Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0128900.2

Overview

Field Value
Gene ID LotjaGi2g1v0128900
Transcript ID LotjaGi2g1v0128900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic; TrEMBL-Plants: tr|A0A089WZX0|A0A089WZX0_KALFE Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0128900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:47119678..47120415) extracted from Lotus japonicus Gifu genome v1.2.

CTTTCCCCCTCCACCCAGGATAGTGGAAGGATCACCATGAGGAAAACAGGCGCCAAATCCAAACCTGTTTCTTCTGGAAG CCCATGGTACGGTCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAGTCTCCATCCTACCTTACTGGTGAGTTCC CAGGTGACTATGGCTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACATTTGCCAAGAACCGTGAACTTGAGGTCATC CACAGTAGATGGGCCATGTTGGGAGCCTTGGGCTGTGTTTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAATTCGGTGA GGCTGTGTGGTTCAAGGTCGGGTCTCAAATATTCAGCGAGGGCGGACTTGACTACTTGGGCAACCCAAGTCTAGTCCATG CACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCTGTTGAAGGTTACCGTATTGCAGGTGGGCCA CTTGGTGAGGTGACTGACCCACTCTACCCAGGAGGAAGCTTTGATCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGC AGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGATTAGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTAA CCGGAAAGGGGCCTTTAGAGAACCTTGCTGACCACCTTGTTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACCAAC TTTGTCCCTGTAAAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0128900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGAAAACAGGCGCCAAATCCAAACCTGTTTCTTCTGGAAGCCCATGGTACGGTCCAGACCGTGTCAAGTACTTGGG CCCATTCTCTGGTGAGTCTCCATCCTACCTTACTGGTGAGTTCCCAGGTGACTATGGCTGGGACACTGCTGGGCTTTCTG CTGACCCAGAGACATTTGCCAAGAACCGTGAACTTGAGGTCGGGTCTCAAATATTCAGCGAGGGCGGACTTGACTACTTG GGCAACCCAAGTCTAGTCCATGCACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCTGTTGAAGG TTACCGTATTGCAGGTGGGCCACTTGGTGAGGTGACTGACCCACTCTACCCAGGAGGAAGCTTTGATCCATTGGGCCTTG CTGATGACCCAGAGGCTTTTGCAGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGATTAGCGATGTTCTCTATGTTTGGA TTCTTTGTTCAAGCTATTGTAACCGGAAAGGGGCCTTTAGAGAACCTTGCTGACCACCTTGTTGACCCAGTCAACAACAA TGCTTGGGCCTATGCCACCAACTTTGTCCCTGTAAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0128900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRKTGAKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVGSQIFSEGGLDYL GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG FFVQAIVTGKGPLENLADHLVDPVNNNAWAYATNFVPVK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 - –
Phobius
CYTOPLASMIC_DOMAIN
1 152 152 - –
PANTHER
PTHR21649
1 67 67 1.4E-128
IPR001344
PANTHER
PTHR21649:SF88
1 67 67 1.4E-128 –
SUPERFAMILY
SSF103511
16 196 181 1.83E-58 –
Gene3D
G3DSA:1.10.3460.10
24 66 43 5.2E-15
IPR023329
Pfam
PF00504
34 67 34 7.8E-7
IPR022796
PANTHER
PTHR21649:SF88
67 199 133 1.4E-128 –
PANTHER
PTHR21649
67 199 133 1.4E-128
IPR001344
Gene3D
G3DSA:1.10.3460.10
67 192 126 1.8E-54
IPR023329
Pfam
PF00504
88 165 78 2.5E-22
IPR022796
Phobius
TRANSMEMBRANE
153 173 21 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
174 199 26 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009765
Biological process Photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0128900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…