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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0576100 |
| Transcript ID | LotjaGi1g1v0576100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|A0A151SUQ7|A0A151SUQ7_CAJCA Rhomboid-like protein; Found in the gene: LotjaGi1g1v0576100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111321686..111324315) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGCTATGGAAGTTGATAAAGTGGTTCATAGACACCAGGTTTGGCGTCTCTTCTCTTGCATGTGGTTGCACGGTGG GGTCGTCCATGTGCTTGCCAACATGTTGAGTCTTGTTTTTATCGGAATTCGGCTTGAGCAAGAATTTGGATTTGGTATGG TCCTGGTAATTATCCTTGCATTGTTCAAGTTTATCACGAGAAATTGTCATGACCATTGAGGGAAACTCTAAACTGATTTG AGCAGCTAAATGAATAAAAAACATTTTTTCACTTATCAGTTTCAGATTGTAATATCATCTACTTTGGTTGTTTCTTTGCA GTTCGAATTGGATTTGTGTATGTGATATCTGGTTTTGGAGGGAGTTTGTTGTCTGCTCTATTCATACAATCAGGCATCTC GGTTGGTGCTTCCGGTGCGTTATTTGGCTTACTAGGAGGGATGCTGTCAGAGCTATTAATAAATTGGACAATATATGCCA ATAAGGTGAACTAAACAATAATTTTGTTAAAATTCGATGGTGCTTCCTAGAAAATAATCCACTCTGCATTTGTGCCACAT GCAGCTATTTTATTTATTTGCGTTTTATTTTTTGTGTTGTTTTGCAGTTCGCAGCGTTGTTGACTCTTACGGTCATTATT GTAATCAATTTAGCTGTTGGGATCCTTCCACATGTGGACAATTTTGCACACATTGGAGGATTTGTCTCCGGCTTTCTTCT TGGGTTTGTCTTTCTGATTCGTCCACAGTTTAAATGGATTAGCCAAAGAAATCATAGTGCTGGGTATGCTGCACCTTCTG TGAAACATAAGCACAAACCTTATCAGTATGCACTGTGGATCATCTCTTTCACATTACTGACTGCTGGGTAAGTCCTCATT CAATTTTTTCTTTCTTTTTTAAAATTTACCTTTTACTTTGTTAGCGTATCTAATTGCCTTGATATCTATGAGAAGGTCTT TACACAAGATTAGGACTTCAATACTTGTTTGGCAAAAACTTCGCTTGTTTAAGATTGAAGTTATTTTCGGGAAAGGGTTG TTATTCTAGCTTCTATTTGAGTGTCTGCTCTGGGTTTTGCATGGGGGTTCTTTGTCAGACATGTATATTGTGGATGGCTC TCTTTCTGATTTTGTTTTTCCTGGTTTTCTCTTCTCTATCATTTTAGTATGGTTCCTGATCCTCCTTGCTCTGTCCTTCC CTTCTGTCTTAATTATATCTAGCTATGGGTGGGGATCCACATCCACTTGCATTAAGAGTAACCCTGACTGGATTTACTCC GCCTAATAATTGTGTATAGAACATGAATTCAGCAAACCCAACCGTAAGTGGATCCCCATGTGCATGCTTGCATGCTATGC GTATCAAGTGAGAGAAGTTGAACATGAGAATAATTGCTTTTGACTATATAATTATAGTGAACGATCAACATTATAGTTAA GTAAAACAATTGAAACTAGAAAATGTTGAGTATCCATATGATAGGAGCTATATTTACTGTTGAATTAAGAGGAACATTCC AGATAACAGAGCTCTAGTTACAGAGGAAAAATGCAGCAAATATAGAAATTAGAAAGGAATAAATGGCCTCTGAAAAGGAA TAACTTGTCTGCACTGGCAGAAGCCACCCACAACTATGCCAATAATTTCCTTCTCCAACACCTCAATCCATTCCCTCATA TTCATGTCTCCCTATGCTCCATTATATTGTATTCCTATCTCCTACGGCCACATCAGGTTTCTGAGGATTTACAATTACAG TTTTCTCTCCACTAGTAACAAACATCCCTCCACCATTTCCCACATTATTTTCTGTCCTACCTTCACTTTTATCCCTTCTG TAGTATACTCTCATTGGAGGCCCATGATGAGAGGCCATCACCATATATGGTTGTAAGTTCAGGATTAATTGTTTTCACTA GAACGGTTCTCTTAGATATGTCTCCTATAAAGAACTCTTTTTTGGAGAGGGGGGAATTAAACTTGCAGTCTCTCTTCAAT AGTTTCTTTGGGAGTCATTTTTACATATTGCTTCTGTTTCTCATCAACAGCGAGATTTACTAGTCCATACTACTACAATA TATTGATTAAATGTTATGGCGTCTGATATACTATTTATTTTGATGTGATGTTTATTTTATTATTATTTTATCTGTGTTGG TGCTTTGTGCTCAAATCTGAAAGTTGAATTGTTTTAACAGATTGATTACTGGGCTGGTTTTGCTCCTTCGAGGTGTTGAC ATGAATGATCGTTGCTCCTGGTGTCATTATTTAAGTTGTGTCCCTACCTCAAAATGGAGCTGCCAAAATCAAAATATTTA CTGTGAGGTGAGTGCTCATTTCTTGATTACTTTCCATCCATGCAGCTTCCAAGGAAAATGTATGATTTTACCGCCAAATC TATTGATGATTTAATGCCTGATAACTCCAAACATTAAAGGAGATTGTTGTACAATGTACTTCTTTTATCTGAATTGGTTT TGATACTAAATATTCTCTGCTGTGACGCTGCAGACAACACAAATAGGAAACCAACTCAACATAACATGCTTGAGCAATGG GAAAAGTGACATGTTTCCTCTGCCTAGCTCTTCTGAGGCTCAACAACTATGTTCTCAACTTTGCAGTTGA
CDS sequence (LotjaGi1g1v0576100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTATGGAAGTTGATAAAGTGGTTCATAGACACCAGGTTTGGCGTCTCTTCTCTTGCATGTGGTTGCACGGTGG GGTCGTCCATGTGCTTGCCAACATGTTGAGTCTTGTTTTTATCGGAATTCGGCTTGAGCAAGAATTTGGATTTGTTCGAA TTGGATTTGTGTATGTGATATCTGGTTTTGGAGGGAGTTTGTTGTCTGCTCTATTCATACAATCAGGCATCTCGGTTGGT GCTTCCGGTGCGTTATTTGGCTTACTAGGAGGGATGCTGTCAGAGCTATTAATAAATTGGACAATATATGCCAATAAGTT CGCAGCGTTGTTGACTCTTACGGTCATTATTGTAATCAATTTAGCTGTTGGGATCCTTCCACATGTGGACAATTTTGCAC ACATTGGAGGATTTGTCTCCGGCTTTCTTCTTGGGTTTGTCTTTCTGATTCGTCCACAGTTTAAATGGATTAGCCAAAGA AATCATAGTGCTGGGTATGCTGCACCTTCTGTGAAACATAAGCACAAACCTTATCAGTATGCACTGTGGATCATCTCTTT CACATTACTGACTGCTGGATTGATTACTGGGCTGGTTTTGCTCCTTCGAGGTGTTGACATGAATGATCGTTGCTCCTGGT GTCATTATTTAAGTTGTGTCCCTACCTCAAAATGGAGCTGCCAAAATCAAAATATTTACTGTGAGACAACACAAATAGGA AACCAACTCAACATAACATGCTTGAGCAATGGGAAAAGTGACATGTTTCCTCTGCCTAGCTCTTCTGAGGCTCAACAACT ATGTTCTCAACTTTGCAGTTGA
Protein sequence (LotjaGi1g1v0576100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAMEVDKVVHRHQVWRLFSCMWLHGGVVHVLANMLSLVFIGIRLEQEFGFVRIGFVYVISGFGGSLLSALFIQSGISVG ASGALFGLLGGMLSELLINWTIYANKFAALLTLTVIIVINLAVGILPHVDNFAHIGGFVSGFLLGFVFLIRPQFKWISQR NHSAGYAAPSVKHKHKPYQYALWIISFTLLTAGLITGLVLLLRGVDMNDRCSWCHYLSCVPTSKWSCQNQNIYCETTQIG NQLNITCLSNGKSDMFPLPSSSEAQQLCSQLCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 154 | 154 | 5.9E-33 | ||
| PANTHER | 1 | 262 | 262 | 1.2E-159 | ||
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 262 | 262 | 1.2E-159 | – | |
| Pfam | 10 | 151 | 142 | 7.1E-40 | ||
| SUPERFAMILY | 10 | 154 | 145 | 3.27E-38 | – | |
| TMHMM | 22 | 44 | 23 | - | – | |
| Phobius | 22 | 43 | 22 | - | – | |
| Phobius | 44 | 54 | 11 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 55 | 73 | 19 | - | – | |
| Phobius | 74 | 78 | 5 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 79 | 100 | 22 | - | – | |
| Phobius | 101 | 106 | 6 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 107 | 126 | 20 | - | – | |
| Phobius | 127 | 131 | 5 | - | – | |
| Phobius | 132 | 150 | 19 | - | – | |
| TMHMM | 133 | 150 | 18 | - | – | |
| Phobius | 151 | 179 | 29 | - | – | |
| Phobius | 180 | 202 | 23 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 203 | 273 | 71 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0576100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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