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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0128900 |
Transcript ID | LotjaGi2g1v0128900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic; TrEMBL-Plants: tr|A0A089WZX0|A0A089WZX0_KALFE Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0128900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47119678..47120415) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCCCCTCCACCCAGGATAGTGGAAGGATCACCATGAGGAAAACAGGCGCCAAATCCAAACCTGTTTCTTCTGGAAG CCCATGGTACGGTCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAGTCTCCATCCTACCTTACTGGTGAGTTCC CAGGTGACTATGGCTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACATTTGCCAAGAACCGTGAACTTGAGGTCATC CACAGTAGATGGGCCATGTTGGGAGCCTTGGGCTGTGTTTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAATTCGGTGA GGCTGTGTGGTTCAAGGTCGGGTCTCAAATATTCAGCGAGGGCGGACTTGACTACTTGGGCAACCCAAGTCTAGTCCATG CACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCTGTTGAAGGTTACCGTATTGCAGGTGGGCCA CTTGGTGAGGTGACTGACCCACTCTACCCAGGAGGAAGCTTTGATCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGC AGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGATTAGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTAA CCGGAAAGGGGCCTTTAGAGAACCTTGCTGACCACCTTGTTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACCAAC TTTGTCCCTGTAAAGTGA
CDS sequence (LotjaGi2g1v0128900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAACAGGCGCCAAATCCAAACCTGTTTCTTCTGGAAGCCCATGGTACGGTCCAGACCGTGTCAAGTACTTGGG CCCATTCTCTGGTGAGTCTCCATCCTACCTTACTGGTGAGTTCCCAGGTGACTATGGCTGGGACACTGCTGGGCTTTCTG CTGACCCAGAGACATTTGCCAAGAACCGTGAACTTGAGGTCGGGTCTCAAATATTCAGCGAGGGCGGACTTGACTACTTG GGCAACCCAAGTCTAGTCCATGCACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCTGTTGAAGG TTACCGTATTGCAGGTGGGCCACTTGGTGAGGTGACTGACCCACTCTACCCAGGAGGAAGCTTTGATCCATTGGGCCTTG CTGATGACCCAGAGGCTTTTGCAGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGATTAGCGATGTTCTCTATGTTTGGA TTCTTTGTTCAAGCTATTGTAACCGGAAAGGGGCCTTTAGAGAACCTTGCTGACCACCTTGTTGACCCAGTCAACAACAA TGCTTGGGCCTATGCCACCAACTTTGTCCCTGTAAAGTGA
Protein sequence (LotjaGi2g1v0128900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKTGAKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVGSQIFSEGGLDYL GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG FFVQAIVTGKGPLENLADHLVDPVNNNAWAYATNFVPVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 20 | 20 | - | – | |
Phobius | 1 | 152 | 152 | - | – | |
PANTHER | 1 | 67 | 67 | 1.4E-128 | ||
PANTHER | 1 | 67 | 67 | 1.4E-128 | – | |
SUPERFAMILY | 16 | 196 | 181 | 1.83E-58 | – | |
Gene3D | 24 | 66 | 43 | 5.2E-15 | ||
Pfam | 34 | 67 | 34 | 7.8E-7 | ||
PANTHER | 67 | 199 | 133 | 1.4E-128 | – | |
PANTHER | 67 | 199 | 133 | 1.4E-128 | ||
Gene3D | 67 | 192 | 126 | 1.8E-54 | ||
Pfam | 88 | 165 | 78 | 2.5E-22 | ||
Phobius | 153 | 173 | 21 | - | – | |
Phobius | 174 | 199 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi2g1v0128900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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