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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0167700 |
| Transcript ID | LotjaGi2g1v0167700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DDX47; TAIR: AT5G60990.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10; TrEMBL-Plants: tr|K7KC67|K7KC67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57879867..57885344) extracted from Lotus japonicus Gifu genome v1.2.
CAAATAGAAACAGATAGATAGAGAGAAAGGTTGCATAATTATAATGATTGTTATATGACCTTGATGATTAGTGGATACAA CAACAACAACAAAAGCCGTATCCCGAAAATCACAAAACCCAAAACCCAATAATTATGAGGGACTTGATGAATATTGGATA TTGGGCATTATTTTTTTATATTGTTCTAGTTCATTGCATTAATATTTTACTACATCAGTTCTGGAGGGTTGCATGATATT AATGGTGCTTAAACTCTACTAAATTGTTGGTTATTCTTTGTGGTTTTGTGTTTTCACAGGAAAGGATGTCATTGGACTTG CTCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCTCGCCCGAATCAT TTCTTTGCTTGTGTGATGTCTCCCACAAGGTTTGATACTCTAATAATTATCATGATTTGATTTTCATATAATTCAAGTTC TACTGAAAGTGAATGTTTTGACTGATATGTAACTAGTATTTTCCTTCTGTTTTTCACCATTTTCTTTGATCTAGAGAGCT TGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGCGCTGTGGTGAGTTCTAATTTGC TTTTTGGACTTCTTTAAGCATGACGGCTTCCTTTTTACTGCATAGCTTAAAGTTTGTTCTGTTTGACATTTTTTTCTATA GCTAGTTGGCGGGATAGACATGGTACAGCAATCAATCAAGATAGCTAAGCAACCTCATATTATTGTAAGTGTTACAATTG TTGTAGCCATGCTTTGAATTCACTTTATTGACGTACATCAGGAGTTATTGGGGACTTGGGGTAATGATTGATTGATATCC AAAATATATTCTTGCATATGTGGAATTGTGGATAAGACATTTACCTATGTTTTGCTGAGGAAATGCAGTATTTTTTTCTG TGTTTATTTTTACTTATATCAAAGTCATACTCTTGCAGGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAAAACACC AAAGGATTTTCTTTTTCTCGACTAAAATACTTGGTAAGATTTCTACATTGCTTTGATTTAAGTTCAGGTTTTAGTATTCA TGTTAGTTTAATGCTTTATTCTAGTCTTATTGGTTTTTTCTTGATGCATTTTGGTGAATGTTTTTAAATGGTTATGAATA CTATTGTTTTGCAGCAAAACTGAAAATTTCTCATGTTGAGCCGGATTTACTTTAATTAATTAAATAATAATTTTCATGTG AAATGAAAGGCATGTGGCTAGATTTACTATGCTTCAATTTACATTAGTGATGGAAAATTTTACTGTTTGTCCGGATACAA TTTGTGGATTGAGACAAACGTATGACAAATTTCAGTTCCATTGGAACAGAATTTTGCTGTGTACCTGACTCCTATTATGA CCAGACTTGGATGATTGGTTGATGAGGCAAAATACAACCGTTTTTAAACATAATTATTACTTTCACACTAAATAACAATT TTTTTCGTCGAACCAAACATGAGGACAATTCTATTGCCTTTAAATGCCCTCCTCAACTTTTCTGATCTCTATAATCCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCCCCGTATTTGTGTGTTCCAAAAAAGCATAGTTTA AGTTTAGTTCACTTTATGCATAATCTTCCCACTCAGTTTTCTTTTTTCCATGGTAAGTTTGATCTGCCTATTTTGTTTCA TTGAAGAAGTCTTCACTAGTCATTGTTTGTAGTCAATATATTTAGAACTGTGACTGAGAATTCGTTGTTCATGTAGCTAA ACTGTGACATTTATTTGATTGGAGAATTTGATTATTTGAATATGGTTTTTTAATTGATGTTAGTTTGATTTATTGTTGAG ACATGCATGTTTCTGCTTTGGTTTAAGTATATCTTACACGGTTATGCAGTTATGTATAAAGCTAATTAACTGCTGATTTG AACATGTCATTTCGTTGTAGGACACCTTGTGTTCTGCATTGATGGATGCTTGGACTTGTTTGTAGATTTTACAAATAGAT ATATTTAAATAATCTATTTTGCTGTCTACCATGACACGTGCCCATCCTCATATTCAGAACATACATATAATCAGACTAGC CTGACTACTGAGTTTTGAGCAGGTTTTGGATGAAGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGA TTTTACAAGCGATTCCACGTGAGCGGAGAACATTTCTATTTTCTGCTACTATGACTAAGAAGGTATATATGAAGGTTTAT TAATTACTGCATACTTACTAAATATATTATTTATTTTTGACATTTTTTTGTTCTTGGCATTGGCCATATATGATTTCTAA GTAAGCAAGTGAAGTCCTTTTTGTACATATTCTAAGATATGGAACCTATTGGATATAGGCCCTTTGAAAAATCTTGTAAG GTTATAGCATAAGATCTGGTTGTTGGAACTTGGTTTATATCTTTTTATTTTTAAATAGATTTAAAAAAACATTCAATCAT ATGATTTTAGGCCTAATATCTTATATTTTGACATGAAAACATACAGTTGCTCCATTGAGAACTGTTGAAATGATATATTG ATAATGAACAAAATGGTTTTTGTGTGCTGCTTATACACTTCAGATACTTGATTGTTTACTTGTAGTCTTGTACTCATTTA TAATTTTATGTTGCTAATAGAGCAAGTTGCACTCTTGCTGTTGCAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATC CTGTGAAGGTACATCTGTAATGTCTAAATACCCTTTACTTGAGTGATGTTTAAATTATACCGCCTTCCCCTCTATTTCAA AATTTATTCTCCCTTCCGCTTAAAGATTTTATTCGTTACACTTTTGTCTATTTTAATAATTTAATGTGAACAAGCTTCTT AGCTCTCTCTCCCTCCTCTGTCCCTCCCTCTCTATGTGATTTTTAGTGTCAAGGGCAGCTAGTACCTCTACTAGACATGA AAAGAAATGAAAACTTCGGGAGAAGTTTGAAAGTTGATATTAAATGGCTCTCAAATTCATGTCATCTTTTGAAATCCTGA AGTGAATAATAATAGGGTGTGGAAAATTAGCTGCAGATGATACTCAAAGCTGCACAAAAAGGGAAAAAGGATGTCCTTGA GTGCACAGTATCTCACCACCACTAAGTGTGTTTGGATGCCAGTTGAGTTAGTGTGAAGGAAAATTCTCGATCCATAAGAA TTGTTATGTTCACTTTTTGTCTCAAAGTGAGTGCTAACGGGTATCCGAACATAAGTGGTTCATTCACATTATAGTGCGGC ATATTTATCTATTAGGAAGGGGAATGTAATTTTTAAAGTTAGAGGGGAAGACTGTATAGTTGAAGCATTTTTTAGAGGAG GGAAGTGTAATATATGTGTGTGTGTGTGTGTCTTCCTGATATTATTAACTATTTTTCTGTTTATTCAATTTAGATTGAAG CAGCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGTTTCTGCTCTC TTGTTAAAAAATGTTGGATTTAAAAAATGTCTTGGCTACATCATACATTGAATTTCTTACTACTCATGGGTTCTTGGCCC AATGAAGGCTGCGTAATTACTACTTTACAAAATTATTTGAAATGTCATAGAATTACATTCCATTTTTTAAATGAAGCATA TCATTGAAACGAAGTCTCTGTTATTTTGCCACAGCTAAGTTTTCAGTGAGGTCTTCAAAGATATAATGTTGTGAAAGAAT TTCATGAAGTTGGCACCATTTTCCTTTTAAAACATCTGATATTTGCATCATGTTATTAGACTGTGTTTTAAACTTATAAT AAATTTGCTATTTGGAATAGAATTAACACAAATTCATGCATTTTGGGTTTAATGAATCATGACTATTATCTTTCATGCTT GTGATGACAGCTTATTAATTGTTTGTCTTACAGGATTGTTACCTTGTATATATTCTCACTGAAATGGCTGAAAGTACGTC AATGGTGTTCACTCGGACATGCGATTCAACCCGGCTCCTGGCTTTGATTCTTAGGAATCTGGGTCTAAAAGCCATTCCAA TTAATGGTCATATGAGCCAAGTAATTGTTCTAGAAATCTTGTATTGGAATTTGTTCTAAATTTGTCGTCTTTCCTTGGTA TGGGAGGGTCCTATTGGGGGTGCAGGAAGTGATTGTCTCTGTCACCTTAATGATTGGTGTGTGCCAATGGAGCATCTCTA ATTTTTATTTATAATCTTTTGACAGTCGAAGAGACTAGGAGCGTTGAATAAGTTCAAGTCGGGGGAGTGCAATATTCTCC TTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCAACGGTCGATATGGTGATTAACTATGACATTCCCACAAACTCC AAAGTAAGATGTGCTATGATTTACTTTTATACATATATTGACATGTTTTATTACAATTATATTTAATCAAAAGTTTGCAG TTAAGTTAATGTAACTATAGGAATTTGTTAGTAATTTTATGGTTATACATGACTCAAGTACTTGGACTATGAAAGGAGAT GAAAATTTTTAGAATTTTTTAGATTTAATATTAACTGAATTCTGATGTTGTGAACTACAGGATTATATACATCGCGTTGG AAGAACTGCTCGTGCAGGGCGCTCTGGGGTTGCCATTTCCCTTGTGAATCAATATGAACTGGAGTGGTATATTCAAATAG AGAAGCTTATAGGTAAGTAGTACATGATATGCTTTTTTTTGACATTAAGTAATGAAAGTTTCTCAATAAATAACAAATGC AAGTGTATTTCAGGCAAGAAGCTACCAGAGTATCCTGCCCAAGAAGTGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGA GGCCAAAAGATTAGCAATGATGGTAAGACTTTTATTGAGCTCAGTTACATGTTAAACTATTTTTTCTGTCCATTTATTTT GTAGAGAAAAAATAAGTTGGGGAGGTTTGTGGGAAGTGGAAGTTTTTTTACCTACCTTATTTGAATTTCATTTTCATTGG GTACAATACAAGTAACGTGGTAATGAGGTTTCCAGTATTTTCTTAATCTAGTTTTTAAGTGCTAGCAAAATTATGATGGT TGAAAACAACTTTTTGCATATAAAGATACTCGAGCTTGTGATTATTTCTGAAATTAGTAAATTTTGATGAAACATTTGAA GTTGTTCAATCTTTATGCTCTTCAATTGTTTTTCTAAGTACTCATGTGTTTATTGTGTTTTTAATTGTTAAGAAAATGAA GGAAGCTGGAGGGAAGAAGAAACGAAGAGGAGGTGAAGATGATTTAGCTGAGGAGGATATTGACAAGTACTTGGGTCTCA AGGAAGGAAAATCATCCAAAAAGTTTAGAAGAAGATGA
CDS sequence (LotjaGi2g1v0167700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAGTGCGC TGTGCTAGTTGGCGGGATAGACATGGTACAGCAATCAATCAAGATAGCTAAGCAACCTCATATTATTGTTGGGACGCCTG GACGAGTTTTAGATCACCTAAAAAACACCAAAGGATTTTCTTTTTCTCGACTAAAATACTTGGTTTTGGATGAAGCAGAC AGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGCGATTCCACGTGAGCGGAGAACATTTCTATT TTCTGCTACTATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCTA AGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGATTGTTACCTTGTATATATT CTCACTGAAATGGCTGAAAGTACGTCAATGGTGTTCACTCGGACATGCGATTCAACCCGGCTCCTGGCTTTGATTCTTAG GAATCTGGGTCTAAAAGCCATTCCAATTAATGGTCATATGAGCCAATCGAAGAGACTAGGAGCGTTGAATAAGTTCAAGT CGGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCAACGGTCGATATGGTGATTAAC TATGACATTCCCACAAACTCCAAAGATTATATACATCGCGTTGGAAGAACTGCTCGTGCAGGGCGCTCTGGGGTTGCCAT TTCCCTTGTGAATCAATATGAACTGGAGTGGTATATTCAAATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTG CCCAAGAAGTGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCAATGATGAAAATGAAGGAAGCT GGAGGGAAGAAGAAACGAAGAGGAGGTGAAGATGATTTAGCTGAGGAGGATATTGACAAGTACTTGGGTCTCAAGGAAGG AAAATCATCCAAAAAGTTTAGAAGAAGATGA
Protein sequence (LotjaGi2g1v0167700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSFSRLKYLVLDEAD RLLNEDFEESLNEILQAIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYI LTEMAESTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVIN YDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEVEVLLLEERVGEAKRLAMMKMKEA GGKKKRRGGEDDLAEEDIDKYLGLKEGKSSKKFRRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 282 | 282 | 1.15E-70 | ||
| ProSiteProfiles | 1 | 129 | 129 | 25.58 | ||
| Gene3D | 1 | 133 | 133 | 3.4E-52 | – | |
| CDD | 1 | 130 | 130 | 6.84032E-87 | – | |
| SMART | 1 | 144 | 144 | 1.0E-13 | ||
| Pfam | 1 | 118 | 118 | 3.2E-29 | ||
| PANTHER | 2 | 164 | 163 | 1.9E-88 | – | |
| PANTHER | 2 | 164 | 163 | 1.9E-88 | – | |
| ProSitePatterns | 75 | 83 | 9 | - | ||
| Gene3D | 135 | 351 | 217 | 1.8E-49 | – | |
| CDD | 141 | 270 | 130 | 1.41847E-59 | – | |
| ProSiteProfiles | 156 | 300 | 145 | 22.42 | ||
| Pfam | 156 | 261 | 106 | 1.1E-30 | ||
| PANTHER | 167 | 324 | 158 | 1.9E-88 | – | |
| PANTHER | 167 | 324 | 158 | 1.9E-88 | – | |
| SMART | 180 | 261 | 82 | 4.7E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0167700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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