Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0059900 |
| Transcript ID | LotjaGi2g1v0059900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT5G15930.1 plant adhesion molecule 1; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12590261..12594940) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGGTATTTTGTTTTTTTCCTTT GTTATACTTATATGTGTTTCTCTGGGCTTTAATCATGAACGAGCATTAAAATTTGGCCTGTGGTCTTACCTTTACTATCA TATTTCTTTAATCAGAATTAGGGAGGAGAGAAGGGTTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGA AACATTATCTCAGAAAAAAACCCCATGTTGTTAAAAGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTT TGGCAGTTGATATCTGGAAGTCGGGACCTATTGCTCATGAATCCTGGAGTTTATGAGGTAATCAAGTCAATTTGTTCAGA TGAAAGAATGTGATGTAATATTCTAATAGCTTTGTTCAGTGCTTGCTGCAGTTTATCTTGTTTCAGTTTTCCAACCAATT GATATTGAATCTAAGCTACATTTTTATTCGCGCATATTTTTGTGTCATCACTGTGTATTTCTCTTTGCTGTAACAGTTCA CCAATGGTTGATATGCTGGGTTTTCTAAGTTGAACATTGTCTTTCATGGTAACACATAGCTTAAAGGATATCTTGAATGT GGATATGTACAATATTCAAAATTATCTGATCAATTATCACTCGGCTGCTTGAGTAAATCCTAGTGTGGATTTATCTTCAT AAAAGTATTATTTTGTATCGAAATTGTAGACATAATTTATTCTCATGGTATTCAGCTTCTGTGAAATATTATTTCCTTAA AGATTAAAATGAAATTGCCCCAACATCCATTGTTGACAAAACATAATGCCTGTTGCATATATTTAATTAATTAATGATTC TACATTCTTCTAATGAATCCCCCTAATTACTATGAAGAATAAAATATTAAAAGCTTTTTAGGTTTCAAGGCATTGAATTC TTTTTTGTTGTTGTTGTTGTTGTTGTTGCTAACTATTTTGAGTAATTAGGATTGGAGGATTTGTTAGGAGGGTATAGCTC TACTCATTTTTTTTTTTATGTTGGGAGCAGATCCTCTCCATCGAATTTACCTCTACCTAAGATAGTGACTGTTCAATATA TTCTCTTTCCATTCTGATTATCTATACAATTAATTATCTTCGATTAACCGATTGAACTACATTGGTGAAAAATAGAGAAG CATTTTTATTAATAGTTGAGTCTTAAATTTGTATTTCAGACTATTACATGTTTTAGCTAGTCTAGAGTCAATGTTAGATG TATTGGATACATTAATTAGGTCTAGAAATATCCAATTTCATAATTTGAAGTCTAATGATTCACAGAAGTTCAAAGTCATT CAAAAGTCTTCCATTAAACCCTTAAGGGTCCCATGAGTTCTAGATACATATTGGTCTGTAAACATAGATTCTTCATGTAT TCTTTTTAGAGTTGAAAGTTCAGCATTTAGATTTCAGTTAAGTATATACAGAATTGCACCCCGCATTAGTCATTGTTGTT TGAGTTTTTTTTTTCAACAAGTAACATAAGTCATTAAACACTCCCAATTTCAAGGAAATATAATTTCTACATTATCCTCG CACTCAATTAATATTTTCTCATTTGATGTTGTTGGGATGCCAAAAGACAAGGATAAAGTTGGAAAAAAGAAAGTTATTCT TTCTAGGTAGTCTAAAGTTACAACTTACAAATGTTTTGGAACAAACTAAAACCTATGTGACAATTATATTGAAATACAAA GAGTTATCTCACAGCAATACTTGTGTTGTGGGGATTTCCTGGTCAAAGACCCAAAACTGTTATTAGAATTAGGGATGCCT AACTCAACCCAAAAGCTAGCTCGAGAGTTGAGGGTTGCTCCAATGTGGGACTTCTAACACACCCCCTCACGCCCAGGGCT GGACATCTGGAGCGTGGAATGAACATCAACAGGTGGCCCAAATATGAGAGGTCTCCACAACAAATGGATCTAGGATAGGC TCTGATACCATATTAGAATTTGGGAGGCATATACTCAACCACAAAAGCTTGCTCAAGAGTTGAGGTTTGCACTACCCTTA TAAAGGCTATCTATGCTCTATATCTAGCCAATGTGGTACTTCTAACAACTATATATAGTATTGAGTTTCTTTTCACCGTT AGATAAGAAATTGACAGTTTGATTTCTAGCCAAGGAAATTGTTAGAAACCCCCTCAAACAGAATACGATATTTCGGAACG ATGACTGAGCAAACTGAGACAAAGAAGAAAAAGAACACATCTGTTATTGGAGGAAATTGAGAACTGAAGACTCAGCACAT CTCACTCACAATGTTCAGTTATATTTTTTCTCAATTTAGAAAAAACATTATAGTTGAGAATAACTTACCACATATGCCAG GTGTCATGCTTTATGATGAGGGAGTTTGTACTAGAGGAGTATTGAAAAAATTCCCTGCTATTGGTTGTGTAATCACAAAC AGAGAACAAAGGAGAGAATCTCCTTCCACTTCCAGTAGTTTCCCCTTTTTGTAAAAGATCTAGTTCTCAATTTCCTGATG ATAACAAAATCAGAATCCCTTTTCCGTTGACCCGTTTTACTATTTAAGCTAAACCTCTTCCTTTTCCAACTATAACTGCC CAGTTAATTTTATAACTACTTTGTAACTAACTATGACTTCATGATTGATAGGTATCCGCATCCCATAGGTTAGTTAGTTA GTTGAGGGGGTTCCTCTTAGTGGAGGGTTAGTTAGTGAGTGAGACTAGAAATACGATAGTTAGAGAGAGTATCATCATCT TTTGGATAATTTGGGATTGAGATTTAGGGAGAGGAGCTAAGACTCTTGGATTTCTCAGCAATGTTGTAGTTTTCTATACT GAATAATATCAGTTTCTGCCTTATTATTGGCTAGGTTCTATCACCAACTTACTTGAGTTCTGTCAGAAGTGAACTCCTCC CACAGGAAACATTTTATCCCACATACTACCCTACCTATTTCCATTTTTTTACAATTTCACTTATCATCCAAACCTAACAT ATAAGAAATTCCTTGGCCATATTATACAAGGGTGTTTAAAAGGGTTTTTTGCGTTTTGCATGTTTTAATTTTATATCATA GGAAGATATTATTATTTTGCAAATGACTATTTTTTTGCAAGTTTAGTTACGTTTGTGATGATTACTGGTCCAAGTATGAA ATAAAGGTACTAAAACAGGGTACTATCTTTTATATCGAGGTTTCCTTCTTACTTTTTTGAAATTATCTGGAATTTTCTGA CACTACTTTTCGACAATTGGGAGTTTGCATTGACAAGACATTTGCCTATTGCAGCAACTAGTCATATATGAGACATCAGC TTCTGAGCTAGATATAATTCGAGACATTTCTCGAACATTCCCCTCACATGTGTTCTTCCAACAGAGACATGGACCTGGGC AACGGTCCCTCTACAATGTTTTAAAAGCTTACTCAGTCTTTGACAGAGATGTAGGATATGTTCAGGTTTTACTCAGGAAC CCATGACCGTTTTTTTTCCGCTTCTCCCAAAGTAATTTATAATATTGATTATTTCAAAATGCAGGGGATGGGGTTTTTAG CAGGTCTTTTACTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCC CCAATGGAAGGCTTGTATCTGGTAACAATTTTGTTCCATGAATTCATTTTTGCTGATTATTGATGTTGTCATGTATTAGG TCTGTCTTTTATAATATAAGTTCTAGAAATAATAATCTAAAACGTGTCCTTTACCCAACAACTTAAGCTTTTGGGATAAT TGGTTCATGACACGTTCCCTACAAGGAAAGGAAAGAACTGGATATGTATTAAATTTGCATGGTTGTTTCTATTGTATACT TTCTGTTGATACAATTCTCTATTCAGCATGATCACTACTATTTTGAATGTAGGCAGGATTGCCTCTAGTACAGCAATACC TCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAAGAAATGATAAATCCTAGC ATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCTTCGAATTTGGGATGTATT TCTGTATGAGGTTAGTGTGCTTTCCCTTAAAAGAATCATTTGTTTGTTAGAAACATTGATCTATGATTATGACATTCTTG CCTTCCAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACGATGACTTGGTTGGTATAATG TGACCTTGTGGCTTGTGTTAGTTATGAATTGAATCAAATTTCTACTCATTGTCAGTGTTCTGTTTCTTTATCACAGATTA AACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACGTTATTACCTTTG GCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAAATACACGTTTTC TTCCTTATCTTGGAATTTGAAATGATTATTGCAGGATTAG
CDS sequence (LotjaGi2g1v0059900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGAATTAGGGAGGAGAGAAGGG TTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGAAACATTATCTCAGAAAAAAACCCCATGTTGTTAAA AGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTTTGGCAGTTGATATCTGGAAGTCGGGACCTATTGCT CATGAATCCTGGAGTTTATGAGGTATCCGCATCCCATAGGTTAGTTAGTTATTACGTTTGTGATGATTACTGGTCCAAGT ATGAAATAAAGCAACTAGTCATATATGAGACATCAGCTTCTGAGCTAGATATAATTCGAGACATTTCTCGAACATTCCCC TCACATGTGTTCTTCCAACAGAGACATGGACCTGGGCAACGGTCCCTCTACAATGTTTTAAAAGCTTACTCAGTCTTTGA CAGAGATGTAGGATATGTTCAGGGGATGGGGTTTTTAGCAGGTCTTTTACTTCTTTATATGAGTGAGGAGGATGCATTTT GGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCCCCAATGGAAGGCTTGTATCTGGCAGGATTGCCTCTAGTACAG CAATACCTCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAAGAAATGATAAA TCCTAGCATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCTTCGAATTTGGG ATGTATTTCTGTATGAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACGATGACTTGATT AAACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACGTTATTACCTTT GGCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAAATACACGTTTT CTTCCTTATCTTGGAATTTGAAATGA
Protein sequence (LotjaGi2g1v0059900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKRLDDYEPSPVPSPRAVDRFGFVKQDANTSDGLVKSRSAYDHERIREERRVRKWRKMIGVGGSDWKHYLRKKPHVVK RRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEVSASHRLVSYYVCDDYWSKYEIKQLVIYETSASELDIIRDISRTFP SHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQ QYLSQFELLVREHLPKLGEHFSQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLI KLPFEKLIHALKNFPEDAMNPDTLLPLAYSIKVLILSLHFDLFSLVQTQKYTFSSLSWNLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 189 | 189 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 14 | 116 | 103 | 8.0E-151 | – | |
| PANTHER | 14 | 116 | 103 | 8.0E-151 | – | |
| Gene3D | 54 | 102 | 49 | 1.0E-8 | – | |
| SUPERFAMILY | 68 | 260 | 193 | 2.04E-44 | ||
| SMART | 83 | 323 | 241 | 2.9E-66 | ||
| ProSiteProfiles | 86 | 300 | 215 | 37.2 | ||
| Pfam | 89 | 319 | 231 | 6.7E-58 | ||
| Gene3D | 130 | 221 | 92 | 4.9E-32 | – | |
| PANTHER | 138 | 353 | 216 | 8.0E-151 | – | |
| PANTHER | 138 | 353 | 216 | 8.0E-151 | – | |
| Phobius | 190 | 207 | 18 | - | – | |
| Phobius | 208 | 212 | 5 | - | – | |
| Phobius | 213 | 234 | 22 | - | – | |
| Gene3D | 228 | 363 | 136 | 1.3E-41 | – | |
| SUPERFAMILY | 235 | 352 | 118 | 5.23E-34 | ||
| Phobius | 235 | 274 | 40 | - | – | |
| Phobius | 275 | 293 | 19 | - | – | |
| Phobius | 294 | 346 | 53 | - | – | |
| Phobius | 347 | 366 | 20 | - | – | |
| Phobius | 367 | 381 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0059900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…