | – | |
| ProSiteProfiles | 54 | 88 | 35 | 7.278 | ||
| Pfam | 58 | 102 | 45 | 1.8E-7 | ||
| Phobius | 67 | 86 | 20 | - | – | |
| Phobius | 87 | 114 | 28 | - | – | |
| ProSiteProfiles | 89 | 123 | 35 | 9.778 | ||
| TIGRFAM | 92 | 125 | 34 | 3.3E-5 | ||
| Phobius | 115 | 541 | 427 | - | – | |
| Pfam | 123 | 172 | 50 | 2.7E-12 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.567 | ||
| TIGRFAM | 126 | 159 | 34 | 3.7E-5 | ||
| ProSiteProfiles | 159 | 189 | 31 | 8.649 | ||
| TIGRFAM | 161 | 185 | 25 | 2.0E-4 | ||
| Gene3D | 186 | 255 | 70 | 2.0E-20 | ||
| PANTHER | 187 | 360 | 174 | 8.3E-193 | – | |
| PANTHER | 187 | 360 | 174 | 8.3E-193 | – | |
| Pfam | 190 | 238 | 49 | 2.9E-17 | ||
| ProSiteProfiles | 191 | 225 | 35 | 11.718 | ||
| TIGRFAM | 193 | 227 | 35 | 1.9E-8 | ||
| ProSiteProfiles | 226 | 260 | 35 | 9.756 | ||
| TIGRFAM | 228 | 255 | 28 | 1.1E-4 | ||
| PANTHER | 245 | 414 | 170 | 8.3E-193 | – | |
| PANTHER | 245 | 414 | 170 | 8.3E-193 | – | |
| Gene3D | 256 | 323 | 68 | 3.1E-20 | ||
| Pfam | 261 | 288 | 28 | 2.6E-8 | ||
| ProSiteProfiles | 261 | 295 | 35 | 12.978 | ||
| TIGRFAM | 263 | 297 | 35 | 4.7E-10 | ||
| Pfam | 295 | 344 | 50 | 8.2E-17 | ||
| ProSiteProfiles | 296 | 330 | 35 | 12.057 | ||
| TIGRFAM | 298 | 332 | 35 | 1.1E-9 | ||
| Gene3D | 324 | 395 | 72 | 4.4E-24 | ||
| ProSiteProfiles | 331 | 365 | 35 | 11.509 | ||
| TIGRFAM | 334 | 366 | 33 | 1.2E-9 | ||
| PANTHER | 347 | 484 | 138 | 8.3E-193 | – | |
| PANTHER | 347 | 484 | 138 | 8.3E-193 | – | |
| ProSiteProfiles | 366 | 400 | 35 | 13.471 | ||
| Pfam | 366 | 393 | 28 | 1.6E-10 | ||
| TIGRFAM | 368 | 402 | 35 | 4.4E-11 | ||
| PANTHER | 396 | 538 | 143 | 8.3E-193 | – | |
| PANTHER | 396 | 538 | 143 | 8.3E-193 | – | |
| Gene3D | 396 | 464 | 69 | 4.2E-24 | ||
| Pfam | 400 | 449 | 50 | 1.3E-17 | ||
| ProSiteProfiles | 401 | 435 | 35 | 12.277 | ||
| TIGRFAM | 403 | 437 | 35 | 1.5E-8 | ||
| ProSiteProfiles | 436 | 470 | 35 | 11.762 | ||
| TIGRFAM | 438 | 468 | 31 | 1.9E-5 | ||
| Gene3D | 465 | 536 | 72 | 3.9E-17 | ||
| ProSiteProfiles | 471 | 505 | 35 | 12.068 | ||
| Pfam | 472 | 517 | 46 | 1.6E-12 | ||
| TIGRFAM | 474 | 506 | 33 | 2.2E-7 | ||
| ProSiteProfiles | 506 | 540 | 35 | 10.128 | ||
| TIGRFAM | 508 | 539 | 32 | 4.5E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0534600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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