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LotjaGi2g1v0119900.1

Overview

Field Value
Gene ID LotjaGi2g1v0119900
Transcript ID LotjaGi2g1v0119900.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description mRNA decapping protein 2; TAIR: AT5G13570.1 decapping 2; Swiss-Prot: sp|Q8GW31|DCP2_ARATH mRNA-decapping enzyme subunit 2; TrEMBL-Plants: tr|A0A0L9TCG1|A0A0L9TCG1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0119900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:44190112..44198289) extracted from Lotus japonicus Gifu genome v1.2.

ATCACAACACAAACAACCAGAAAAAAAAAGTGCAATATTTTAAACTTCATTTTTTTTCATCCTAATTTCATCCTACGATA AATCCCCGGCCACATACTCATAATTTAGGAATATCCAAAAAAAAATTCCATGTAGGTGTAACATAACTCAAAAAGAAAAT TCCGAAAGAAGATTGCGAGATTGAAATTGAGATCGGGCGAGAACCGAACCGGTAAAGAAGCAGTTGAAGAAAGAAGCTTT TTCATTCATTCTTTCATTTGTAGTCGCATTTTTGGTTTTAGGGTTTGAGAATCTTCACACACTGGGAAGAAAGCAATGTC AAATCATCACCGTTCTACGAGTGCTTCATCGAAGAACGGTCTTCCTCCTCAAGAACTCCTCGACGATCTCTGCAGGTTGG TGTTTCTTTTTCTCTTCCGCTTTCGATTTTCTCGCTACTCTTGTTTGGTTTCCCAGAAAATGTAGGATAAAGGGTTATTC GAATAGCCATTGTTTCGTTTTCACTCTTTTTTAAAGTTTCTTCAATTTTAGTCGCATTATGTTAGTAAATGGTACTGTCT TACATTGCAATTTTTGAAAGAAAAGGGTTCTGATGGATATTTTACTTATCAGTAGAAACTGGTAAAGGTTCAGTCTTGTA ACTGCTTAGTTATGTGTATCTTACTGTTACGAAAAGGTTGGATTCTTTAGCAGCTGCTACAACCATTTAATTATTTTTCT TCTGTAGCAGAAGAGATTCATTGAAATGATTTGACATGTATGAATATTCTGTTTATTTGCACTTGGTCATTTTCATACCT GGGCCCCTTAAGCATCTAGTCCAGGGTTCGATCCTTGGGTGGTGCGAATGGAGAAGGATTTGTTGGGAGTTAGAGCCTTG AGGGGTTAGTCTCATGGCTGCGGACCGACTGTGGGAAAACCTTGGGGAACCAAAAAAGCCATTTTCATTAACTTTCTTCC CACAATTTGTCTTTATAATTGTGTCTTCCTATGTTTTTGTTGTTTTTCTCATATAAGGCTTTTTTTTTGTTTATGTTGCA GCCGATTTGTGCTGAATGTGCCGAAGGAAGACCTTCAATCATTTGAAAGGATCTTGTTTCTCGTGGAGTATGCACATTGG TTTTATGAGGATAATTCTGTAGAAAATAATCCATCTCTGAAGTCGTTAAATCTGAAGGAGTTTACATCTTTATGTATCCT TACTACTGCTTTCTTTGTTTTCATTCCTGTATTTAACATGGCAGAAGTTTTTTTTCTCTTATTACTTTTGACTATAATAA TTCATCAGCAATCCTTTCATGCACTGGGTTCTTTCTTACTTTTCATCTAAAAGGGAAAATAACTTTTTTGTGGCCTAGTT TGGAGGTGAGATGAAAGAATGTGAGCAGAAGGACATGGATTATCCATCGAAATTTGTTCCCAAGATTGAAATCTTTAATT TGGTTAGAATTTTGGTTGCTCCTCAAAATTTACGTGTTCTGTTCTTCTCTATCTCTTGTAATATATGAACCAAAACTTTG TAAACCAATCTAAATTATTCTCTTTTATTTTCTCTAATGTTCTAGCATGGAGAATTTTCTGCATGATATGGCTCAAACAA ATGTAGGCAGGCACCTATCTGCATCTGGAATTCCCTGTCCCCTCCTCATCTCATTTTTTTCTTAATAAAATCCAACAAGT TGTTGTTTATGGGTTCATCAATTTGGTTGGGTTTATGCTCAGCCGTGCTCACATGCTTGCTTGTACACAAATGAAATTGA TATAAAAGGCACATCTGTCTATGCTTTACGTAAAAAGTGCTAGTAGTCAATGCAGTTTAGTTTTATTGTCATACTGTCTC TATTCTGATCATCTTATAATCAGACATTATTTTCCTTAATATTTAGCAGTGTTCAATAGTTGTGATGTTTTGAAGCCTTA TGTGGCCCATATAGATGACATCTTTAAGGACTTCACTTCCTACAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTG ATGAAACCTATGAAAGGGTAAGCCTTAAAATATAGGCTCTTGGCAGTACTTAAGACAGACCTATTTATTCACCTTCTTTT CTAATGCCAGTGGGCTTACACTTTATGGTATAACCATGACCCTGAATCAATTTGCATCCTAGAATATGTTGGTTTGTTCT CAGAAAATTTTCAATTCATTATGCTGTTTGGTTAATTATTACTATGATGAGTTTGTAGGTTGCATGTGTTTAAAATCTCT CTTGTAAATTCCAAATTATCTATGTTTTGTATTGGCTCTTAGGAGGATTGATGCTGTCAATTGATGGCTATTCAACTATT CAAGTAATTAGGGAAAATGTCAAAGGTAAACTCTGAACACTTATGTCAGAGTGGTGATGAAGGATGAAAAAAGCCATAAA CTTGTCTAATTTACATGTTGGCTAAATATTTTTGGATCTCCTAGATATGGAAGATGAAATATTCCTTTGTCACAATATAT ACTATACATGCAGTCAATTCTTGACTTGGTTATGCATATTTTTTTCATTACTCAACTTGGTGAGCTTGTAGTGAAAAACA AGGCATAGTAAGGTGATAGGAAAAAACCCCCATGGGTCCATGTTACTGCAGTTTAGAGCAAATTAGTGGGTTAGAAACTG TTGGGGTAGTTATTGGGTTAGTTATTATTAGTTAGTTACATCAGTTTATGTTAGTTATGTTCTACCAAAAATTGCCTAGG GGTGGTTATTAAATTTCTGGTTATTAAATAGGAGTTGTGGCTGTTAGTTTAGACATTCAGAAATTCATAAGTGATTTAGT AGGGAGAGAACTGGCTCTCGAATTCCAGAACTAGGAGAGGCTGGCTCTCTAAAACCAGTGCTTGTATAATTATTCAGTAA TTCCAATCAGTTCCTATCATAAGGCCATTAATAAGCCATCATGTAACATCTAAGCTTTAGGATGGTTGGTCCATGGCATG GTCTAAAATCGTCTTTGCGGAGGTGGTCAAGATTCACCCCCAATCTTATAATGAAAAATTGAGTTTCAGGCACAGGTTAC AAGGACTTGTTCCTTGTTCACCCTTCAAGTGCAAATGACTCTTGCATGATGAACTCCCAATGCAGCAAATAATTGTTAAC TAATTTCGAGTTAAATCATTACATAATGCAACCTGTCATCATGAAACATGATTTATTCTGTCTGCCACCAAAATTTAAAT CATTGCATAGTGTGTCGTTCGCATTTTCTGCATTTACTATCCTGTCTGCCATGTATGGCGGCATAAGAAGCTTTATTTTT AGCAGTCAATGGTCCCACACAGCTCGCCCAACACTTCTCTTTTGGATCTGGTTTTATATCTAGCATTTTCCCCTTGTGTA GAAGTTTCCTTTTGTGAAGAGGGGTTTCTGGTGACTGTCTTAGTTTTCTCCAGCCTGTTCTTCCTTTTCTCAGGCTGCCA CTTTTCCATCTCCTTCAGTTTGTTCTTGTTCAGTAATCTGCTGAACGCAAGGTTTGTTTTTTTCTCTTCCAAATTCCAAT GGCTGTTTGGAGCCCTTTTTCTCTCTGATGACTTCTTCGCCACCTTCTGTAGCACTGCATTTGCCCTTTGTGGCTAATGA CCCATGGCTTCAGAACCTCCTGTAAATGGACGCCTATGTTGATCTCTTAAAGTGGTTTGAGGTGTGTTAGGCCTCAGGTT CCACTGTCTCTGTTGCACAAATTGGTAATATCTTTGCTTGTATTTCCCAGTCATCCTATGTTGGTCCATTGTTTCTGAAT TCTAGTGCCACTAATAACATCTTTGGTGATAAATCCTTACTCTCAACTTTCTACCTTGGTTATTTGCTCACATTTACCTT GACTGGTGCTTCCCAAACATAGTCCAAAGAGTTAAGGTACATCCTCTTTCCTCCTTGTCTGGGGATTCAATATAATATGT TCTAGGTTCCTTGTTTAATTTACTTACTGGTAGCTGCTTGACTTGCTCCCTTGACTGTGTCATCTCTTCCACTAAAGATT TTGTTTTCCATTAGGGCTAAGTTTGGGTTCGTATGTGAGTCCAGTGGCCTCTACTAACTCCCGAATCCATTCCTGCATTT GGATTGCGGGTTGCCTCAGATTCACCTCTCCCAATAGATGTTCATTTAGAGGTGTCAAGGAATATGAAGAAGTAAAGGCT ACTTATGTCTTTATGTAACTTTAGTATTACTATGAATAGTTAATTAGGGTGCAGTTATGTGTGATCTTTATTATGGGCTG GAGAAATATTCTTCTCCACAGAACCTCTTCTCTTTTTCCTTGAAGTCCTAATGTTTCTCAACAGGTGGGGTGTTAAGTAA TTCAATTATAAATCGAAATATACATTAGTTCCTTAAGAAAAGCATATGAATTTTATCAGAGAAGGCATTACTTAGTTTGT AACTTGCTATCTAAAGTTGTCACCTTTTGTCAAAGAGAGTGTCATTCATATATTTAAGCTTATGTGTACTACCCTTAGAC ATCAACATCTGTTGGTTCAGTAAAATAATTTTCCAATGCAGCTGTTGGGACCGAAATAGTTCTATCAGTATTTATTGTCT GCTAAGCTGTAGTTACTTCCATGTCTGCTGTTGACAGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCC CTCGAGGAAAAAAGAGCAAAGATGAAGAAGATCATGCATGTGCCGTAAGAGAAGTAAGCATGATAATTTGGAGTTGTCAC TTTCTCAGTATCATCATAAATGACTCTGTCCATGTTCTTTGGTCTCTTGAAAATAGTTACCCATTTATAGCAAAATTGAA ATATATTGAAAGAAAATAACTAAAAATAATGTACGTTGTATCTCACTAGGAATCTTGCCTTAGTTTTTCCATGTTTTTTG TTTGTGGTGAGTGCAGGTCTTGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTTAACAAGGATGAATACCTTGAAGTTA TTTTTGGGCAACAGAGAGTGCGGCTTTATATTATTGCTGGTGTGAAAGATGATACAGCATTTGCCCCACTTACCAAAAAG GAGATAAGTGTATGTGATTCTTTTTAAGAATTTACTTTTAAAGTTCCTATCCTATGTGCTTTTAAGTTTTTGGAGTCATC ACTAATACCTCTAGTAGTAGTTAAGATAAGATAAGAATTTCCATTGAGAAAGGAAAAGTAGTAGTTTAGGTGAAGAGCAT GCTGAGAAATTATGTGTTGTGTTGTGATATCTGTGCAGGAAATTGCATGGCAGCGCCTTGATGAACTTCAACCAGCGGGT GATGAAGTGATATCTCGGGGGAGCACTGGACTTAAGCTTTACATGGTGGCCCCTTTTCTGGCGTGAGTACAACCTCTATG GTTTTGATAGTTTTGGTGAATGTTTCCCATGTGTTGTCAAAGTTCAAAATGATTCACTGCCTTATAACAGATCATTGAAA TCGTGGATTTCAACACACCCACCTCCTATGGCTCCAAGGCATGATTTGCCTCTTAAAGGTAAGTCCACTTTTAATACAAA TGCTGGTCAGCTGCAAACATTATTTGAGATATTAAATGTTGGAGTTATAGGGTTTTAGAGAAGGAATGATGAAAGAAAAA AAATAAGACATACTATTATTATTATAACAAAAGACAGAACTAACCATTATCTACAGTTCTACACTAATACTAGAATTGTA ATAAGGTACTAGATTTCTAATCTCAATTAAATTAGGAACAAATAACAAGATAAGAAGAAATTTGGAAACTAACGCTAAGA GATAATCTAAGATACTTAAGATCCACATATCATAAAATTTATTTGATATAATCTAACATTGTTAAACTGCCTGGAGGTTA TAGGTCGAGTTTCATTTACTCAACTCCTGGCTGTCTTTAAACTTGAGTTAGTTTCCATAAGCTAGTTCAGTGTATTGCAC TAACATTATTTACATTGCAGTCTCAGCACATCGTCTTGAATGATGATTTTAAGTTGAGGTATAGTTCAATCAAGATTTGG GATGTTAGATGTATCAAAATTGGATTGAGTTAGCTACATTAGTATGCAGTTTTATTTGCTACTTAAGGTTTTTAGTAAAA AGGATTTATTAATAGGTATACTTAATTACCAATATACCATGATTAGGAGGATGAATATGATGTCTCTACAAAAGCTAAGT GGATCAGAGAAAAGACTAAAGTAACTAGACATGTCGAACTTTGAGCTTAGTAAGGCAAGATCTGGATTGTAGAAATGAGA TAGGTATTATTGCAAATAAGCCTGGGTGAATGATATTGTGGAATGTGGATGGCAAAACGGTAGGAGATAGGATCATAGCT TTGAAGTCTATAGTTGAAGAAACTTTTAATGTTAGTGCATATGCACCACACAAGTAGGGGTAGAAAAGCACCACAAGATA AAGTTCTAGAGGGTTTAGAAGGTTTTGTTCAAGAAATACCTTTCTGACGAAAAGGTTTTCCTCGGAGATGATCTAGATGA TCATGGGTGTTAGGAATTTAGAGGGCATGAGATGTGCATGAGATCGATGGGTATGGTATGAGGGAAGCAAATACAAAGGG TATAGAGAGTCTACTGGTTGCATTTGTTTCATGAGAAAAGCACCTTAATTTTGAAAATAATCTTATATTTTTACAATTGC TGAAAGCCTTTGCTTTTTTGTGAAGGAATTTGCGTGTGGAAAGCAAAGCATAGTTCTACTGGAAGTAGTTGCATAGTAAT GGACATCCAGCCAGCTAAGCATGAACCTGAGCCTGTTGCTGAGGGGCCTGGCAGGAGCTTAAGGAATTTCAGATTTGATA CTGCTTCAATTTTACAAGCAATGGGGGCTTCCTTTTCTTCTTGAAAGTTCAGCAACCTTCCTGTAAAGTATCCCTCGACT GAATTGACTTCCCTCATTTCACTCCTAGTCAAAGTTGGTAGCAATCACTGTCTATGCTCTAATTAGGTTTCTGTACATGA TGTTCCCCAAGTTGTCTGGTTGAGTAATATGTACATTGTTATGTACAGGAATTATTTGTACCTAAAAAGTGTTATCAGTT AGTTCGGTGTTATTTGTAGAACTAGATAAATAGCCCTTGTAAAAGTTATGATGCTTTCAATCAGCATTCATTTCATACAA TATTAACTCAAACTCGGTCTTTGAATGAAACTCATTTAGATTGTAATGCCTTTTGTGAATTTTTACAATGCGGCTATGTT AGGATAGGAAATCCCAACAAGTGACAAACAGAAGGAATAACACAGTAAATCAACAAGATTGTTTATTAATGGTTGTAAAG AGAAAATACAGAGAAGGAATGGAATCCAATTCTGACCAGAGCACTGCTCCTAGAGGAAGCTCACAGCTACCTCATCTTGA CACTTAACTAACAAACTGAATGGATAACCTCTCAACCTCTCTCTATTTTCCTTATAAGGTGGATTATACAATCTTCCTTA CTCTCTCTATTCTGTTAGCTTAATTACCCTGATGTTCCCTTCTTGCCCCTCCTTGAATAAACCCTCCAGACTCTTGGCCC ACTTGGTCCTTGGTGGATTAATGCTTCATTAGGCCCATCAGGCAAACAAGCTCTATCAGGCTACTTCATTCCGACTTTGC AAGTGGAAGTGGTAGATAGATTTGACGGTGTTGCTTAATTCTATACGAAATAAATGAAACACCTGCCCCCATAATATCCT CAAACTTTTTTGGTTTTATCTAATAGGACATCCATCTATCTTTGTTTTTATTTCTTACTTTTTAAAAAATATATTTTAAT TTATTTTGGCTTAATTAAGTTTTTGGTTTCTAACCTTTGCCATATACCTGATTTTAGTCCCTAGTCGGCCTAAGTTTGGA AGTGGTCCCTAACGTTTGCATTAATGTTTGATTTTAGTCCTTTTGGCCGGTTGGGTTAACGCCAGAGCTCCGACATGCTA ACGTGTGCCTGCCACGTGATTTAATGAGTCCACATGACTTTTTTTCTTCTTCTTTTCCATTTAAAAAAAATTAAAACATA ATTAACCTCACTAATTAATCTCTTCATTGACTTGATATTGTGGTGTTAGTGGAGACTCATTGTCAATTCCATAAGGCTTA GAGGTTTTGGCGAAGGCAGGGTTTCTTGCCTCAGTGAATTCAAATTTGAGATTTTATGGTGCATTAAAGGGGAAATTTTG TGATTAATGCACTTGAGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0119900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAAATCATCACCGTTCTACGAGTGCTTCATCGAAGAACGGTCTTCCTCCTCAAGAACTCCTCGACGATCTCTGCAG CCGATTTGTGCTGAATGTGCCGAAGGAAGACCTTCAATCATTTGAAAGGATCTTGTTTCTCGTGGAGTATGCACATTGGT TTTATGAGGATAATTCTGTAGAAAATAATCCATCTCTGAAGTCGTTAAATCTGAAGGAGTTTACATCTTTATTGTTCAAT AGTTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGACATCTTTAAGGACTTCACTTCCTACAAGGTTCGAGTTCC TGTAACTGGGGCAATAATTCTTGATGAAACCTATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTT TCCCTCGAGGAAAAAAGAGCAAAGATGAAGAAGATCATGCATGTGCCGTAAGAGAAGTCTTGGAAGAAACAGGTTTTGAT GTTTCAAAACTTCTTAACAAGGATGAATACCTTGAAGTTATTTTTGGGCAACAGAGAGTGCGGCTTTATATTATTGCTGG TGTGAAAGATGATACAGCATTTGCCCCACTTACCAAAAAGGAGATAAGTGAAATTGCATGGCAGCGCCTTGATGAACTTC AACCAGCGGGTGATGAAGTGATATCTCGGGGGAGCACTGGACTTAAGCTTTACATGGTGGCCCCTTTTCTGGCATCATTG AAATCGTGGATTTCAACACACCCACCTCCTATGGCTCCAAGGCATGATTTGCCTCTTAAAGGAATTTGCGTGTGGAAAGC AAAGCATAGTTCTACTGGAAGTAGTTGCATAGTAATGGACATCCAGCCAGCTAAGCATGAACCTGAGCCTGTTGCTGAGG GGCCTGGCAGGAGCTTAAGGAATTTCAGATTTGATACTGCTTCAATTTTACAAGCAATGGGGGCTTCCTTTTCTTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0119900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNHHRSTSASSKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFN SCDVLKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACAVREVLEETGFD VSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDELQPAGDEVISRGSTGLKLYMVAPFLASL KSWISTHPPPMAPRHDLPLKGICVWKAKHSSTGSSCIVMDIQPAKHEPEPVAEGPGRSLRNFRFDTASILQAMGASFSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23114
14 256 243 2.4E-121 –
SUPERFAMILY
SSF140586
14 103 90 6.8E-33
IPR036189
PANTHER
PTHR23114:SF17
14 256 243 2.4E-121 –
SMART
SM01125
19 103 85 7.9E-44
IPR007722
Pfam
PF05026
20 102 83 2.1E-28
IPR007722
Gene3D
G3DSA:1.10.10.1050
22 104 83 1.3E-86
IPR036189
ProSiteProfiles
PS51462
104 234 131 13.382
IPR000086
Gene3D
G3DSA:3.90.79.10
105 245 141 1.3E-86 –
Pfam
PF00293
106 217 112 2.5E-14
IPR000086
CDD
cd03672
106 247 142 3.94512E-75 –
SUPERFAMILY
SSF55811
106 215 110 6.5E-22
IPR015797
ProSitePatterns
PS00893
137 158 22 -
IPR020084

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0119900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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