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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0196800 |
| Transcript ID | LotjaGi2g1v0196800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q5SMQ9|PIN1A_ORYSJ Auxin efflux carrier component 1a; TrEMBL-Plants: tr|M9WLU7|M9WLU7_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0196800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63161085..63165639) extracted from Lotus japonicus Gifu genome v1.2.
CATCATTTCACCTCAATGTAATTTTACATCATATATTCAAACATGCATTAAGGTTAGCTAAGTTTATTTGAATAGCCAAA TTAGTTTATACTATCTTTTTTCACAAAGAAACTGTGGATCCAGAGAAAAAGAGGCTCTTTACAAAGCTTAAAGCACTCTT TAAAACAGGAACTTGGAGACATCCCCACCTGAAACCCAAATTGCTTTTCCTCAGCTTTTTGTGACAAATTGAGGACCCAT AGAAGGTAGAGATAGAGAGAGAGAAAGCCACACACACCCACCCAATTTTCCATAGCCATCAAATACCCCCTTCAGTCCCA TTCCTCTCCCAAACCTCAAATCCAAACACACTTCAAAACAAAAAGGAAAACAACAAACTGAAAAAAAAATATCAAAAGCA AAATTCCTCTGTGCCTTGTGCTTTGGGGTCTGCAAGTTTAAGCTTTGCTTGAATCTCTCAAAGCTGAAAAAATATATCCT GTATATCCTGCAACAAACCACACTCACCCACTACCCCAAAACCCAAAATCACATGCTCTCCCATTTCCCTATATCTTCCC ATCATCACCACCACCAACAACACCATCTTCATCTCTCTTCCTCTGTTTCTCTCTCTTCTGCTTCTTCTTCTAGTTTCTCA AACCATTTGCTGAACTGAACCAACCAAGAACACAAGATGATCACTTTAACAGACTTCTACCATGTTATGACAGCAATGGT GCCACTCTATGTGGCCATGATCTTAGCCTATGGCTCAGTGAAATGGTGGAAAATCTTTTCCCCTGACCAATGCTCTGGCA TCAACCGTTTTGTTGCTCTGTTTGCAGTTCCACTCCTTTCTTTCCACTTCATAGCCTCCAACAACCCTTACAAGATGAAC ATTCGATTCCTAGCTGCTGATACCCTTCAAAAGATCATAATCTTGATCATTCTAGCAATATGGAGCAACGTCTCCAAAAA GGGTTGTTTGGAATGGACCATTACTCTGTTTTCCCTTTCCACACTCCCAAACACTCTGGTTATGGGTATCCCTCTGCTCA AAGGGATGTATGGTGAGTTCTCAGGGAGTTTAATGGTGCAGATTGTGGTCCTTCAGTGCATCATTTGGTACACTTTGATG CTCTTCATGTTTGAGTTCAGAGGAGCTAGAATGTTAATCTCTGAGCAGTTTCCTGACACTGCTGCTTCCATTGTCTCCAT CCATGTTGATTCTGATGTCATGTCACTGGATGGAAGACAAGTTTTGGAGACTGAAGCTGAGATTAAAGAAGATGGGAAGC TTCATGTGACTGTGAGGAAATCCAATGCTTCAAGATCAGATATTTTCTCAAGAAGGTCTCATGGTCTTTCTTCCACAACT CCTCGCCCTTCAAATCTCACCAATGCTGAGATATACTCTTTGCAATCCTCTAGAAACCCAACACCAAGAGGTTCCAGTTT CAACCATACAGATTTTTACTCCATGATGGCTGGTGGGAGAAACTCCAACTTTGGTGCCAATGATGTTTATGGTCTCTCAG CTTCAAGAGGACCAACTCCAAGGCCTTCTAACTATGATGAAGATGGTTCTGCTGCTGCTGCTGCTGGTGCAAATAAGCCA AAGTTTCATCATGGTTCTGGTGGTGGAACTGGTCACTACCCTGCACCAAACCCAGGAATGTTCTCTCCCAAAACTGTTGC TGCTAATGCTAACTCCAAGAGGCCTAATGGTCAAGCTCAGCAGAAACCAGAAGATGGGAAGGATCTTCACATGTTTGTTT GGAGTTCAAGTGCTTCACCAGTTTCTGATGTGTTTGGTGGGCATGAATTTGGTGCTCATGATCAGAAAGAAGTCAAATTG AATGTTTCTCCAGGAAAAGGTGAATTTTTGGTTGTTTTCTTTTCTTCATATCATTCATTGTATTTTCTTTTATTCTCATG TGGGTATTTGGTTGTATTTTATATTTTCAGTGGAGGGTCACAGAGACACTCAAGAGGACTACCTAGAGAAAGATGAGTTC AGCTTTGGAAACAGGGGAGTAGACAGGGAAATGAATCAGCTTGAAGGTGAGAAAGTTGGAGATGGGAAGTCTAAAACAAT GCCACCAGCAAGTGTCATGACAAGGCTTATATTGATCATGGTGTGGAGAAAGCTTATCAGAAACCCCAACACCTACTCTA GTCTAATTGGCCTCATTTGGTCTCTTGTTTCTTTCAGGCATGTCAAAATCTCTGCATAATCTTGTACATTTTCATGTGTA CTAATTACAATCCCTTGTTGTTTCCATTTTGATTGATTATGGTAGGTTTCTGGTGTTGTTGTTTTGTTCCTTGCAGGTGG AACATTGAGATGCCTGCCATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCT TGGTCAGTTCACTCCACTCCTTGTTATCTTACAAAATATTTTCAGTCAGAAACAAAAGAAATTAGTAATTATACTTTAAC ATAAAAATAATGCAAACACATAATAAATACCTCATTTTCACATTGAATGTTGTATGTTTTCATTGTATTGTGTTCATGTT TAAATTCTAAAAGAAATTAAACTTGTTCTGACATTTTTCTTTGCTTGAAAAACAGAAATCTTTTCAAATTCCATGCTAAC ATTGATTAATTGCTATTATTAAATTAAATGCTTTGTTTGACAAAGCAAGCAAGAAACAGGCAGAAAAGCAAACAGTATAA TGTTGTGATAATAATGTGGGGGGTTACTTTATCCATCTTTTTATGATAACTTTTTGCCAAGTTTGGTGTTGGTGGTGGGG GTGATGATGAAAGGTCTTTCACAATGGTGGTGGTGATAGTACTGATGATGAGCATGCTTGTTTGCTGCCCTCTTTTTTTT TTGGATGTGAATGACAGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTTTGCCA TGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCTTACAC GTTGCTATTGTTCAGGTTTGTACATTTCTTTATTTCTCTCTCTTCTGCTCCCTTACTCACAAAGCCAATACAATATTCAT TGCATAGGCTCCAAAAAATTCTATACTTTAATTATCTAATCAAATTGCTATACATATGTCTAGCTCTGCCAAGATAAGCT ATTATATTGCTATCTACCTTTTGTTTAAAAAAACCAAAGCCATTTTATTGTTCTGATTGAATTCCAATTGGTTGAAATTT AGTGTATCTTTGTAAATTCTTCTAGGAGGGTGTTTGGATTAGCAAAATTAATTAATTTTGTCACTTAGAAACTACTTATA ATCATTTTATTTAAATTAATTTTAGAAGATTTTTCAAACATACACTTATTCTAAAGTTAAAATCAATTATGAGAAAAAAA AATTGGGTATCAAAATTGATTATGAAAAAATAGAAGCTTATGAAGACAAACTATTACTTGTACAACAACATGCCTCATTC TTGTCAAAATGTTTGAAATTCTATGCCAATAACATTAATTGGCTATGGAAGTTGGAACTCCAATAGAATGTCATGACTCA TTTGAAAAGAAAATGTAAAGAGAAATGAATATCCTATAGCATATATTTGTACCACTTTATTCTTCCTCAGAATCAATTCT GCACTAAGAAGCTACTCACATGAGCTTGTCTTTTAACTTTATCAATTGTAAAAAGTGTACCAAACATGCTATTAATATTG AGAGTTGATCTCTTTGTGTGTTTGTGGATGTACAAGAAAGAATTAAAACCGTAGTTGACATGTTTGTTTGCTTGTCCTGT TATTGCCAAAAAAACCACAGGCAGCTCTACCCCAAGGAATTGTTCCATTTGTCTTTGCCAAGGAATATAATGTACATCCT GATATTCTCAGCACAGCGTAAGTATATAATATAGTTCCACTTTTCTTTTTCCCTTCATTCAATCTCTTCTCTTTTAATGC CAACCAATGAAACCTCCTTTTGCTGGTTGCAGTGTCATTTTTGGGATGCTCATTGCTTTGCCCATTACTCTAGTGTACTA CATCTTGTTGGGGTTATGAATGGATCATGACATGATGGATGGTACATAAGCCTCACAGTCACGTGTAGTGTAGCATCCAT GCAAGGCTTGGTAAAGGATTGTAGAGAGCATCATGAAAAAATTACAAAGGAATAGAAGAAAAGCATCCCCAGAATTCATG AATAGGAGGAACACCCTAGTAGTTCTTTTTTATTTTTTTTGTATGTTTCCTTTTTTTTTCTTTTTGAATGAATTGCCTTA TCTTAGTGAAAATGTAAGATGTAGCTAATTTACAAAATGATTATCTTGTTACATTTTATATTTTGTCCTTGGATTCCATA TCACTCATCAAATGAAGGAAAAGAAAGCAATGTAAACTTAGGTTGAAAAAAGTATGGGTTTATGATCACATTTCCCAGCA TATTAAACTAATTCGTGTTGCTTTTACTTTTCATTGTTTACCAATTAACATCGAATTCTATGTAATGAAAAAAGG
CDS sequence (LotjaGi2g1v0196800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCACTTTAACAGACTTCTACCATGTTATGACAGCAATGGTGCCACTCTATGTGGCCATGATCTTAGCCTATGGCTC AGTGAAATGGTGGAAAATCTTTTCCCCTGACCAATGCTCTGGCATCAACCGTTTTGTTGCTCTGTTTGCAGTTCCACTCC TTTCTTTCCACTTCATAGCCTCCAACAACCCTTACAAGATGAACATTCGATTCCTAGCTGCTGATACCCTTCAAAAGATC ATAATCTTGATCATTCTAGCAATATGGAGCAACGTCTCCAAAAAGGGTTGTTTGGAATGGACCATTACTCTGTTTTCCCT TTCCACACTCCCAAACACTCTGGTTATGGGTATCCCTCTGCTCAAAGGGATGTATGGTGAGTTCTCAGGGAGTTTAATGG TGCAGATTGTGGTCCTTCAGTGCATCATTTGGTACACTTTGATGCTCTTCATGTTTGAGTTCAGAGGAGCTAGAATGTTA ATCTCTGAGCAGTTTCCTGACACTGCTGCTTCCATTGTCTCCATCCATGTTGATTCTGATGTCATGTCACTGGATGGAAG ACAAGTTTTGGAGACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTGACTGTGAGGAAATCCAATGCTTCAAGAT CAGATATTTTCTCAAGAAGGTCTCATGGTCTTTCTTCCACAACTCCTCGCCCTTCAAATCTCACCAATGCTGAGATATAC TCTTTGCAATCCTCTAGAAACCCAACACCAAGAGGTTCCAGTTTCAACCATACAGATTTTTACTCCATGATGGCTGGTGG GAGAAACTCCAACTTTGGTGCCAATGATGTTTATGGTCTCTCAGCTTCAAGAGGACCAACTCCAAGGCCTTCTAACTATG ATGAAGATGGTTCTGCTGCTGCTGCTGCTGGTGCAAATAAGCCAAAGTTTCATCATGGTTCTGGTGGTGGAACTGGTCAC TACCCTGCACCAAACCCAGGAATGTTCTCTCCCAAAACTGTTGCTGCTAATGCTAACTCCAAGAGGCCTAATGGTCAAGC TCAGCAGAAACCAGAAGATGGGAAGGATCTTCACATGTTTGTTTGGAGTTCAAGTGCTTCACCAGTTTCTGATGTGTTTG GTGGGCATGAATTTGGTGCTCATGATCAGAAAGAAGTCAAATTGAATGTTTCTCCAGGAAAAGTGGAGGGTCACAGAGAC ACTCAAGAGGACTACCTAGAGAAAGATGAGTTCAGCTTTGGAAACAGGGGAGTAGACAGGGAAATGAATCAGCTTGAAGG TGAGAAAGTTGGAGATGGGAAGTCTAAAACAATGCCACCAGCAAGTGTCATGACAAGGCTTATATTGATCATGGTGTGGA GAAAGCTTATCAGAAACCCCAACACCTACTCTAGTCTAATTGGCCTCATTTGGTCTCTTGTTTCTTTCAGGTGGAACATT GAGATGCCTGCCATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCT GTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTTTGCCATGGCTGTGAGATTCCTTACAG GTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCTTACACGTTGCTATTGTTCAGGCAGCT CTACCCCAAGGAATTGTTCCATTTGTCTTTGCCAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTCATTTT TGGGATGCTCATTGCTTTGCCCATTACTCTAGTGTACTACATCTTGTTGGGGTTATGA
Protein sequence (LotjaGi2g1v0196800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNIRFLAADTLQKI IILIILAIWSNVSKKGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARML ISEQFPDTAASIVSIHVDSDVMSLDGRQVLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSHGLSSTTPRPSNLTNAEIY SLQSSRNPTPRGSSFNHTDFYSMMAGGRNSNFGANDVYGLSASRGPTPRPSNYDEDGSAAAAAGANKPKFHHGSGGGTGH YPAPNPGMFSPKTVAANANSKRPNGQAQQKPEDGKDLHMFVWSSSASPVSDVFGGHEFGAHDQKEVKLNVSPGKVEGHRD TQEDYLEKDEFSFGNRGVDREMNQLEGEKVGDGKSKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVSFRWNI EMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAVRFLTGPAVMAAASIAVGLKGTLLHVAIVQAA LPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 605 | 605 | 5.4E-166 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 605 | 605 | 0.0 | – | |
| PANTHER | 1 | 605 | 605 | 0.0 | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Pfam | 9 | 600 | 592 | 7.1E-200 | ||
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 59 | 20 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| Phobius | 90 | 100 | 11 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 462 | 310 | - | – | |
| MobiDBLite | 280 | 353 | 74 | - | – | |
| MobiDBLite | 332 | 347 | 16 | - | – | |
| Phobius | 463 | 480 | 18 | - | – | |
| Phobius | 481 | 491 | 11 | - | – | |
| Phobius | 492 | 511 | 20 | - | – | |
| TMHMM | 510 | 532 | 23 | - | – | |
| Phobius | 512 | 522 | 11 | - | – | |
| Phobius | 523 | 545 | 23 | - | – | |
| TMHMM | 539 | 561 | 23 | - | – | |
| Phobius | 546 | 550 | 5 | - | – | |
| Phobius | 551 | 571 | 21 | - | – | |
| Phobius | 572 | 582 | 11 | - | – | |
| TMHMM | 581 | 603 | 23 | - | – | |
| Phobius | 583 | 602 | 20 | - | – | |
| Phobius | 603 | 605 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0196800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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