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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0196800 |
| Transcript ID | LotjaGi2g1v0196800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT5G57090.2 Auxin efflux carrier family protein; Swiss-Prot: sp|Q0IQA5|PIN1D_ORYSJ Probable auxin efflux carrier component 1d; TrEMBL-Plants: tr|V7C3I7|V7C3I7_PHAVU Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0196800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63161541..63163621) extracted from Lotus japonicus Gifu genome v1.2.
GTAGACAGGGAAATGAATCAGCTTGAAGGTGAGAAAGTTGGAGATGGGAAGTCTAAAACAATGCCACCAGCAAGTGTCAT GACAAGGCTTATATTGATCATGGTGTGGAGAAAGCTTATCAGAAACCCCAACACCTACTCTAGTCTAATTGGCCTCATTT GGTCTCTTGTTTCTTTCAGGCATGTCAAAATCTCTGCATAATCTTGTACATTTTCATGTGTACTAATTACAATCCCTTGT TGTTTCCATTTTGATTGATTATGGTAGGTTTCTGGTGTTGTTGTTTTGTTCCTTGCAGGTGGAACATTGAGATGCCTGCC ATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCAGTTCACTCCACT CCTTGTTATCTTACAAAATATTTTCAGTCAGAAACAAAAGAAATTAGTAATTATACTTTAACATAAAAATAATGCAAACA CATAATAAATACCTCATTTTCACATTGAATGTTGTATGTTTTCATTGTATTGTGTTCATGTTTAAATTCTAAAAGAAATT AAACTTGTTCTGACATTTTTCTTTGCTTGAAAAACAGAAATCTTTTCAAATTCCATGCTAACATTGATTAATTGCTATTA TTAAATTAAATGCTTTGTTTGACAAAGCAAGCAAGAAACAGGCAGAAAAGCAAACAGTATAATGTTGTGATAATAATGTG GGGGGTTACTTTATCCATCTTTTTATGATAACTTTTTGCCAAGTTTGGTGTTGGTGGTGGGGGTGATGATGAAAGGTCTT TCACAATGGTGGTGGTGATAGTACTGATGATGAGCATGCTTGTTTGCTGCCCTCTTTTTTTTTTGGATGTGAATGACAGG TCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTTTGCCATGGCTGTGAGATTCCTTA CAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCTTACACGTTGCTATTGTTCAGGTT TGTACATTTCTTTATTTCTCTCTCTTCTGCTCCCTTACTCACAAAGCCAATACAATATTCATTGCATAGGCTCCAAAAAA TTCTATACTTTAATTATCTAATCAAATTGCTATACATATGTCTAGCTCTGCCAAGATAAGCTATTATATTGCTATCTACC TTTTGTTTAAAAAAACCAAAGCCATTTTATTGTTCTGATTGAATTCCAATTGGTTGAAATTTAGTGTATCTTTGTAAATT CTTCTAGGAGGGTGTTTGGATTAGCAAAATTAATTAATTTTGTCACTTAGAAACTACTTATAATCATTTTATTTAAATTA ATTTTAGAAGATTTTTCAAACATACACTTATTCTAAAGTTAAAATCAATTATGAGAAAAAAAAATTGGGTATCAAAATTG ATTATGAAAAAATAGAAGCTTATGAAGACAAACTATTACTTGTACAACAACATGCCTCATTCTTGTCAAAATGTTTGAAA TTCTATGCCAATAACATTAATTGGCTATGGAAGTTGGAACTCCAATAGAATGTCATGACTCATTTGAAAAGAAAATGTAA AGAGAAATGAATATCCTATAGCATATATTTGTACCACTTTATTCTTCCTCAGAATCAATTCTGCACTAAGAAGCTACTCA CATGAGCTTGTCTTTTAACTTTATCAATTGTAAAAAGTGTACCAAACATGCTATTAATATTGAGAGTTGATCTCTTTGTG TGTTTGTGGATGTACAAGAAAGAATTAAAACCGTAGTTGACATGTTTGTTTGCTTGTCCTGTTATTGCCAAAAAAACCAC AGGCAGCTCTACCCCAAGGAATTGTTCCATTTGTCTTTGCCAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCG TAAGTATATAATATAGTTCCACTTTTCTTTTTCCCTTCATTCAATCTCTTCTCTTTTAATGCCAACCAATGAAACCTCCT TTTGCTGGTTGCAGTGTCATTTTTGGGATGCTCATTGCTTTGCCCATTACTCTAGTGTACTACATCTTGTTGGGGTTATG A
CDS sequence (LotjaGi2g1v0196800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAGCTTGAAGGTGAGAAAGTTGGAGATGGGAAGTCTAAAACAATGCCACCAGCAAGTGTCATGACAAGGCTTAT ATTGATCATGGTGTGGAGAAAGCTTATCAGAAACCCCAACACCTACTCTAGTCTAATTGGCCTCATTTGGTCTCTTGTTT CTTTCAGGTGGAACATTGAGATGCCTGCCATCATAGCAAAGTCTATTTCAATTCTGTCAGATGCAGGGCTTGGCATGGCC ATGTTCAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGGAATTCCATTGCAACTTTTGCCATGGC TGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGAACACTCTTACACGTTG CTATTGTTCAGGCAGCTCTACCCCAAGGAATTGTTCCATTTGTCTTTGCCAAGGAATATAATGTACATCCTGATATTCTC AGCACAGCTGTCATTTTTGGGATGCTCATTGCTTTGCCCATTACTCTAGTGTACTACATCTTGTTGGGGTTATGA
Protein sequence (LotjaGi2g1v0196800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQLEGEKVGDGKSKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVSFRWNIEMPAIIAKSISILSDAGLGMA MFSLGLFMALQPRIIACGNSIATFAMAVRFLTGPAVMAAASIAVGLKGTLLHVAIVQAALPQGIVPFVFAKEYNVHPDIL STAVIFGMLIALPITLVYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 9 | 184 | 176 | 1.3E-112 | – | |
| PANTHER | 9 | 184 | 176 | 1.3E-112 | – | |
| TIGRFAM | 10 | 184 | 175 | 3.9E-88 | ||
| Pfam | 23 | 179 | 157 | 5.6E-80 | ||
| Phobius | 42 | 59 | 18 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 101 | 11 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 102 | 124 | 23 | - | – | |
| Phobius | 125 | 129 | 5 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 130 | 150 | 21 | - | – | |
| Phobius | 151 | 161 | 11 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 162 | 181 | 20 | - | – | |
| Phobius | 182 | 184 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0196800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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