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IPR019835 is a SWIB domain.
<p>The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation [[cite:PUB00014853], [cite:PUB00088122], [cite:PUB00097573]]. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [[cite:PUB00014864]], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. This domain is also found in the Saccharomyces cerevisiae SNF12 protein, the eukaryotic initiation factor 2 (eIF2) [[cite:PUB00097572]]and the Arabidopsis thaliana At1g31760 protein [[cite:PUB00097574]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: SWI/SNF complex component SNF12 homolog [Glycine max] gi|356511807|ref|XP_003524614.1| | 9 | ||
| – | PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1| | 26 | ||
| – | PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1| | 36 | ||
| – | Chromatin remodeling complex subunit [Medicago truncatula] gi|357463633|ref|XP_003602098.1| | 9 | ||
| – | PREDICTED: upstream activation factor subunit UAF30-like [Cicer arietinum] gi|502158846|ref|XP_004511300.1| | 14 | ||
| – | Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| | 35 | ||
| – | Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| | 34 | ||
| – | PREDICTED: upstream activation factor subunit spp27-like isoform 1 [Glycine max] gi|356496858|ref|XP_003517282.1| | 14 | ||
| – | Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1| | 13 | ||
| – | PREDICTED: upstream activation factor subunit UAF30-like [Fragaria vesca subsp]. vesca] gi|470115751|ref|XP_004294055.1| | 14 | ||
| – | SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] gi|18415906|ref|NP_567661.1| | 14 | ||
| – | PREDICTED: SWI/SNF complex component SNF12 homolog [Cicer arietinum] gi|502176194|ref|XP_004515819.1| | 10 | ||
| – | Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1| | 13 | ||
| – | PREDICTED: upstream activation factor subunit UAF30-like [Fragaria vesca subsp]. vesca] gi|470119496|ref|XP_004295850.1| | 8 | ||
| – | SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|G7J5J5|G7J5J5_MEDTR Chromatin remodeling complex subunit; Found in the gene: LotjaGi1g1v0238200 | 11 | ||
| – | SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|G7J5J5|G7J5J5_MEDTR Chromatin remodeling complex subunit; Found in the gene: LotjaGi1g1v0238200 | 11 | ||
| – | Zinc finger CCCH domain protein; TAIR: AT2G16485.2 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A0B2RGJ5|A0A0B2RGJ5_GLYSO Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 | 40 | ||
| – | Zinc finger CCCH domain protein; TAIR: AT2G16485.1 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A151TCZ6|A0A151TCZ6_CAJCA Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 | 18 | ||
| – | SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|K7KP05|K7KP05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0087800 | 11 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT2G35605.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30; TrEMBL-Plants: tr|I1LIF9|I1LIF9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349400 | 17 | ||
| – | Zinc finger CCCH domain protein; TAIR: AT3G51120.1 zinc finger CCCH domain-containing protein 44; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|G7KGD4|G7KGD4_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0384000 | 41 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT3G19080.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1J943|I1J943_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0398300 | 14 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT2G14880.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I3TA97|I3TA97_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0460900 | 16 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 | 14 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 | 13 | ||
| – | SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|A0A1J7HXV2|A0A1J7HXV2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0222400 | 12 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1KYE8|I1KYE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0151600 | 13 | ||
| – | Upstream activation factor subunit spp27; TAIR: AT4G26810.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30; TrEMBL-Plants: tr|A0A1J7HL65|A0A1J7HL65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0154300 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd10567 | CDD | 1 | 3.57 |