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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002610
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.824s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0066839.1
n.a. PREDICTED: inactive rhomboid protein 1-like [Glycine max] gi|356504274|ref|XP_003520922.1| chr0 23589145 23594753 -
2 domain predictions
3 GO terms
Lj0g3v0073479.1
n.a. PREDICTED: inactive rhomboid protein 1-like [Cicer arietinum] gi|502175388|ref|XP_004515720.1| chr0 27582211 27584877 -
2 domain predictions
3 GO terms
Lj0g3v0299849.1
n.a. PREDICTED: inactive rhomboid protein 1-like [Glycine max] gi|356557429|ref|XP_003547018.1| chr0 155775340 155778955 -
2 domain predictions
3 GO terms
Lj0g3v0325279.1
n.a. Chondroitin sulfate proteoglycan 5 [Chelonia mydas] gi|465962020|gb|EMP29585.1| chr0 169978322 169981266 -
2 domain predictions
3 GO terms
Lj0g3v0329999.1
n.a. rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|15240938|ref|NP_198667.1| chr0 172494802 172499919 -
2 domain predictions
3 GO terms
Lj0g3v0329999.2
n.a. PREDICTED: rhomboid protease GluP-like [Solanum lycopersicum] gi|460373127|ref|XP_004232374.1| chr0 172494802 172499919 -
2 domain predictions
3 GO terms
Lj0g3v0332049.1
n.a. Rhomboid family protein (ISS) [Medicago truncatula] gi|357436521|ref|XP_003588536.1| chr0 173722698 173725566 -
2 domain predictions
3 GO terms
Lj0g3v0332049.2
n.a. rhomboid family protein [Arabidopsis lyrata subsp]. lyrata] gi|297812787|ref|XP_002874277.1| chr0 173722698 173725266 -
2 domain predictions
3 GO terms
Lj1g3v0809690.1
n.a. PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera] gi|225456573|ref|XP_002265768.1| chr1 10618639 10625165 -
2 domain predictions
3 GO terms
Lj4g3v1721970.1
n.a. PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera] gi|225456573|ref|XP_002265768.1| chr4 24792085 24798657 -
2 domain predictions
3 GO terms
Lj5g3v2027100.1
n.a. PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max] gi|356575933|ref|XP_003556090.1| chr5 28531377 28534641 +
2 domain predictions
3 GO terms
Lj6g3v2270990.1
n.a. Rhomboid protease gluP [Medicago truncatula] gi|357452411|ref|XP_003596482.1| chr6 26275421 26280623 -
2 domain predictions
3 GO terms
LotjaGi1g1v0248700.1
n.a. Rhomboid-like protein; TAIR: AT1G77860.2 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|F4I8K2|RBL8_ARATH RHOMBOID-like protein 8; TrEMBL-Plants: tr|A0A1J7GBZ3|A0A1J7GBZ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248700 LjG1.1_chr1 59671559 59678619 +
2 domain predictions
3 GO terms
LotjaGi1g1v0576100.1
n.a. Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|K7M3E7|K7M3E7_SOYBN Rhomboid-like protein; Found in the gene: LotjaGi1g1v0576100 LjG1.1_chr1 111321243 111325351 -
2 domain predictions
3 GO terms
LotjaGi1g1v0576100.2
n.a. Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|A0A151SUQ7|A0A151SUQ7_CAJCA Rhomboid-like protein; Found in the gene: LotjaGi1g1v0576100 LjG1.1_chr1 111321686 111324315 -
2 domain predictions
3 GO terms
LotjaGi2g1v0147200.1
n.a. Rhomboid-like protein; TAIR: AT1G63120.1 RHOMBOID-like 2; Swiss-Prot: sp|Q9CAN1|RBL2_ARATH RHOMBOID-like protein 2; TrEMBL-Plants: tr|A0A151U6I6|A0A151U6I6_CAJCA Rhomboid-like protein; Found in the gene: LotjaGi2g1v0147200 LjG1.1_chr2 52821285 52825734 +
2 domain predictions
3 GO terms
LotjaGi3g1v0009700.1
n.a. Rhomboid-like protein; TAIR: AT1G52580.1 RHOMBOID-like protein 5; Swiss-Prot: sp|Q9SSR0|RBL5_ARATH RHOMBOID-like protein 5; TrEMBL-Plants: tr|A0A151SXT1|A0A151SXT1_CAJCA Putative polygalacturonase family; Found in the gene: LotjaGi3g1v0009700 LjG1.1_chr3 1078598 1082643 +
2 domain predictions
3 GO terms
LotjaGi3g1v0225800.1
n.a. Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|I1JLP8|I1JLP8_SOYBN Rhomboid-like protein; Found in the gene: LotjaGi3g1v0225800 LjG1.1_chr3 34769944 34775762 -
2 domain predictions
3 GO terms
LotjaGi5g1v0303600.1
n.a. Rhomboid-like protein; TAIR: AT1G63120.1 RHOMBOID-like 2; Swiss-Prot: sp|Q9CAN1|RBL2_ARATH RHOMBOID-like protein 2; TrEMBL-Plants: tr|V7BC17|V7BC17_PHAVU Rhomboid-like protein; Found in the gene: LotjaGi5g1v0303600 LjG1.1_chr5 62170123 62173828 +
2 domain predictions
3 GO terms