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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0168400 |
| Transcript ID | LotjaGi2g1v0168400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloride channel protein; TAIR: AT5G49890.1 chloride channel C; Swiss-Prot: sp|Q96282|CLCC_ARATH Chloride channel protein CLC-c; TrEMBL-Plants: tr|G7KPA0|G7KPA0_MEDTR Chloride channel protein; Found in the gene: LotjaGi2g1v0168400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58036142..58040743) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTTTTAGCAGCAGCTGCTTCAGCACTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGGATTCCGGAGGTTAA AGCATATCTCAATGGCATCGACGCTCACACCATTCTAGCTCCAAGAACCCTTTTTGTAAAGGTAAATATTACTATAACCA TAGAAGCAAGCCCACCTTCTCTCTCATTCTTTCGACTTCCTGCATAAGCACACATAAAAATGATGAATTACCCTTAAACA ATTGAAATCTAGTCAAAGTATCAGTATTCTACTTCAGATAAAATGTTTTCAGTGAAGACTGAATATGAACTTTAGAGTTC AGAGTAAATTCTTTATTGTATTTTTTCCTTAAAGGGTTTGATAAAGGGATATTACCATGGAAAAGTTAAAGGATTAATTA TTGCGCATATGCCATTGTATGTATACTACTTATTGTGGTATGTTTGGTGTACCTTATACTTATACTGTTTTGTTATACCT TGTCATCTTTTAATTTCTGTAAAAGGATTTGTAAAAAATAGAACTAGCTGTAGATTTTGGGTGAATTAGTTTCATGACAT GTTATCAATGCCTAGGACTAAATACTCAGAAGTTTAATCCTTAACCTATTCTGGTCTTGTACTCTTGTATAAATTCAGAT TCAATTATGACTAATTGTAATCAAATTCAAATGAAAAATCTTCCTTTCACTGATATAATCTACTCTCTCTGAGATTTTCC TTGATGCACAGTGGATAAGAAATTTCACACATTTAGATATGTTCAGGATTTCATTCAGAGAATAAAACAACAGCAAACAC CTTGTTTTACAAAGTCAAGTCAGTTACATAGATCTAACGTGCCATTGTGTTATGTAAAAAACCAAGTTTTTGAAAAGACC ATTTATATCTAGGTGTTTCTATGGTCTCTCTTAAAGTTTTCCTTGGTCTTTTTCTTAGCTTATTGGGCAGTCTTCAATTT GATCACCTTAGGACACTTTTTACATTGCCAAACCATGTTAGGTGAAATTTTGTCATCTTTAGTCAATAAGTAATCCTCCA ACTTTCTCTCTGTTTCATTCGTTTTTAATCTTATTTTTTCTGGTATTTTCACTTAGACACCACAATATAAAATATCTTCA CAATGTTTAGCTCAGGCTTGTTAATAGCGCGCTATAGCGGCGCAATAGCCTGTAGCGTAGTGCCCTGGGGGCTCACCGCT ACTTGCCGCAATAGTGCTCAAAATAGCGTTTTTTGGGCTTCCCGCTACACTACGATATCCGCCATTAACAACCCTGGTTT AGCTTATGTTGATTCTTCCTAATAAATTCAGAGATTTTTTTTCTCTATTTTGGCTTAAGACTTATTGGGACATATTTAAT TTCTGTACGCAACCTATGATTTTAACTGTCAGATTGTTGGTTCCATTCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAA GAAGGACCTATGGTTCATACAGGTGCTTGTATAGCTTCTTTGTTGGGGCAGGGTGGATCTCGCAAGTATCATTTGACTTG GACTTGGCTTAGATATTTCAAAAATGACCGAGACCGGCGAGACATGATTACGTGTGGTGCAGCTGCGGGTGTTGCTGCTG CCTTTCGTGCTCCAGTAGGTGGTGTCCTTTTTGCCCTTGAAGAGGCGGCTTCATGGTATCTATTTCTGCTAAAAACAATC TTTCTCTCTCAAATTCATGGTATCTTTAAATTGTAAATTTGTAATTCTAGTAAAAAAAGATATTCCTTTCCAATCTCCAA TTTTTTTGTTAAAAAAGGGAAACCCGGTGCTTTACAGCTCCCACCATGATGGTGTCTAGGAAGGGCCGGATTCATTGCGG ATCTATTGTTGGCAGCCTTACCTTGCATTTGCACAAGAGGGTGATTCCACGAAAACTTTCTTGTTAGCAGAAGCAAAATT ATTTACTAAAGTACTGTATTAAAGATGTTAATTGAAAGCCAGAATTTAAACTTATACTTAAAATTGGAATACTATGTCTA CTTATAATGTTTTCTATTTTAAGCTTTATAACTTTTACTTATCTCAGCTATGAATAAAGGATAGACACCGTTTACTTGAA AGGTTTATAAAAAGAAGCATTGTTTCATATGTTCTTGTTTTAATCTATGATTCATGACAACATCGATGATATCTTTGGTG CTAAAAATATGACCTGAATTTTTTTTATTGGATGTTTATCTGTAATTGTGGCCATTTTAGAAAACTGAATAGTATATTTT CTTTATGGTGAATATCTGTAGGTGGAGGAGTGCTCTACTTTGGAGGACATTTTTCACTACAGCAGTGGTTGCTATTGTTT TAAGATCTGCAATTCAGATTTGTTCCTCAGGGAATTGTGGGCTATTTGGGGAAGGTGGTCTTATATTGTATGATGTAAGT TCAGCCAAGGTAACATATAGCGGTGGTGATATAGTAGCAGTTATAGTCTTGGGAACCATTGCTGGTTTTCTTGGAAGCAT ATACAATTTCCTCGTGGATAAGGTCGTTCGCATGTATAGCATCATCAATGAGTATGTCCTCACATTCAAGTTAATTAGTT CTTAGTCAATTCACTTTCTGCTTTCTAATCTTGTGTATTAACAAAGTAACTAATAAACCTTCTTTTTTCTTGTTGCAGAA AAGGTGCAGCTTACAAAATCTCTCTTGCTGTCACTGTTGCTATTTTAACATCATGTTGTTATTATTTCCTACCATGGATT GCAAGTTGCACCCCATGTCCTACTGATAAGGGAGTGATTTGTCCCTCTGTTGATGAGTCAGGAGAATACAAAATGTTTCA ATGTCCACCAGACCACTACAATGATCTTGCTTCCCTCTTCTTAAATACCAACGATGATGCGATTCGTAATCTTTTCAGTC CCAAGATAACCAAAGAATTTCATATTTCCAGTTTGTTTATCTTCTTTGCTACTATTTACTTTCTTGGGATAATCACATAT GGTATTGCTATTCCATCTGGGCTTTTCATTCCCGTCATACTTGCTGGGGCTGCCTACGGGCGTCTTATCGGGAGGCTCTT TGAACCAATCACGAAACTTGAAACCGGACTCTTTGCCCTCCTTGGAGCTGCCTCCTTGCTTGGTGGCACCATGAGAATGA CAGTCTCACTTTGTGTTATACTACTTGAGCTCACTAATGATCTCTTGTTACTTCCCCTTGTGATGCTGGCCTTGTTAATC TCGAAAACTGTGGCTGATTGCTTCAACAAGGGCGTCTACGATCAAATTCTGAAGATCAAAGGGCTTCCTTATTTGGAGGC TCATGCAGAACCTTACATGAGGAATATTGTTGCACGTGATGTTGTCTCGGGTCCATTGATGACCTTTTCTGGCATTGAAA GGGTTGCAAATATAATGCATGTTTTGAACACTACAGGGCATAACGGATTTCCTGTCATTGATGAACCGCCTTTCTCAGAT TCACCAGAATTGTTTGGGCTTGTACTGAGGTCTCATTTACTAGTTTTGCTGAAGGCAAAGAACTTTACAAGAGACAGGGT GTTCGCGGATCAGAGTATCATAGATAAAGTTTCTGTATTAGATTTTGGGAAAGCAGGATCAGGGAAGGGAATCAAATTAG AGGATCTAGATTTAGAAGAAGAAGAGTTGGATATGTATGTTGATCTCCATCCAATTACTAATTCATCCCCACACACTGTA GTTGAGACAATGTCACTAGCCAAAGCTGCCATTATTTTCCGCCAACAAGGACTCAGGCACATGTGTGTTGTTCCAAAGAG CCAAGGGGTATGATATTTTTTCCCTCCCATTAAATGTTATACTCTTTTATTTCTTTCTTTTTTTCAGTTGAGCGGAGGTT GTGCCAGATTTGAACCTGCAACTTGCTAATGGCTGGGGCCTGGGATAACCTAAACCACTAGTGCTGCAGAGATTGGCTTA TACTCCTTTACTTGAATGTGTGGGTTGATGGATTAATATCCTCCCATGTCACATGACAATGTCACGTGAAACATCGTATC TAACTCTTTCTTCATAAGTATTTTGTGGGTTTCACCTATTTATTAGATACGAAGAGAGAGATATGTGCAAAATATCTACA TGACAATGTCATGTGAAATTTCCACATAAGAGGATCTTGATCCGTGGGCACAAGACTCGCGTGCCCATGGTACTTATCCC GCAAGTCCTAAGATTGAGTCTTGGAAGGTGACGAACTCGCTTGGGGGGGGGGGGGAGTTTCCTTAGTGTACGCCTTTTTA ATGTAACACCCGATTTTTGCCTTTTAACTGGGCCCTTACAGGCTCCCAGGTTTGTCCAGTAGTATACACGTAAGGACTTC CTGGCCCCCTGCAAGCAACATTCCAAGACTTGATCCCGGGACCACCGGCCTAAGTAGTTAGTGCCATGGGTGCTAGAGTT CTCTTTCCACAGTTTATTTAAATATTCCAAATAAGATCTGACAAGTTTTACAACTTGTATTGCTTCACCTGGTGCGAAAT ATGCTGACAATCTCTACTTATTGCAGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGATTTCATGCCTGAGCATGTT TTGGGGCTTTACCCTGATATTAAACATCACAAATGGCACTGA
CDS sequence (LotjaGi2g1v0168400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCATACAGGTGCTTGTATAGCTTCTTTGTTGGGGCAGGGTGGATCTCGCAAGTATCATTTGACTTGGACTTGGCT TAGATATTTCAAAAATGACCGAGACCGGCGAGACATGATTACGTGTGGTGCAGCTGCGGGTGTTGCTGCTGCCTTTCGTG CTCCAGTAGGTGGTGTCCTTTTTGCCCTTGAAGAGGCGGCTTCATGGTGGAGGAGTGCTCTACTTTGGAGGACATTTTTC ACTACAGCAGTGGTTGCTATTGTTTTAAGATCTGCAATTCAGATTTGTTCCTCAGGGAATTGTGGGCTATTTGGGGAAGG TGGTCTTATATTGTATGATGTAAGTTCAGCCAAGGTAACATATAGCGGTGGTGATATAGTAGCAGTTATAGTCTTGGGAA CCATTGCTGGTTTTCTTGGAAGCATATACAATTTCCTCGTGGATAAGGTCGTTCGCATGTATAGCATCATCAATGAAAAA GGTGCAGCTTACAAAATCTCTCTTGCTGTCACTGTTGCTATTTTAACATCATGTTGTTATTATTTCCTACCATGGATTGC AAGTTGCACCCCATGTCCTACTGATAAGGGAGTGATTTGTCCCTCTGTTGATGAGTCAGGAGAATACAAAATGTTTCAAT GTCCACCAGACCACTACAATGATCTTGCTTCCCTCTTCTTAAATACCAACGATGATGCGATTCGTAATCTTTTCAGTCCC AAGATAACCAAAGAATTTCATATTTCCAGTTTGTTTATCTTCTTTGCTACTATTTACTTTCTTGGGATAATCACATATGG TATTGCTATTCCATCTGGGCTTTTCATTCCCGTCATACTTGCTGGGGCTGCCTACGGGCGTCTTATCGGGAGGCTCTTTG AACCAATCACGAAACTTGAAACCGGACTCTTTGCCCTCCTTGGAGCTGCCTCCTTGCTTGGTGGCACCATGAGAATGACA GTCTCACTTTGTGTTATACTACTTGAGCTCACTAATGATCTCTTGTTACTTCCCCTTGTGATGCTGGCCTTGTTAATCTC GAAAACTGTGGCTGATTGCTTCAACAAGGGCGTCTACGATCAAATTCTGAAGATCAAAGGGCTTCCTTATTTGGAGGCTC ATGCAGAACCTTACATGAGGAATATTGTTGCACGTGATGTTGTCTCGGGTCCATTGATGACCTTTTCTGGCATTGAAAGG GTTGCAAATATAATGCATGTTTTGAACACTACAGGGCATAACGGATTTCCTGTCATTGATGAACCGCCTTTCTCAGATTC ACCAGAATTGTTTGGGCTTGTACTGAGGTCTCATTTACTAGTTTTGCTGAAGGCAAAGAACTTTACAAGAGACAGGGTGT TCGCGGATCAGAGTATCATAGATAAAGTTTCTGTATTAGATTTTGGGAAAGCAGGATCAGGGAAGGGAATCAAATTAGAG GATCTAGATTTAGAAGAAGAAGAGTTGGATATGTATGTTGATCTCCATCCAATTACTAATTCATCCCCACACACTGTAGT TGAGACAATGTCACTAGCCAAAGCTGCCATTATTTTCCGCCAACAAGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCC AAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGATTTCATGCCTGAGCATGTTTTGGGGCTTTACCCTGATATT AAACATCACAAATGGCACTGA
Protein sequence (LotjaGi2g1v0168400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHTGACIASLLGQGGSRKYHLTWTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFF TTAVVAIVLRSAIQICSSGNCGLFGEGGLILYDVSSAKVTYSGGDIVAVIVLGTIAGFLGSIYNFLVDKVVRMYSIINEK GAAYKISLAVTVAILTSCCYYFLPWIASCTPCPTDKGVICPSVDESGEYKMFQCPPDHYNDLASLFLNTNDDAIRNLFSP KITKEFHISSLFIFFATIYFLGIITYGIAIPSGLFIPVILAGAAYGRLIGRLFEPITKLETGLFALLGAASLLGGTMRMT VSLCVILLELTNDLLLLPLVMLALLISKTVADCFNKGVYDQILKIKGLPYLEAHAEPYMRNIVARDVVSGPLMTFSGIER VANIMHVLNTTGHNGFPVIDEPPFSDSPELFGLVLRSHLLVLLKAKNFTRDRVFADQSIIDKVSVLDFGKAGSGKGIKLE DLDLEEEELDMYVDLHPITNSSPHTVVETMSLAKAAIIFRQQGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPDI KHHKWH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 1 | 564 | 564 | 0.0 | – | |
| Pfam | 1 | 352 | 352 | 6.9E-67 | ||
| Gene3D | 1 | 373 | 373 | 7.3E-75 | ||
| PANTHER | 1 | 564 | 564 | 0.0 | – | |
| SUPERFAMILY | 1 | 374 | 374 | 4.58E-69 | ||
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 40 | 63 | 24 | - | – | |
| PRINTS | 45 | 64 | 20 | 2.9E-44 | ||
| Phobius | 64 | 68 | 5 | - | – | |
| PRINTS | 66 | 74 | 9 | 1.1E-19 | ||
| Phobius | 69 | 89 | 21 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| PRINTS | 80 | 90 | 11 | 1.1E-19 | ||
| Phobius | 90 | 125 | 36 | - | – | |
| PRINTS | 98 | 105 | 8 | 1.1E-19 | ||
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 126 | 146 | 21 | - | – | |
| Phobius | 147 | 165 | 19 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 166 | 183 | 18 | - | – | |
| Phobius | 184 | 245 | 62 | - | – | |
| PRINTS | 222 | 238 | 17 | 1.1E-19 | ||
| Phobius | 246 | 268 | 23 | - | – | |
| TMHMM | 252 | 286 | 35 | - | – | |
| Phobius | 269 | 273 | 5 | - | – | |
| PRINTS | 270 | 290 | 21 | 2.9E-44 | ||
| Phobius | 274 | 290 | 17 | - | – | |
| Phobius | 291 | 301 | 11 | - | – | |
| TMHMM | 299 | 321 | 23 | - | – | |
| Phobius | 302 | 328 | 27 | - | – | |
| PRINTS | 302 | 318 | 17 | 2.9E-44 | ||
| PRINTS | 320 | 339 | 20 | 2.9E-44 | ||
| TMHMM | 325 | 347 | 23 | - | – | |
| Phobius | 329 | 333 | 5 | - | – | |
| Phobius | 334 | 354 | 21 | - | – | |
| Phobius | 355 | 566 | 212 | - | – | |
| PRINTS | 358 | 372 | 15 | 2.9E-44 | ||
| SUPERFAMILY | 375 | 549 | 175 | 2.62E-25 | – | |
| Gene3D | 382 | 553 | 172 | 5.3E-16 | – | |
| ProSiteProfiles | 383 | 452 | 70 | 8.375 | ||
| CDD | 384 | 551 | 168 | 1.16566E-29 | – | |
| ProSiteProfiles | 498 | 560 | 63 | 9.676 | ||
| Pfam | 500 | 548 | 49 | 2.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0168400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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