Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0349400 |
| Transcript ID | LotjaGi2g1v0349400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Upstream activation factor subunit spp27; TAIR: AT2G35605.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30; TrEMBL-Plants: tr|I1LIF9|I1LIF9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82618772..82621895) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTATATTTATACTGCAAAATCTTTATTAAATATTTATAAATAGTTTTGGTCATGGATGTCGAGTAATAGTGAATCTT TTTTGCTTCTGGACGTAAGCATTTTGATAACTTTTTTATGCTTCAAAATGTTTACTTCCTTAACTTCTTTGATTTATTAA GCCATCATGGAAAGCCTGATCTTTGATTGATTAAGGCTTTATCATGAATGAAATAACTTTGTGTGCATTACCTTATTGTT GTTTTGACTAATTACCTAACAGGCTAACACATAGTGAAAATAAACAATCTCAAGGACATAATTATGTTCTGTGTTAGATG GAATTAATTTGTCAAACTATGATCCTGCATGCTTCTATGCTTCTCCATTGCTTACATAAATGAGGCTGTAAACTATATTT TTCTTCTCCAAATTTAGCCGTAAACTAAATAAAGGAAAATCGTGTACATAGCTGGGAGAGTTGATGAAGTTCCATCAAAA GTCTTCATTCTTGAATTTTTCGTCAGCTGAATTAGTTCTTTATTTTGTTTGGACAATAGCTGAATCAGGTAAAAAAAATG TTAAAATTTTCTTTGCTATGTGTATGGGAAATCCGCCATAATTTAAATGTAGCTAACTCTATGTGGTGCTAGATAAACTA TGGGTCGATAACCCGCAGACATATGTTTGGATATCCATTGACATTAGTGCGAACATGCGTTAACACTCACTTTGAGGTAA AAATTGAATATAACTCTTCACATGAATTAAGATGGATGTATTTTTATACGTTAACTCAAATGATATCCAAAACACAGGTG ATGGACACAACAATAAGCAAATGATTCAGTTTGTGTTGGTTTTTCCGTTAGGTTCAGCATTCGAAACATTGAAATTCAGA ATTGCGAGCTATGGAACTTCAAATGTGTAAGAGGCTCATGACCTCCATTCATCCAACGCTGCTTCAAGTCGTGTAGTGAA ACACAAACACATTGATTTTTTGGGAGGAAAATGACAATTGATACCTTGCACATCTTGCCCCTTTTAGTAACACCCATGAT ATTAATACAAATATTTGAGTGGTTATTTATTTACAAATCTCCCATGAATAGCAATTTTTAAACTGCATGCATGGATTGGG CTAAATGGGGGTAAACAACACTCTTGGGTCTAGGCCCAATGAAATTCATCCACCTAAACTTGTTGTTAACAAAAACAAAC AAAAAATTTAAAATAACAGAGTTGCCTAGAGGAGAAAGGAACATTTCTAAAACCCTTCACCTCAAACTCTCACTCTCATT CTCACTCTTAGGTTTTCAGAACTGCGATCATGGCGGGAGTTAGGATTTTCGGTGCATACGCTGCCAGAGCTCTCATGGCG GCGGCGTCCACGGCGAAAGGCGCGGTCAAGAAGGAAGTCGCGCGCGCCCCGCCCAAGAAGCCTGCTACTGCTGCTCCCAG TAAAACCAAGAGCAGCACTAGCGGCATTCAGAAGGTGGTTCCCGTCTCTTCCGAGCTCGGAAAGTTTCTCGGTTCGCCGG AAGTCTCCAGAACCGACGCTGTCAAGAGAGTCTGGGAGTACATCAAGCTGCAGAATCTCCAGGTCTTCTTTCCATTTTCA TTCACTCAATGTTGCTATTTTTCTTCGCGATGATTCGTATTTTCAACTGATTTCTTGGTTTTCTGATGCTAACTATCGTG GTAGATCATGTGTTTCCATGTTAGGTTTAACTTTTGAGTTGATGTGTGTGCTTGTTGAGACGAAGGGATGATCACTCAGT TTCGCACTGATATATTTAATCTCAGTTTCATGTAATTTTTGGGGCAGCATTAGCAAATGCAATGTCATTTCATTGGTATC AAGTTTATCTAAGTCATCTCTATTTTCATTGTTTTGCTGTTTTTCGCCTTTTGCCCTTTTAGTGTGGTATCCTATTCTGT AATTGATGATATACATTGTATGAAGATAGATGTTATGTATGATGTAGTGATAATTTGATTCTGTGAGGCTGATAGTTTAT GATTATTTTTAATCAGGTTTCATGCTTGTTTCTGTCAGTGTTGTCAAATAGTGGATATCGTGGCCCTATAGCGCTATAGC ATAACCCTCGCTCTGAGGGTTACTGCTATCCGCTATTTTCCGCTTTGAGGGCTTGACATAGTGGATTTTTGGCTTTCCAC CAGTGTTGTCAAATGGCAGTTATAGTGGCGCTACAACGCTATAGTGTAGTGCTATGAGGGCTCACAACTATTCTGCTGAG GGTTTGAAATAGCGGATCTTTGGCTTTCCGTTATTTTCCGCAATCCACGATTAACAACACTGCTTTCCACTATTTTCTGC GATTGACAACACTTGTTTCTGTAGTTCAATTGTGAGATGCAGCTGCTGATAACATTCTTAATCCTTGTTGGATTTTCTTC TCCAGCTTATGCTTGCAATTTAATTGTGTTTTTTGCATCTTTTTTCTTTAGTCTCTTCATTGAATTTCTCTTGCTATTAA TAAACCAATGGAAGCTTTCATGATATTTGTTACAGAAGCAGGGTAGTTTGTCTTGGATTATGGAAGTTTTCTCTCGTTGT CTGCTATTTTTGTCTCTTTTCAGTGTTGTCTGTCTCTACAATGGCATAACAGAGCTATTCTTTTGCAGAATCCTACAAAT AAGAAGGAAATCTTTTGTGATGACAAACTGAAGACCATCTTTGAAGGGAAAGATAAAGTGGGATTCACAGAGATTGCCAG ATTGCTGTCTAACCATTTTGTGAAATCAGTCTAATTGGATTCTTCTCGATGGTAACTCGTAATAGTACATTAAGTAGGGC TTTGTTATCTTAAGTACATGCTATGTCACGGGCTGCTAAAGAAACTTGGAAATTTGTAAGATCTGACTTGAATTTGGGAT TGAAAGTGGTGTCATTTTGTCACTGTTTGATTTCACATTGTTAGGATGACATATATATTAGTATTTCCAAGTCATATATG TGCGTTCACCACTTCATTTCAAATCTACATGGTTATAATTATAAGATACTATCTGCTTGGTATGACAATTATTCATCCCG CTCCCTGAATAGAATTTTATGTAAGGATGCAGTAGGATTGGAAAATTTGGGTATCGAACTTAGTTTAGTACCTTGTAAAC CCAA
CDS sequence (LotjaGi2g1v0349400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGAGTTAGGATTTTCGGTGCATACGCTGCCAGAGCTCTCATGGCGGCGGCGTCCACGGCGAAAGGCGCGGTCAA GAAGGAAGTCGCGCGCGCCCCGCCCAAGAAGCCTGCTACTGCTGCTCCCAGTAAAACCAAGAGCAGCACTAGCGGCATTC AGAAGGTGGTTCCCGTCTCTTCCGAGCTCGGAAAGTTTCTCGGTTCGCCGGAAGTCTCCAGAACCGACGCTGTCAAGAGA GTCTGGGAGTACATCAAGCTGCAGAATCTCCAGAATCCTACAAATAAGAAGGAAATCTTTTGTGATGACAAACTGAAGAC CATCTTTGAAGGGAAAGATAAAGTGGGATTCACAGAGATTGCCAGATTGCTGTCTAACCATTTTGTGAAATCAGTCTAA
Protein sequence (LotjaGi2g1v0349400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGVRIFGAYAARALMAAASTAKGAVKKEVARAPPKKPATAAPSKTKSSTSGIQKVVPVSSELGKFLGSPEVSRTDAVKR VWEYIKLQNLQNPTNKKEIFCDDKLKTIFEGKDKVGFTEIARLLSNHFVKSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 5 | 131 | 127 | 8.2E-52 | – | |
| PANTHER | 5 | 131 | 127 | 8.2E-52 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 132 | 108 | - | – | |
| MobiDBLite | 26 | 53 | 28 | - | – | |
| Gene3D | 46 | 132 | 87 | 9.7E-27 | ||
| SUPERFAMILY | 48 | 130 | 83 | 4.8E-28 | ||
| SMART | 53 | 130 | 78 | 2.3E-31 | ||
| CDD | 57 | 128 | 72 | 2.79101E-33 | – | |
| Pfam | 57 | 128 | 72 | 1.2E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0349400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…